Entry - *300300 - BRUTON AGAMMAGLOBULINEMIA TYROSINE KINASE; BTK - OMIM
* 300300

BRUTON AGAMMAGLOBULINEMIA TYROSINE KINASE; BTK


Alternative titles; symbols

AGAMMAGLOBULINEMIA TYROSINE KINASE; ATK
B-CELL PROGENITOR KINASE; BPK


HGNC Approved Gene Symbol: BTK

Cytogenetic location: Xq22.1     Genomic coordinates (GRCh38): X:101,349,450-101,390,796 (from NCBI)


Gene-Phenotype Relationships
Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Xq22.1 Agammaglobulinemia, X-linked 1 300755 XLR 3
Isolated growth hormone deficiency, type III, with agammaglobulinemia 307200 XLR 3

TEXT

Description

BTK is a key regulator of B-cell development (Rawlings and Witte, 1994).


Cloning and Expression

Using a positional cloning strategy to identify genes within the XLA locus on the X chromosome, followed by screening a cDNA library derived from a Burkitt lymphoma cell line, Vetrie et al. (1993) isolated BTK, which they called ATK. The ORF of ATK encodes a 659-amino acid polypeptide. Two alternative initiation codons within the same ORF would result in peptide chains of 571 and 497 amino acids, respectively, if used. ATK shares a high degree of similarity with members of the SRC (190090) family of protooncogenes that encode protein-tyrosine kinases. Northern blot analysis of RNAs derived from lymphoid lineages demonstrated that the 2.6-kb ATK mRNA was expressed in a B-cell line and in B cells of 2 patients with chronic lymphocytic leukemia, but not in T cells or a T-cell line.

Desiderio (1993) compared the structure of ATK and LTK (151520) with SRC.

Tsukada et al. (1993) independently described BTK as a cytoplasmic tyrosine kinase that they termed BPK. BPK was expressed in all cells of the B lineage and in myeloid cells. Tsukada et al. (1993) concluded that BPK is not a member of the SRC family based on the following differences: (1) the kinase catalytic domain contains the sequence DLAARN, which is similar to ABL (189980), FPS (190030), and CSK (124095), but different from the SRC family (DLRAAN); (2) BPK lacks the consensus myristoylation signal (glycine at position 2 and lysine or arginine at position 7); (3) BPK lacks the equivalent of tyrosine 527 in SRC in the C-terminal domain following the kinase sequences, which is important in regulation of kinase activity; and (4) the N-terminal region of BPK is unusually long.


Gene Structure

Rohrer et al. (1994) determined the genomic organization of the BTK gene. BTK contains 19 exons and spans 37 kb. The region 5-prime to the first untranslated exon lacks TATAA or CAAT boxes, but it contains 3 retinoic acid-binding sites.


Mapping

By in situ hybridization, Vetrie et al. (1993) mapped the BTK gene to chromosome Xq21.3-q22. Oeltjen et al. (1995) concluded that the 3-prime end of the GLA gene (300644) is 9 kb from the 5-prime end of the BTK gene, and they found 2 additional genes in the region immediately 5-prime to BTK.


Gene Function

Tsukada et al. (1993) found that BPK mRNA, protein expression, and kinase activity were all reduced or absent in XLA pre-B and B cell lines.

Although evidence from the study of XLA indicated that BTK plays a crucial role in B-lymphocyte differentiation and activation, its precise mechanism of action remained unknown, primarily because the proteins that it interacts with had not been identified until the work of Cheng et al. (1994). They showed that BTK interacted with SRC homology 3 domains of FYN (137025), LYN (165120), and HCK (142370). All of these are protein-tyrosine kinases that are activated upon stimulation of B- and T-cell receptors. These interactions were mediated by two 10-amino acid motifs in BTK. An analogous site with the same specificity was also identified in ITK (186973), the T-cell-specific homolog of BTK. The findings of Cheng et al. (1994) extended the range of interactions mediated by SRC homology 3 domains and provided an indication of a link between BTK and previously established signaling pathways in B lymphocytes.

Uckun et al. (1996) noted that a number of human diseases including immune deficiencies apparently stem from inherited or acquired deficiencies of checkpoints that regulate the rate of apoptosis in lymphoid cells. Uckun et al. (1996) reported that DT-40 lymphoma B cells rendered BTK deficient through targeted disruption of the BTK gene did not undergo radiation-induced apoptosis. They further demonstrated that the tyrosine kinase domain of BTK was necessary for triggering radiation-induced apoptosis.

Ng et al. (2004) tested the specificity of recombinant antibodies from single peripheral B cells isolated from patients with XLA and found that XLA B cells were selected to express a unique antibody repertoire using distinct VH and D genes favoring hydrophobic reading frames normally counterselected in healthy donor B cells. Patient B cells appeared to undergo extensive secondary recombination on both IgK (see 147200) and IgL (see 147220) loci and had a slightly increased proportion of cells expressing antinuclear antibodies. Ng et al. (2004) concluded that almost half of the antibodies expressed by XLA B cells are polyreactive and that BTK is essential for removal of autoreactive B cells.

Hantschel et al. (2007) identified the BTK tyrosine kinase and TEC kinase (600583) as major binders of the tyrosine kinase inhibitor dasatinib, which is used for treatment of BCR/ABL (see 151410)-positive CML (608232). Dasatinib did not bind ITK. In a CML cell line, they determined that a thr474-to-ile (T474I) substitution in the BTK gene conferred resistance to dasatinib. They suggested that, like the structurally homologous thr315 residue in the ABL gene (see 189980.0001), the BTK thr474 residue is the gatekeeper residue critical for dasatinib binding. Analysis of mast cells derived from Btk-deficient mice suggested that inhibition of Btk by dasatinib may be responsible for the observed reduction in histamine release upon dasatinib treatment. Dasatinib inhibited histamine release in primary human basophils and secretion of proinflammatory cytokines in immune cells. The findings suggested that dasatinib may have immunosuppressive side effects.

Using ELISA, microarray analysis, RT-PCR, and flow cytometry, Hasan et al. (2007) demonstrated that Btk -/- mouse B cells responded more efficiently to CpG-DNA stimulation by producing higher levels of proinflammatory cytokines and Il27 (608273), but lower levels of the inhibitory cytokine Il10 (124092). Tlr9 (605474) protein and mRNA expression was enhanced in Btk -/- cells, especially after Tlr9 stimulation. Whereas Btk -/- and wildtype transitional stage-1 (T1) B cells failed to proliferate and died after CpG stimulation, T2 cells, expressing higher levels of Tlr9, proliferated and matured. Hasan et al. (2007) concluded that BTK regulates both TLR9 activation and expression in B lymphocytes and is necessary for inhibitory cytokine expression.

Using bone marrow-derived macrophages (BMDMs) from mice and humans with genetic BTK deficiency, Mao et al. (2020) found that BTK regulated NLRP3 (606416) inflammasome activation, but not other inflammasomes. Similarly, exposure to low concentrations of a BTK inhibitor upregulated NLRP3 inflammasome activity, whereas high concentrations of the inhibitor caused BTK-independent inhibition of NLRP3 inflammasome activity. Overexpression and knockout analyses revealed that BTK interacted with NLRP3 and regulated its phosphorylation and oligomerization, thereby modulating NLRP3 inflammasome activation. In addition, BTK downregulated NLRP3 interaction with ASC (PYCARD; 606838) and ASC assembly. BTK also inhibited NLRP3 interaction with NEK7 (606848), thereby inhibiting NEK7 phosphorylation and oligomerization. Mutation analysis showed that the PH and PTK domains of BTK interacted with the pyrin and NACHT domains of NLRP3. The PTK domain containing the BTK kinase site played a critical role in BTK inhibition of the NLRP3 inflammasome, as BTK kinase activity was required for its inhibitory function. BTK interacted with protein PP2A (PPP2CA; 176915) and upregulated PP2A phosphorylation at tyr307. Phosphorylation of PP2A temporarily inactivated PP2A and prevented it from dephosphorylating ser5 in the NLRP3 pyrin domain, leading to inhibition of the NLRP3 inflammasome. Further analysis demonstrated that the different dosage-dependent effects of BTK inhibitors on NLRP3 inflammasome activity were due to the differential effects of the inhibitors on the interaction of NLRP3 with its downstream NLRP3 inflammasome components and on the generation of NLRP3 inflammasome products. Inhibition of the NLRP3 inflammasome by high-dose BTK inhibitor was likely an off-target effect of the inhibitors on JNK (601158) activity.


