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    Igbp1b immunoglobulin (CD79A) binding protein 1b [ Rattus norvegicus (Norway rat) ]

    Gene ID: 502919, updated on 29-Feb-2024

    Summary

    Official Symbol
    Igbp1bprovided by RGD
    Official Full Name
    immunoglobulin (CD79A) binding protein 1bprovided by RGD
    Primary source
    RGD:1560971
    See related
    Ensembl:ENSRNOG00000062370 AllianceGenome:RGD:1560971
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1560971
    Summary
    Predicted to enable protein phosphatase 2A binding activity. Predicted to be involved in regulation of dephosphorylation. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in corpus callosum agenesis-intellectual disability-coloboma-micrognathia syndrome. Orthologous to human IGBP1 (immunoglobulin binding protein 1). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

    Location:
    4q44
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (173260206..173261556, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (171528962..171530312, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (172709724..172711074)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102547371 Neighboring gene uncharacterized LOC102547496 Neighboring gene LIM domain only 3 Neighboring gene uncharacterized LOC102547697 Neighboring gene RERG like

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables protein phosphatase 2A binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of dephosphorylation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in regulation of signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    immunoglobulin-binding protein 1b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109355.1NP_001102825.1  immunoglobulin-binding protein 1b

      See identical proteins and their annotated locations for NP_001102825.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473964
      UniProtKB/TrEMBL
      A6IMM1, D3ZMB4
      Related
      ENSRNOP00000085084.1, ENSRNOT00000103092.1
      Conserved Domains (1) summary
      pfam04177
      Location:13333
      TAP42; TAP42-like family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      173260206..173261556 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)