Biochemical Features

Vihinen et al. (1994) used a 3-dimensional model for the BTK kinase domain, based on the core structure of cAMP-dependent protein kinase, to interpret the structural basis for disease in 8 independent point mutations in patients with XLA. Because arg525 of BTK had been thought to substitute functionally for a critical lysine residue in protein-serine kinases, they studied the arg525-to-gln mutation and found that it abrogated the tyrosine kinase activity of BTK. All of the 8 mutations, including lys430-to-glu (300300.0002), were located on one face of the BTK kinase domain, indicating structural clustering of functionally important residues.

Mao et al. (2001) determined the x-ray crystal structure of the BTK kinase domain in its unphosphorylated state to 2.1-angstrom resolution. The structure suggested that the trans-phosphorylation of tyr551 can lead to BTK activation by triggering an exchange of hydrogen-bonded pairs from glu445/arg544 to glu445/lys430 and subsequent relocation of helix alpha-C of the N-terminal lobe. The model also indicated that mutations in the C-terminal lobe of the kinase domain, such as R562W (300300.0042), are directly or indirectly involved in peptide substrate binding. Other disease-associated mutations in this domain (e.g., E589G; 300300.0044) alter interactions with neighboring residues.


Molecular Genetics

X-linked agammaglobulinemia (XLA; 300755) is an immunodeficiency characterized by failure to produce mature B lymphocytes and associated with a failure of Ig heavy chain rearrangement. Using probes derived for the Southern analysis of DNA from 33 unrelated families and 150 normal X chromosomes, Vetrie et al. (1993) detected restriction pattern abnormalities in 8 families with XLA. Five of them had deletions that were shown to be entirely intragenic to BTK, confirming involvement of BTK in XLA. Two single-base missense mutations were identified in XLA patients. The failure of pre-B cells in the bone marrow of XLA males to develop into mature, circulating B cells could be the result of the product of the mutant ATK gene failing to fulfill its role in B-cell signaling. Vetrie et al. (1993) noted that inactivation of the mouse Lck gene (153390), another member of the SRC family of tyrosine kinases, results in a thymocyte differentiation defect.

Parolini et al. (1993) identified a family in which a healthy father transmitted the XLA defect to 2 of his daughters, indicating gonadal or somatic mosaicism. To assess the frequency of this phenomenon, Conley et al. (1998) evaluated 11 sisters of 7 women who were carriers of XLA and whose mutation occurred on the paternal haplotype. None of the 11 sisters were carriers of the mutations seen in their nephews.

Vorechovsky et al. (1993) pointed out that common variable immunodeficiency (CVID) is sometimes clinically and immunologically indistinguishable from XLA if it starts early in childhood and occurs sporadically in males with a decreased number of B cells. Using a cDNA clone that represented the full-length ATK (BTK) cDNA, Vorechovsky et al. (1993) did Southern blot analysis of 39 Swedish male patients diagnosed with CVID or possible CVID. One man in his late 40s, who had had recurrent respiratory infections from infancy, lacked immunoglobulins of all isotypes, and had less than 1% B cells among peripheral blood mononuclear cells, had an abnormality of the ATK gene. The abnormality was missing in his mother but had been inherited by both of his daughters.

Vorechovsky et al. (1993) failed to find the arg28-to-cys mutation, which is found in xid in mice (see ANIMAL MODEL), in 13 unrelated patients with XLA and 2 patients with XLA and growth hormone deficiency (IGHD3; 307200). They pointed to the milder phenotype of the xid mouse compared to XLA cases and suggested that if this particular mutation occurs in the human BTK gene, it might result in a milder phenotype with normal or only moderately reduced B cells and more selective immunoglobulin deficiency in boys, which may or may not increase susceptibility to infections.

Ohta et al. (1994) reported the DNA sequence of the 18 coding exons of BTK and their flanking regions. Correlations were made between the nature of mutations and the organization of the BTK gene. They found several examples of the same mutation occurring in unrelated patients, and one of these mutations occurred at the same codon that is substituted in the xid mouse. However, in xid, the mutation occurs at the first position in the conserved arginine codon, 214C-T, and results in an arg28-to-cys substitution, whereas in human cases it occurs at the second nucleotide, 215G-A, and results in an arg28-to-his amino acid change (300300.0005). The observations suggested that a limited number of deleterious changes in BTK produce clinically recognizable XLA. XLA patients have been classified in 2 general groups: those presenting at an early age with particularly severe infections and those with less severe disease in which production of immunoglobulin is sustained at low-to-normal levels well into the first decade of life. In the latter cases, an oncogenetic change may occur in which the defective tyrosine kinase no longer can sustain the B-cell population, and a progressive reduction in immunoglobulin production occurs. Ohta et al. (1994) described the arg525-to-gln mutation (300300.0001) in patients whose disorder might have been classified as common variable immunodeficiency disease. These patients had low levels of circulating B cells at an early age with mildly decreased IgM and variable IgG levels, although all were IgA deficient.

Kornfeld et al. (1995) described the case of a 16-year-old boy who had recurrent upper respiratory tract infections at 13 months of age and was diagnosed as having transient hypogammaglobulinemia of infancy on the basis of low immunoglobulin levels, normal diphtheria and tetanus antibody responses, normal anterior and posterior cervical nodes, normal tonsillar tissue, and normal numbers of B cells in the blood. IgA levels returned to normal at 15 months of age and remained within normal limits over the next 12 months, and IgG and IgM levels remained relatively unchanged. At age 10, he began receiving intravenous gammaglobulin, which resulted in cessation of infections. The clinical picture was thought to be that of common variable immunodeficiency disease. However, gene studies revealed the deletion of exon 16 of the BTK gene resulting from a splice junction defect. The patient represents an example of the extreme variation that can occur in the XLA phenotype.

Hagemann et al. (1995) described 6 mutations in the BTK gene as the cause of XLA; 5 were novel. The mutations included 2 nonsense and 2 missense mutations, a single base deletion at an intron acceptor splice site, and a 16-bp insertion.

Kobayashi et al. (1996) reported abnormalities in the BTK gene in 12 unrelated Japanese families with X-linked agammaglobulinemia. Gene rearrangement in the kinase domain was found in 2 patients by Southern blotting. Seven point mutations, 2 small deletions, and 1 small insertion were detected by SSCP analysis and sequencing. Phenotypic heterogeneity was observed in affected family members with the same mutation. The authors concluded that analyzing BTK gene alterations with SSCP is valuable for the diagnosis of XLA patients and for carrier detection; however, the correlation between gene abnormalities and clinical features remains unclear.

Among 26 unrelated patients with XLA, Vorechovsky et al. (1997) found 24 different mutations of the BTK gene. Most resulted in the premature termination of translation. Mutations were detected in most BTK exons with a predominance of frameshift and nonsense mutations in the 5-prime end of the gene and missense mutations in its 3-prime part, corresponding to the catalytic domain of the enzyme.

Conley et al. (1998) analyzed 101 families in which affected males were diagnosed as having XLA. Mutations in the BTK gene were identified in 38 of 40 families with more than 1 affected family member and in 56 of 61 families with sporadic disease. Excluding the patients in whom the marked decrease in B cell numbers characteristic of XLA could not be confirmed by immunofluorescence studies, mutations in BTK were identified in 43 of 46 patients with presumed sporadic XLA. Two of the 3 remaining patients had defects in other genes required for normal B cell development, namely the mu heavy chain gene (IGHM1; 147020), as reported by Yel et al. (1996) or the lambda-5/14.1 surrogate light chain gene (IGLL1; 146770), as reported by Minegishi et al. (1998). Both of these patients were compound heterozygotes and there were no clinical features that would distinguish them from patients with typical XLA. An Epstein-Barr virus-transformed cell line from a third patient had normal BTK cDNA by SSCP, normal BTK message by Northern blot, and normal BTK protein by Western blot. Therefore, it is unlikely that this patient had XLA. Ten mutations were found in more than one family; 1 of these occurred in 3 families. Of the 83 unique mutations included in the study of Conley et al. (1998), 43 had been described previously by their laboratory, 5 had been reported by other groups, and 35 had not been previously described.

In a study of 12 Korean patients with X-linked agammaglobulinemia, Jo et al. (2001) identified 7 mutations in the BTK gene, including a point mutation in intron 1 (300300.0055). Luciferase analysis showed reduced transcriptional activity in the intron-1 mutant compared with the wildtype. EMSA and functional analysis indicated that a nuclear protein had the ability to bind to the intron-1 mutant oligonucleotides. Jo et al. (2001) proposed that several regulatory elements mediate the transcriptional regulation of BTK and that the first intron is important in BTK promoter activity.

Sakamoto et al. (2001) suggested maternal germinal mosaicism to explain the finding of 2 sibs with XLA who had a single base deletion (563C) in exon 6 of the BTK gene and whose mother had no evidence of the mutation. Cytoplasmic expression of BTK protein in monocytes was not detected in either patient; normal cytoplasmic expression of BTK protein was found in monocytes of the mother.

Martin et al. (2001) identified a 2-bp deletion in the BTK gene (300300.0054) in a patient with X-linked agammaglobulinemia who developed classic type I diabetes (see 222100) at the age of 14 years. Autoantibodies associated with type I diabetes were undetectable, a result consistent with the diagnosis of X-linked agammaglobulinemia. The patient's HLA type was the one that is associated with the highest genetic risk of type I diabetes. The data implied that autoantibodies are not required for either the initiation or the progression of type I diabetes. Martin et al. (2001) concluded that type I diabetes can develop in the absence of both autoantibodies and B cells. This aspect of its pathogenesis places type I diabetes in marked contrast to spontaneous autoimmune diabetes in NOD mice, which has been claimed to be B cell-dependent. The findings suggested that immunotherapy directed specifically toward B cells or autoantibodies may not be effective in preventing the destruction of beta cells.

Wattanasirichaigoon et al. (2006) reported 7 different mutations in the BTK gene among 7 patients with XLA; 4 of the mutations were novel. Six patients were Thai, and 1 patient was Burmese.

About 60% of DCLRE1C (605988) and IGHM (147020) gene defects involve gross deletions, compared with about 6% of BTK gene defects. Van Zelm et al. (2008) compared gross deletion breakpoints involving DCLRE1C, IGHM, and BTK to identify mechanisms underlying these differences in gross deletion frequencies. Their analysis suggested that gross deletions involve transposable elements or large homologous regions rather than recombination motifs. Van Zelm et al. (2008) hypothesized that the transposable element content of a gene is related to its gross deletion frequency.

Isolated Growth Hormone Deficiency III with Agammaglobulinemia

Duriez et al. (1994) found an exon-skipping mutation (300300.0004) in the BTK gene in a sporadic case of X-linked agammaglobulinemia and isolated growth hormone deficiency (IGHD3; 307200).

In 2 patients with growth hormone deficiency and agammaglobulinemia (patients 14 and 19), previously reported by Conley et al. (1991), Conley et al. (1994) identified mutations in the BTK gene, Y375X (300300.0030) and L542P (300300.0040), respectively.

BTK Mutation Database

Vihinen et al. (1996) described a database of BTK mutations (BTKbase) listing entries from 189 unrelated families showing 148 unique molecular events. Information was included regarding the phenotype. Mutations in all 5 domains of BTK had been observed to cause XLA, the most common class of changes being missense mutations. The mutations appeared almost uniformly throughout the molecule and frequently affected CpG sites forming arginine residues. Vihinen et al. (1999) reported that BTKbase listed 544 mutation entries from 471 unrelated families showing 341 unique molecular events. In addition to mutations, a number of variants or polymorphisms had been found. Most mutations led to truncation of the enzyme, and about one-third of point mutations affected CpG sites.


Animal Model

Presumably the X-linked B-lymphocyte defect of mice, studied by Marshall-Clarke et al. (1979), is homologous. This defect is characteristic of the CBA-N strain of mice (Scher et al., 1975). Defective mice lack the subpopulation of B lymphocytes responsive to certain T-independent antigens of which trinitrophenylated (TNP)-Ficoll is the prototype. Their responses to T-dependent antigens may also be impaired and they are unable to respond to the hapten phosphorylcholine (PC). They lack those B cells that form colonies when cultured in vitro.

Cohen et al. (1985) isolated a cDNA probe recognizing a family of genes, called XLR, on the mouse X chromosome, at least some members of which are closely linked to the X-linked immunodeficiency (xid) trait.

Linkage studies involving 1,114 progeny backcross revealed colocalization of the xid mutation in mice with the Btk gene (Thomas et al., 1993). The xid mutation was associated in mice with a missense mutation that altered the highly conserved arginine near the N terminus of the Btk protein. Because this region of the protein lies outside any obvious kinase domain, the xid mutation may define another aspect of tyrosine kinase. Rawlings et al. (1993) likewise mapped the xid and the Btk gene to the same region and demonstrated the same missense mutation, an arg28-to-cys change.

Drabek et al. (1997) generated transgenic mice in which expression of the human BTK gene was driven by the murine class II major histocompatibility complex Ea gene locus control region, which provides gene expression from the pre-B cell stage onwards. When these transgenic mice were mated onto a Btk(-) background, correction of the xid B cell defects was observed: B cells differentiated to mature low IgM/high IgD stages, peritoneal CD5(+) B cells were present, and serum immunoglobulin levels and in vivo responses to antigens were in the normal ranges. A comparable rescue by transgenic Btk expression was also observed in heterozygous Btk +/- female mice in those B-lineage cells that were Btk-deficient as a result of X-chromosome inactivation.

Kawakami et al. (2006) found that dendritic cells of Btk-null mice exhibited a more mature phenotype and a stronger in vitro and in vivo T cell-stimulatory ability than wildtype cells. Increased IgE responses were induced by adoptive transfer of Btk-null dendritic cells into wildtype mice. Consistent with the stronger T cell-stimulatory ability of Btk-null dendritic cells, Btk-null mice exhibited enhanced inflammation in T helper cell 2-driven asthma and T helper cell 1-driven contact sensitivity experiments. The negative regulatory functions of Btk in dendritic cells appeared to be mediated mainly through autocrine secretion of IL10 (124092) and subsequent activation of Stat3 (102582).

Using Tec (600583) -/- Btk -/- double-knockout mice, Shinohara et al. (2008) showed that these tyrosine kinases were crucial in Rankl (TNFSF11; 602642)-induced osteoclastogenesis. In response to Rankl stimulation, Btk and Tec formed a signaling complex required for osteoclastogenesis with adaptor molecules such as Blnk (604515), which also recruited Syk (600085), linking Rank (TNFRSF11A; 603499) and ITAM (see 608740) signals to phosphorylate Plc-gamma (see 172420). Tec kinase inhibition reduced osteoclastic bone resorption in models of osteoporosis and inflammation-induced bone destruction. Shinohara et al. (2008) concluded that their studies provided a link between immunodeficiency and abnormal bone homeostasis owing to defects in signaling molecules shared by B cells and osteoclasts.

Mao et al. (2020) found that Btk -/- mice were more susceptible to experimental colitis than wildtype mice. Increased colitis in Btk -/- mice was largely due to excess Il1-beta (IL1B; 147720) secretion arising from increased Nlpr3 inflammasome activity. Consequently, blockade of Il1-beta ameliorated increased colitis in Btk -/- mice. Treatment of wildtype mice with a Btk inhibitor revealed that, similar to in vitro studies, Btk inhibition regulated Nlrp3 inflammasome activation in vivo in a dose-dependent manner. Mice treated with low-dose inhibitor phenocopied Btk -/- mice and exhibited increased susceptibility to experimental colitis, whereas mice treated with high-dose inhibitor exhibited the opposite effects.


ALLELIC VARIANTS ( 56 Selected Examples):

.0001 AGAMMAGLOBULINEMIA, X-LINKED

BTK, ARG525GLN
  
RCV000012095...

In a patient with X-linked agammaglobulinemia (XLA; 300755), Vetrie et al. (1993) identified a G-to-A transition at nucleotide 1706 in the BTK gene, resulting in a change of arginine-525 to glutamine. This conserved amino acid substitution was predicted to have a highly detrimental effect on the catalytic function of the putative protein-tyrosine kinase. Loss of the conserved arg525 could prevent substrate recognition because this residue is thought to be important in the substrate-specific domain. Ohta et al. (1994) also described the arg525-to-gln mutation in a family in which the diagnosis of common variable immunodeficiency disease had been made.


.0002 AGAMMAGLOBULINEMIA, X-LINKED

BTK, LYS430GLU
  
RCV000012096

In a patient with X-linked agammaglobulinemia (XLA; 300755), Vetrie et al. (1993) identified an A-to-G transition at position 1420 in the BTK gene, resulting in a substitution of glutamic acid for lysine-430. Substitution of lys430 (equivalent to lys295 of v-src) within the ATP-binding site would completely abolish kinase activity.


.0003 AGAMMAGLOBULINEMIA, X-LINKED

BTK, TYR361CYS
  
RCV000012099...

Like most other cytoplasmic tyrosine kinases, the Bruton tyrosine kinase contains a unique amino terminal region, SH3 and SH2 domains (short for SRC homology 3 and 2, respectively), and a carboxy-terminal kinase domain. In a patient with atypical X-linked agammaglobulinemia (XLA; 300755), Saffran et al. (1994) found a point mutation in the SH2 domain of BTK in a B-cell line. SH2 domains are critical mediators of binding with phosphotyrosine-containing proteins in the cell. The mutation was located in what crystal-structure studies of the SRC SH2 domain predict is a critical hydrophobic binding pocket. The consequence of this mutation is predicted to be decreased stability of the BTK protein, possibly resulting from the inability of BTK to interact with important substrates. The patient was a 23-year-old man who was the oldest of 3 brothers previously described as having atypical X-linked agammaglobulinemia by Conley and Puck (1988). A diagnosis of hypogammaglobulinemia was made when the proband was 6 years old and his brothers were 5 and 2 years old. Without therapy, the patient's serum IgG concentration was 590 mg per deciliter. All 3 brothers had 0.3 to 2% B cells in the peripheral circulation, whereas patients with typical Bruton agammaglobulinemia have a mean of 0.1% and normal subjects have 5 to 15% B cells. Although the patient complied poorly with therapy, he had not had serious infections. The single point mutation found in the SH2 domain of the coding sequence changed amino acid residue 361 from tyrosine to cysteine as a result of a TAC-to-TGC transition. Buckley (1994), who provided a diagram of the structure of the BTK protein, suggested that some of the other less severe antibody-deficiency syndromes in humans could be caused by mutations in the non-kinase portions of the BTK gene. In addition, she pointed with interest to the fact that BTK is also expressed in cells of the myeloid lineage and that it is well known that intermittent neutropenia occurs in boys with X-linked agammaglobulinemia, particularly at the height of an acute infection (Buckley and Rowlands, 1973). She raised the possibility that BTK is only one of the signaling molecules in myeloid maturation and that neutropenia may develop in X-linked agammaglobulinemia only when white cell production is rapid.

In a patient with mild X-linked agammaglobulinemia, Conley et al. (1994) identified an A-to-G transition in exon 12, resulting in a substitution of cysteine for tyrosine-361.


.0004 ISOLATED GROWTH HORMONE DEFICIENCY, TYPE III, WITH AGAMMAGLOBULINEMIA

BTK, IVS17DS, G-A, +5
  
RCV000012100

In a sporadic case of the syndrome of X-linked agammaglobulinemia and isolated growth hormone deficiency (IGHD3; 307200), Duriez et al. (1994) analyzed the BTK gene by RT-PCR, sequencing of cDNA and genomic DNA, and in vitro splicing assays to demonstrate an intronic point mutation, 1882+5G-A, located in the tyrosine kinase domain. This exon-skipping event resulted in a frameshift leading to a premature stop codon 14 amino acids downstream and in the loss of the last 61 residues of the carboxy-terminal end of the protein. The possibility that a mutant form of BTK may give rise to XLA alone in most cases but that some mutant forms can generate both XLA and IGHD suggests that the BTK gene is expressed in the pituitary gland. To test this hypothesis, Duriez et al. (1994) carried out 30 cycles of RT-PCR on mRNA from pituitaries, and the product was sequenced. This led to the detection of a specific BTK amplification product of expected size and sequence. The finding tempted Duriez et al. (1994) to speculate that the protein tyrosine kinase encoded by the BTK gene plays a role in the biosynthesis or secretion of growth hormone and that some mutant forms of the BTK protein can impair both the production of growth hormone and the development of B lineage cells. They stated that 'characterisation of additional BTK gene mutations in the rare patients inheriting both XLA and IGHD is eagerly awaited.'


.0005 AGAMMAGLOBULINEMIA, X-LINKED

BTK, ARG28HIS
  
RCV000012101...

Ohta et al. (1994) described cases of X-linked agammaglobulinemia (XLA; 300755) with a G-to-A transition at nucleotide 215 of the BTK gene, resulting in an arg28-to-his (R28H) amino acid replacement. The same amino acid change occurs as the cause of xid in the mouse but the mutation is a C-to-T transition at nucleotide 214. The arg28-to-his mutation was described in a case of XLA by de Weers et al. (1994).

Wood et al. (2001) found the R28H mutation in a 25-year-old man with a selective antipolysaccharide antibody deficiency whose IgG levels had fallen slightly below the normal range since the age of 23 years but who had remained well on antibiotic prophylaxis for 12 years. The authors suggested that male patients with antipolysaccharide antibody deficiency should be evaluated for B-cell lymphopenia and BTK mutations.


.0006 AGAMMAGLOBULINEMIA, X-LINKED

BTK, MET1THR
  
RCV000012102...

Bykowsky et al. (1996) described 2 brothers with a T-to-C transition at nucleotide 134 of the BTK gene that resulted in a change of the translation initiation ATG (met) to ACG (thr). The brothers had different clinical and laboratory phenotypes. The proband lacked immunoglobulins and B cells and had recurrent infections, whereas his older affected brother had normal levels of IgG and IgM and very few infections. Both had undetectable levels of BTK kinase activity in circulating mononuclear cells. Complete sequencing of the BTK gene transcripts in both brothers revealed no additional mutations to account for the discordant phenotypes.


.0007 HYPOGAMMAGLOBULINEMIA, X-LINKED

BTK, ALA-ASP, 1952C-A
   RCV000012103

Jones et al. (1996) described 3 brothers affected by immunodeficiency characterized by low B cell numbers and hypogammaglobulinemia (XLA; 300755), but normal T cell numbers and function. One brother presented at the age of 2 years with pneumococcal pneumonia and empyema requiring thoracotomy. He had a history of recurrent chest infections and severe otitis media. He developed pneumococcal meningitis at 5 years, at which time the diagnosis of hypogammaglobulinemia was first made. The second brother presented at the age of 2 years with a cervical abscess, followed several months later by an episode of pneumococcal meningitis. At 3 years he developed pneumococcal pericarditis requiring pericardiectomy. This occurred concurrently with his elder brother's pneumococcal meningitis, and as a result both boys were investigated and found to have hypogammaglobulinemia. Both boys received routine immunizations as well as Pneumovax. The third brother was identified by screening at the age of 8 weeks because of immunodeficiency in the older brothers. None of the brothers had received regular immunoglobulin replacement treatment. Analysis of cDNA prepared from the 3 affected brothers identified a single nucleotide alteration (C-to-A) at nucleotide 1952 (1952C-A) of the BTK gene. This resulted in a nonpolar-to-polar amino acid substitution (alanine to aspartic acid) in the kinase domain near the C-terminal end of the BTK protein.


.0008 AGAMMAGLOBULINEMIA, X-LINKED

BTK, ARG13TER
  
RCV000012097

In 2 patients with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a C-to-T transition at a CpG dinucleotide in exon 2 of the BTK gene, resulting in a stop codon at position 13 and a truncated protein.


.0009 AGAMMAGLOBULINEMIA, X-LINKED

BTK, GLN15TER
  
RCV000012098...

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a C-to-T transition at a CpG dinucleotide in exon 2 of the BTK gene, resulting in a stop codon at position 15 and a truncated protein.


.0010 AGAMMAGLOBULINEMIA, X-LINKED

BTK, THR33PRO
  
RCV000012104

In 2 patients with severe X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) identified an A-to-C transversion at position 229 of the BTK gene, resulting in a substitution of proline for threonine-33 in the pleckstrin homology domain.


.0011 AGAMMAGLOBULINEMIA, X-LINKED

BTK, 4-BP DEL, CODON 76, GAAA
  
RCV000012105

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a 4-bp (GAAA) deletion at codons 76 and 77 in exon 3 of the BTK gene, resulting in a frameshift and a premature stop codon at position 120.


.0012 AGAMMAGLOBULINEMIA, X-LINKED

BTK, 2-BP DEL, IVS2DS, +3AA
  
RCV000012106

In a patient with X-linked agammaglobulinemia (XLA; 300755), Hagemann et al. (1994) identified a 2-bp deletion at the 5-prime end of intron 2 of the BTK gene. Two adenines were deleted from positions +3 and +4 of the consensus sequence GTAAGT at the donor splice site. Although the deletion does not break the GT/AG boundary rule, the resulting donor splice site does not match the consensus sequence, and the mutation would most likely result in exon 2 skipping. This would remove the 5-prime end of the coding sequence, including the translation start site and the PH domain.


.0013 AGAMMAGLOBULINEMIA, X-LINKED

BTK, IVS4AS, G-C, -1
  
RCV000012107...

In a patient with X-linked agammaglobulinemia (XLA; 300755), Hagemann et al. (1994) identified a G-to-C transversion at the first nucleotide of the acceptor splice site of intron 4 in the BTK gene, which breaks the GT/AG exon-intron boundary rule. The skipping of exon 5 would cause a frameshift.


.0014 AGAMMAGLOBULINEMIA, X-LINKED

BTK, 21-BP INS, NT442
  
RCV000012108

In a patient with X-linked agammaglobulinemia (XLA; 300755), Bradley et al. (1994) identified a 21-bp insertion at position 442 in the 5-prime terminal region of the BTK gene, resulting in an in-frame insertion of 7 amino acids (ser-val-phe-ser-ser-thr-arg) between amino acids 103 and 104 in the protein. Hagemann et al. (1994) found that the inserted sequence matched the 3-prime acceptor sequence of intron 4 except for an A-to-G transition at position -2 from the 3-prime end. This base substitution breaks the GT/AG boundary rule. An alternative splice site 22-bp upstream of the normal 3-prime intron boundary matches the AG acceptor consensus sequence and would explain the 21-bp inserted sequence from the patient's cDNA.


.0015 AGAMMAGLOBULINEMIA, X-LINKED

BTK, VAL113ASP
  
RCV000012109

In a patient with severe X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a T-to-A transversion in exon 5 of the BTK gene, resulting in a substitution of aspartic acid for valine-113 in the pleckstrin homology domain. This patient was below the fifth percentile in height, but when evaluated for growth hormone deficiency, was found to have normal growth hormone production. It is possible that other genetic or environmental factors, in concert with absent or defective Btk, cause growth hormone deficiency.


.0016 AGAMMAGLOBULINEMIA, X-LINKED

BTK, 1-BP DEL, CODON 130, A
  
RCV000012110

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a 1-bp (A) deletion at codon 130 in exon 5 of the BTK gene, resulting in a frameshift.


.0017 AGAMMAGLOBULINEMIA, X-LINKED

BTK, 1-BP INS, CODON 186, A
  
RCV000012111...

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a 1-bp (A) insertion at codon 186 in exon 7 of the BTK gene, resulting in a frameshift.


.0018 AGAMMAGLOBULINEMIA, X-LINKED

BTK, 8-BP INS, NT721
  
RCV000012112

In a patient with X-linked agammaglobulinemia (XLA; 300755), de Weers et al. (1994) identified an 8-bp (CTACATAG) insertion at position A721 in the N-terminal region of the BTK gene, resulting in a frameshift and a truncated protein.


.0019 AGAMMAGLOBULINEMIA, X-LINKED

BTK, 1-BP DEL, CODON 218, A
  
RCV000012113

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a 1-bp (A) deletion at codon 218 in exon 8 of the BTK gene, resulting in a frameshift.


.0020 AGAMMAGLOBULINEMIA, X-LINKED

BTK, GLU240TER
  
RCV000012114

In a patient with severe X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) identified a G-to-T transversion in the BTK gene, resulting in a stop codon at position 240 and a truncated protein. This mutation was found in the SH3 domain.


.0021 AGAMMAGLOBULINEMIA, X-LINKED

BTK, TRP252TER
  
RCV000012115...

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a G-to-A transition in exon 8 of the BTK gene, resulting in a stop codon at position 252 and a truncated protein. This mutation was found in the SH3 domain.


.0022 AGAMMAGLOBULINEMIA, X-LINKED

BTK, ARG255TER
  
RCV000012116...

In a patient with X-linked agammaglobulinemia (XLA; 300755), Bradley et al. (1994) identified a C-to-T transition at position 895 of the BTK gene, resulting in a stop codon at position 255 and a severely truncated protein lacking the remaining 404 amino acids, which include the SH2 and kinase domains. This patient and his brother have no detectable B-cells, confirming that the absence of the functional domains of Btk results in a classic XLA phenotype.


.0023 AGAMMAGLOBULINEMIA, X-LINKED

BTK, IVS9DS, G-A, +1
  
RCV000012117

In 2 patients with severe X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) identified a G-to-A transition at nucleotide 909 of the BTK gene, which is the first nucleotide of the donor splice site of intron 9. The mutation causes a deletion of 21 amino acids between residues gln260 and glu280 due to skipping of exon 9. This mutation was found in the SH3 domain.


.0024 AGAMMAGLOBULINEMIA, X-LINKED

BTK, 1-BP DEL/3-BP INS, CODON 261
   RCV000012118

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a 1-bp (G) deletion associated with a 3-bp (TTA) insertion at codon 261 in exon 9 of the BTK gene, resulting in a frameshift. This mutation was found in the SH3 domain.


.0025 AGAMMAGLOBULINEMIA, X-LINKED

BTK, ARG288TRP
  
RCV000012119...

In a patient with severe X-linked agammaglobulinemia (XLA; 300755), de Weers et al. (1994) identified a C-to-T transition at position 993 of the BTK gene, resulting in a substitution of tryptophan for arginine-288. This mutation was found in the SH2-like domain where arg288 is highly conserved and crucial for the interaction with the aromatic ring of phosphotyrosine. Therefore, the replacement of arg288 by a nonpolar tryptophan would entirely abrogate the formation of the high-affinity complex with phosphotyrosine.


.0026 AGAMMAGLOBULINEMIA, X-LINKED

BTK, ARG307GLY
  
RCV000012120

In a patient with severe X-linked agammaglobulinemia (XLA; 300755), Bradley et al. (1994) identified an A-to-G transition at position 1051 of the BTK gene, resulting in a substitution of glycine for arginine-307. This mutation was found in the SH2-like domain where arg307 is involved in the binding interactions at the base of the phosphotyrosine binding pocket. The change to a neutral glycine residue is highly likely to disrupt the binding potential of this region. This patient has less than 1% B cells and undetectable immunoglobulin levels, indicating that the replacement of this highly conserved arginine residue completely abolishes the functioning of Btk.


.0027 AGAMMAGLOBULINEMIA, X-LINKED

BTK, TYR334SER
  
RCV000012121

In a patient with X-linked agammaglobulinemia (XLA; 300755), Hagemann et al. (1994) identified an A-to-C transversion at position 1133 in exon 12 of the BTK gene, resulting in a substitution of serine for tyrosine-334. This mutation was found in the SH2-like domain where tyr334 is most likely responsible for the substrate recognition.


.0028 AGAMMAGLOBULINEMIA, X-LINKED

BTK, 1-BP DEL, IVS11DS, +1G
  
RCV000012122

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a 1-bp (G) deletion that occurred in a run of 3 Gs in the last codon (325) of exon 11 and the first nucleotide of intron 11 in the BTK gene. This mutation was found in the SH2 domain.


.0029 AGAMMAGLOBULINEMIA, X-LINKED

BTK, IVS12AS, A-T, -2
  
RCV001001214...

In 3 patients with moderate to severe X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) identified an A-to-T transversion at nucleotide 1235, which is the second nucleotide of the acceptor splice site of intron 12, in the BTK gene. The mutation causes a deletion of 12-bp between residues 1235-1247, a frameshift at codon 372, and a stop codon at position 398. This mutation was found in the SH2 domain.


.0030 ISOLATED GROWTH HORMONE DEFICIENCY, TYPE III, WITH AGAMMAGLOBULINEMIA

BTK, TYR375TER
  
RCV000012124

In a boy (patient 14) with X-linked agammaglobulinemia and isolated growth hormone deficiency (IGHD3; 307200), Conley et al. (1994) identified a T-to-G transversion in exon 13 of the BTK gene, resulting in a tyr375-to-ter (Y375X) substitution in the SH2 domain. The mutation was associated with an absence of Btk transcript. The boy did not experience major infections and responded well to growth hormone treatment.


.0031 AGAMMAGLOBULINEMIA, X-LINKED

BTK, 16-BP INS, NT1263
  
RCV000012125

In 4 patients with moderate X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) identified a 16-bp insertion (duplication) at position 1263 of the BTK cDNA, resulting in a frameshift and a premature stop codon in position 404. This mutation was found in the SH2 domain.


.0032 AGAMMAGLOBULINEMIA, X-LINKED

BTK, LEU408PRO
  
RCV000012126

In 2 patients with moderate X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) identified a T-to-C transition at position 1355 in the BTK gene, resulting in a substitution of proline for leucine-408. This mutation was found in the SH1 domain.


.0033 AGAMMAGLOBULINEMIA, X-LINKED

BTK, TYR425TER
  
RCV000012127

In a patient with severe X-linked agammaglobulinemia (XLA; 300755), de Weers et al. (1994) identified a C-to-A transversion at position 1407 in the BTK gene, resulting in a stop codon at position 425 and a truncated protein. This mutation was found in the ATP-binding site.


.0034 AGAMMAGLOBULINEMIA, X-LINKED

BTK, CYS502TER
  
RCV000012128

In a patient with severe X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) identified a C-to-A transversion at position 1638 of the BTK gene, resulting in a stop codon at position 502 and a truncated protein. This mutation was found in the SH1 domain.


.0035 AGAMMAGLOBULINEMIA, X-LINKED

BTK, CYS506ARG
  
RCV000012129...

In a patient with X-linked agammaglobulinemia (XLA; 300755), Hagemann et al. (1994) identified a T-to-C transition at position 1648 in exon 15 of the BTK gene, resulting in a substitution of arginine for cysteine-506 in the middle of the kinase domain. Whether this residue is directly involved in catalytic activity or substrate recognition is not clear.


.0036 AGAMMAGLOBULINEMIA, X-LINKED

BTK, ARG520TER
  
RCV000012130...

In 2 patients with moderate to severe X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) and Hagemann et al. (1994) identified a C-to-T transition at position 1690 of the BTK gene, resulting in a stop codon at position 520 (in the middle of the kinase domain) and a truncated protein.


.0037 AGAMMAGLOBULINEMIA, X-LINKED

BTK, ARG520GLN
  
RCV000012131...

In patients with severe X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) and Hagemann et al. (1994) identified a G-to-A transition at position 1691 in the BTK gene, resulting in a substitution of glutamine for arginine-520. Arg-520 is a highly conserved residue among all protein kinases. This mutation was found in the SH1 domain.


.0038 AGAMMAGLOBULINEMIA, X-LINKED

BTK, 1-BP DEL, 1720A
  
RCV000012132

In a patient with X-linked agammaglobulinemia (XLA; 300755), Hagemann et al. (1994) identified a 1-bp deletion (A1720) at codon 530 in exon 16, which is in the substrate specific portion of the SH1 domain in the BTK gene. This deletion results in a frameshift that generates a stop codon at nucleotide position 1796-1798 and eliminates the C-terminal portion of the catalytic domain.


.0039 AGAMMAGLOBULINEMIA, X-LINKED

BTK, 4-BP DEL, CODON 527, GTTT
  
RCV000582912...

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a 4-bp (GTTT) deletion at codons 527 and 528 in exon 16 of the BTK gene, resulting in a frameshift. The patient was the mother of a boy who died suddenly of bacterial sepsis at 11 months of age. The absence of germinal follicles in lymph nodes at autopsy examination of this child suggested the diagnosis of XLA despite the lack of family history of immunodeficiency. The mother was shown to be a carrier of XLA. Analysis of X-chromosome inactivation patterns and DNA demonstrated a pattern consistent with one normal allele and one abnormal allele on SSCP analysis of exon 16. This mutation was found in the kinase domain.


.0040 ISOLATED GROWTH HORMONE DEFICIENCY, TYPE III, WITH AGAMMAGLOBULINEMIA

BTK, LEU542PRO
  
RCV000012134...

In a boy (patient 19) with X-linked agammaglobulinemia and isolated growth hormone deficiency (IGHD3; 307200), Conley et al. (1994) identified a T-to-C transition in exon 16 of the BTK gene, resulting in a leu542-to-pro (L542P) substitution in the kinase domain. The patient had not experienced major infections and responded well to growth hormone replacement.


.0041 AGAMMAGLOBULINEMIA, X-LINKED

BTK, IVS16DS, G-T, +1
  
RCV000012135

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a G-to-T transversion at codon 544, which is the first nucleotide of the donor splice site of intron 16 in the BTK gene. The mutation preserved a potential splice donor site and the GT sequence was moved 5-prime by 1 basepair. Use of this splice site would result in a frameshift and a premature stop codon. This mutation was found in the kinase domain.


.0042 AGAMMAGLOBULINEMIA, X-LINKED

BTK, ARG562TRP
  
RCV000012136...

In a patient with mild X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) and Hagemann et al. (1994) identified a C-to-T transition in exon 17 of the BTK gene, resulting in a substitution of tryptophan for arginine-562. This mutation was found in the kinase domain. Whether this residue is directly involved in catalytic activity or substrate recognition is not clear.


.0043 AGAMMAGLOBULINEMIA, X-LINKED

BTK, TYR581ARG
  
RCV000012137

In a patient with mild X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a T-to-C transition in exon 17 of the BTK gene, resulting in a substitution of arginine for tyrosine-581. The wildtype tryptophan at this site is conserved in most serine/threonine kinases as well as in most tyrosine kinases. This mutation was found in the kinase domain.


.0044 AGAMMAGLOBULINEMIA, X-LINKED

BTK, GLU589GLY
  
RCV000012138

In 3 patients with moderate X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) identified an A-to-G transition at position 1898 in the BTK gene, resulting in a substitution of glycine for glutamic acid-589. This mutation was found in the SH1 domain.


.0045 AGAMMAGLOBULINEMIA, X-LINKED

BTK, TYR591TER
  
RCV000012139...

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a C-to-A transversion in exon 17 of the BTK gene, resulting in a stop codon at position 591 and a truncated protein. This mutation was found in the kinase domain.


.0046 AGAMMAGLOBULINEMIA, X-LINKED

BTK, ALA607ASP
  
RCV000012140

In 2 patients with mild X-linked agammaglobulinemia (XLA; 300755), Bradley et al. (1994) identified a C-to-A transition at position 1952 of the BTK gene, resulting in a substitution of aspartic acid for alanine-607 near the 3-prime end of the gene.


.0047 AGAMMAGLOBULINEMIA, X-LINKED

BTK, GLY613ASP
  
RCV000012141

In 2 patients with mild X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) identified a G-to-A transition at position 1970 of the BTK gene, resulting in a substitution of aspartic acid for glycine-613. This mutation was found in the SH1 domain.


.0048 AGAMMAGLOBULINEMIA, X-LINKED

BTK, MET630LYS
  
RCV000012142

In a patient with mild X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) and Hagemann et al. (1994) identified a T-to-A transversion in exon 18 of the BTK gene, resulting in a substitution of lysine for methionine-630. This mutation was found in the kinase domain. Whether this residue is directly involved in catalytic activity or substrate recognition is not clear.


.0049 AGAMMAGLOBULINEMIA, X-LINKED

BTK, GLU636TER
  
RCV000012143

In a patient with X-linked agammaglobulinemia (XLA; 300755), Bradley et al. (1994) identified a G-to-T transversion at nucleotide 2038 of the BTK gene, resulting in a stop codon at position 636 and a loss of the 24 terminal amino acids from the protein, including several highly conserved residues. As there are 3 affected boys in this family who have no detectable B-cells or immunoglobulin, it is likely that the last 24 amino acids of this protein are critical for its correct expression and/or function in B-cell development.


.0050 AGAMMAGLOBULINEMIA, X-LINKED

BTK, 6-BP INS, NT2041
  
RCV000012144

In a patient with X-linked agammaglobulinemia (XLA; 300755), de Weers et al. (1994) identified a 6-bp (TTTTAG) insertion at position A2041 in the C-terminal region of the BTK gene, resulting in a frameshift and a truncated protein.


.0051 AGAMMAGLOBULINEMIA, X-LINKED

BTK, LEU652PRO
  
RCV000012145

In a patient with mild X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a T-to-C transition in exon 19 of the BTK gene, resulting in a substitution of proline for leucine-652. This leucine defines the 3-prime border of the conserved kinase domain in many tyrosine kinases.


.0052 AGAMMAGLOBULINEMIA, X-LINKED

BTK, 26-BP INS, NT2019
   RCV000012146

In a patient with severe X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) identified a 26-bp insertion (duplication) at position 2019 in the BTK gene, resulting in a frameshift and a premature stop codon in position 653. This mutation was found in the SH1 domain.


.0053 AGAMMAGLOBULINEMIA, X-LINKED

BTK, ARG562PRO
  
RCV000012147...

Curtis et al. (2000) identified a missense mutation, 1817G-C (arg562 to pro; R562P), in exon 17 of the BTK gene in cousins with X-linked agammaglobulinemia (XLA; 300755). The same mutation was present in both mothers (twin sisters) of the cousins, identifying them as carriers. However, the mutation was absent in all other relatives including the grandmother of the cousins (mother of the twin sisters). This suggested that the mutation had originated in the germline of one of the grandparents or in the zygote.


.0054 AGAMMAGLOBULINEMIA, X-LINKED

BTK, 2-BP DEL, 54TG
  
RCV000012148

In a patient with X-linked agammaglobulinemia (XLA; 300755) who developed classic type I diabetes at the age of 14 years, Martin et al. (2001) identified a 2-bp deletion (TG) at nucleotides 54-55 in exon 8 of the BTK gene, resulting in a frameshift at codon 214 in the TH domain and a premature stop codon at position 223 in the SH3 domain of the BTK protein.


.0055 AGAMMAGLOBULINEMIA, X-LINKED

BTK, IVS1DS, G-A, +5
  
RCV000012149

In a Korean family with X-linked agammaglobulinemia (XLA; 300755), Jo et al. (2001) identified a point mutation in intron 1 of the BTK gene, a G-to-A transition at position +5.


.0056 AGAMMAGLOBULINEMIA, X-LINKED

BTK, 6.1-KB DEL
   RCV000012150

Jo et al. (2003) identified BTK mutations in 6 patients with presumed X-linked agammaglobulinemia (XLA; 300755) from unrelated Korean families. Of the 6 mutations, 4 were novel, including a 6.1-kb deletion including BTK exons 11-18. The large deletion, identified by long-distance PCR, revealed Alu-Alu mediated recombination that extended from an Alu sequence in intron 10 to another Alu sequence in intron 18, spanning a distance of 6.1 kb.


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  45. Uckun, F. M., Waddick, K. G., Mahajan, S., Jun, X., Takata, M., Bolen, J., Kurosaki, T. BTK as a mediator of radiation-induced apoptosis in DT-40 lymphoma B cells. Science 273: 1096-1099, 1996. [PubMed: 8688094, related citations] [Full Text]

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Bao Lige - updated : 04/06/2022
Carol A. Bocchini - updated : 10/29/2018
Patricia A. Hartz - updated : 2/2/2009
Paul J. Converse - updated : 11/21/2008
Cassandra L. Kniffin - updated : 10/13/2008
Patricia A. Hartz - updated : 5/2/2008
Cassandra L. Kniffin - updated : 3/21/2007
Paul J. Converse - updated : 4/11/2006
Patricia A. Hartz - updated : 3/27/2006
Victor A. McKusick - updated : 1/15/2004
Paul J. Converse - updated : 1/25/2002
Paul J. Converse - updated : 1/9/2002
Victor A. McKusick - updated : 10/30/2001
Deborah L. Stone - updated : 10/19/2001
Victor A. McKusick - updated : 3/13/2001
Victor A. McKusick - updated : 2/23/2000
Victor A. McKusick - updated : 9/23/1999
Victor A. McKusick - updated : 5/14/1999
Victor A. McKusick - updated : 5/15/1998
Victor A. McKusick - updated : 6/18/1997
Victor A. McKusick - updated : 2/12/1997
Moyra Smith - updated : 8/29/1996
Moyra Smith - updated : 3/13/1996
Creation Date:
Victor A. McKusick : 6/4/1986
mgross : 04/06/2022
carol : 10/30/2018
carol : 10/29/2018
terry : 03/28/2013
terry : 3/28/2013
terry : 10/3/2012
wwang : 2/17/2010
wwang : 9/23/2009
alopez : 6/2/2009
alopez : 5/6/2009
mgross : 2/2/2009
mgross : 12/19/2008
mgross : 12/18/2008
mgross : 11/25/2008
terry : 11/21/2008
wwang : 10/23/2008
ckniffin : 10/13/2008
mgross : 5/2/2008
mgross : 2/21/2008
wwang : 4/2/2007
carol : 3/28/2007
ckniffin : 3/21/2007
terry : 10/11/2006
mgross : 5/3/2006
terry : 4/11/2006
wwang : 4/4/2006
terry : 3/27/2006
ckniffin : 10/28/2004
carol : 3/17/2004
alopez : 1/15/2004
terry : 1/15/2004
carol : 6/11/2003
mgross : 1/25/2002
mgross : 1/9/2002
mcapotos : 11/14/2001
carol : 11/9/2001
mcapotos : 11/7/2001
terry : 10/30/2001
carol : 10/19/2001
carol : 10/19/2001
carol : 9/27/2001
cwells : 3/20/2001
terry : 3/13/2001
mcapotos : 1/22/2001
alopez : 2/25/2000
terry : 2/23/2000
alopez : 11/15/1999
mgross : 10/8/1999
terry : 9/23/1999
mgross : 6/3/1999
mgross : 5/26/1999
terry : 5/14/1999
dkim : 12/9/1998
alopez : 10/14/1998
carol : 8/18/1998
terry : 8/17/1998
dholmes : 7/9/1998
carol : 7/2/1998
terry : 6/4/1998
alopez : 6/3/1998
terry : 5/15/1998
mark : 12/22/1997
mark : 11/21/1997
alopez : 7/30/1997
terry : 7/24/1997
mark : 7/8/1997
carol : 6/23/1997
jenny : 6/23/1997
mark : 6/18/1997
mark : 2/12/1997
terry : 2/6/1997
terry : 1/7/1997
jenny : 12/9/1996
terry : 11/18/1996
mark : 11/12/1996
mark : 11/11/1996
mark : 8/29/1996
carol : 7/6/1996
joanna : 3/22/1996
mark : 3/13/1996
terry : 3/13/1996
mark : 3/13/1996
mark : 3/13/1996
terry : 3/12/1996
mark : 3/6/1996
terry : 3/4/1996
mark : 10/24/1995
terry : 8/10/1995
davew : 8/25/1994
jason : 7/15/1994
mimadm : 5/12/1994
warfield : 3/21/1994

* 300300

BRUTON AGAMMAGLOBULINEMIA TYROSINE KINASE; BTK


Alternative titles; symbols

AGAMMAGLOBULINEMIA TYROSINE KINASE; ATK
B-CELL PROGENITOR KINASE; BPK


HGNC Approved Gene Symbol: BTK

SNOMEDCT: 234533006, 65880007;  


Cytogenetic location: Xq22.1     Genomic coordinates (GRCh38): X:101,349,450-101,390,796 (from NCBI)


Gene-Phenotype Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Xq22.1 Agammaglobulinemia, X-linked 1 300755 X-linked recessive 3
Isolated growth hormone deficiency, type III, with agammaglobulinemia 307200 X-linked recessive 3

TEXT

Description

BTK is a key regulator of B-cell development (Rawlings and Witte, 1994).


Cloning and Expression

Using a positional cloning strategy to identify genes within the XLA locus on the X chromosome, followed by screening a cDNA library derived from a Burkitt lymphoma cell line, Vetrie et al. (1993) isolated BTK, which they called ATK. The ORF of ATK encodes a 659-amino acid polypeptide. Two alternative initiation codons within the same ORF would result in peptide chains of 571 and 497 amino acids, respectively, if used. ATK shares a high degree of similarity with members of the SRC (190090) family of protooncogenes that encode protein-tyrosine kinases. Northern blot analysis of RNAs derived from lymphoid lineages demonstrated that the 2.6-kb ATK mRNA was expressed in a B-cell line and in B cells of 2 patients with chronic lymphocytic leukemia, but not in T cells or a T-cell line.

Desiderio (1993) compared the structure of ATK and LTK (151520) with SRC.

Tsukada et al. (1993) independently described BTK as a cytoplasmic tyrosine kinase that they termed BPK. BPK was expressed in all cells of the B lineage and in myeloid cells. Tsukada et al. (1993) concluded that BPK is not a member of the SRC family based on the following differences: (1) the kinase catalytic domain contains the sequence DLAARN, which is similar to ABL (189980), FPS (190030), and CSK (124095), but different from the SRC family (DLRAAN); (2) BPK lacks the consensus myristoylation signal (glycine at position 2 and lysine or arginine at position 7); (3) BPK lacks the equivalent of tyrosine 527 in SRC in the C-terminal domain following the kinase sequences, which is important in regulation of kinase activity; and (4) the N-terminal region of BPK is unusually long.


Gene Structure

Rohrer et al. (1994) determined the genomic organization of the BTK gene. BTK contains 19 exons and spans 37 kb. The region 5-prime to the first untranslated exon lacks TATAA or CAAT boxes, but it contains 3 retinoic acid-binding sites.


Mapping

By in situ hybridization, Vetrie et al. (1993) mapped the BTK gene to chromosome Xq21.3-q22. Oeltjen et al. (1995) concluded that the 3-prime end of the GLA gene (300644) is 9 kb from the 5-prime end of the BTK gene, and they found 2 additional genes in the region immediately 5-prime to BTK.


Gene Function

Tsukada et al. (1993) found that BPK mRNA, protein expression, and kinase activity were all reduced or absent in XLA pre-B and B cell lines.

Although evidence from the study of XLA indicated that BTK plays a crucial role in B-lymphocyte differentiation and activation, its precise mechanism of action remained unknown, primarily because the proteins that it interacts with had not been identified until the work of Cheng et al. (1994). They showed that BTK interacted with SRC homology 3 domains of FYN (137025), LYN (165120), and HCK (142370). All of these are protein-tyrosine kinases that are activated upon stimulation of B- and T-cell receptors. These interactions were mediated by two 10-amino acid motifs in BTK. An analogous site with the same specificity was also identified in ITK (186973), the T-cell-specific homolog of BTK. The findings of Cheng et al. (1994) extended the range of interactions mediated by SRC homology 3 domains and provided an indication of a link between BTK and previously established signaling pathways in B lymphocytes.

Uckun et al. (1996) noted that a number of human diseases including immune deficiencies apparently stem from inherited or acquired deficiencies of checkpoints that regulate the rate of apoptosis in lymphoid cells. Uckun et al. (1996) reported that DT-40 lymphoma B cells rendered BTK deficient through targeted disruption of the BTK gene did not undergo radiation-induced apoptosis. They further demonstrated that the tyrosine kinase domain of BTK was necessary for triggering radiation-induced apoptosis.

Ng et al. (2004) tested the specificity of recombinant antibodies from single peripheral B cells isolated from patients with XLA and found that XLA B cells were selected to express a unique antibody repertoire using distinct VH and D genes favoring hydrophobic reading frames normally counterselected in healthy donor B cells. Patient B cells appeared to undergo extensive secondary recombination on both IgK (see 147200) and IgL (see 147220) loci and had a slightly increased proportion of cells expressing antinuclear antibodies. Ng et al. (2004) concluded that almost half of the antibodies expressed by XLA B cells are polyreactive and that BTK is essential for removal of autoreactive B cells.

Hantschel et al. (2007) identified the BTK tyrosine kinase and TEC kinase (600583) as major binders of the tyrosine kinase inhibitor dasatinib, which is used for treatment of BCR/ABL (see 151410)-positive CML (608232). Dasatinib did not bind ITK. In a CML cell line, they determined that a thr474-to-ile (T474I) substitution in the BTK gene conferred resistance to dasatinib. They suggested that, like the structurally homologous thr315 residue in the ABL gene (see 189980.0001), the BTK thr474 residue is the gatekeeper residue critical for dasatinib binding. Analysis of mast cells derived from Btk-deficient mice suggested that inhibition of Btk by dasatinib may be responsible for the observed reduction in histamine release upon dasatinib treatment. Dasatinib inhibited histamine release in primary human basophils and secretion of proinflammatory cytokines in immune cells. The findings suggested that dasatinib may have immunosuppressive side effects.

Using ELISA, microarray analysis, RT-PCR, and flow cytometry, Hasan et al. (2007) demonstrated that Btk -/- mouse B cells responded more efficiently to CpG-DNA stimulation by producing higher levels of proinflammatory cytokines and Il27 (608273), but lower levels of the inhibitory cytokine Il10 (124092). Tlr9 (605474) protein and mRNA expression was enhanced in Btk -/- cells, especially after Tlr9 stimulation. Whereas Btk -/- and wildtype transitional stage-1 (T1) B cells failed to proliferate and died after CpG stimulation, T2 cells, expressing higher levels of Tlr9, proliferated and matured. Hasan et al. (2007) concluded that BTK regulates both TLR9 activation and expression in B lymphocytes and is necessary for inhibitory cytokine expression.

Using bone marrow-derived macrophages (BMDMs) from mice and humans with genetic BTK deficiency, Mao et al. (2020) found that BTK regulated NLRP3 (606416) inflammasome activation, but not other inflammasomes. Similarly, exposure to low concentrations of a BTK inhibitor upregulated NLRP3 inflammasome activity, whereas high concentrations of the inhibitor caused BTK-independent inhibition of NLRP3 inflammasome activity. Overexpression and knockout analyses revealed that BTK interacted with NLRP3 and regulated its phosphorylation and oligomerization, thereby modulating NLRP3 inflammasome activation. In addition, BTK downregulated NLRP3 interaction with ASC (PYCARD; 606838) and ASC assembly. BTK also inhibited NLRP3 interaction with NEK7 (606848), thereby inhibiting NEK7 phosphorylation and oligomerization. Mutation analysis showed that the PH and PTK domains of BTK interacted with the pyrin and NACHT domains of NLRP3. The PTK domain containing the BTK kinase site played a critical role in BTK inhibition of the NLRP3 inflammasome, as BTK kinase activity was required for its inhibitory function. BTK interacted with protein PP2A (PPP2CA; 176915) and upregulated PP2A phosphorylation at tyr307. Phosphorylation of PP2A temporarily inactivated PP2A and prevented it from dephosphorylating ser5 in the NLRP3 pyrin domain, leading to inhibition of the NLRP3 inflammasome. Further analysis demonstrated that the different dosage-dependent effects of BTK inhibitors on NLRP3 inflammasome activity were due to the differential effects of the inhibitors on the interaction of NLRP3 with its downstream NLRP3 inflammasome components and on the generation of NLRP3 inflammasome products. Inhibition of the NLRP3 inflammasome by high-dose BTK inhibitor was likely an off-target effect of the inhibitors on JNK (601158) activity.


Biochemical Features

Vihinen et al. (1994) used a 3-dimensional model for the BTK kinase domain, based on the core structure of cAMP-dependent protein kinase, to interpret the structural basis for disease in 8 independent point mutations in patients with XLA. Because arg525 of BTK had been thought to substitute functionally for a critical lysine residue in protein-serine kinases, they studied the arg525-to-gln mutation and found that it abrogated the tyrosine kinase activity of BTK. All of the 8 mutations, including lys430-to-glu (300300.0002), were located on one face of the BTK kinase domain, indicating structural clustering of functionally important residues.

Mao et al. (2001) determined the x-ray crystal structure of the BTK kinase domain in its unphosphorylated state to 2.1-angstrom resolution. The structure suggested that the trans-phosphorylation of tyr551 can lead to BTK activation by triggering an exchange of hydrogen-bonded pairs from glu445/arg544 to glu445/lys430 and subsequent relocation of helix alpha-C of the N-terminal lobe. The model also indicated that mutations in the C-terminal lobe of the kinase domain, such as R562W (300300.0042), are directly or indirectly involved in peptide substrate binding. Other disease-associated mutations in this domain (e.g., E589G; 300300.0044) alter interactions with neighboring residues.


Molecular Genetics

X-linked agammaglobulinemia (XLA; 300755) is an immunodeficiency characterized by failure to produce mature B lymphocytes and associated with a failure of Ig heavy chain rearrangement. Using probes derived for the Southern analysis of DNA from 33 unrelated families and 150 normal X chromosomes, Vetrie et al. (1993) detected restriction pattern abnormalities in 8 families with XLA. Five of them had deletions that were shown to be entirely intragenic to BTK, confirming involvement of BTK in XLA. Two single-base missense mutations were identified in XLA patients. The failure of pre-B cells in the bone marrow of XLA males to develop into mature, circulating B cells could be the result of the product of the mutant ATK gene failing to fulfill its role in B-cell signaling. Vetrie et al. (1993) noted that inactivation of the mouse Lck gene (153390), another member of the SRC family of tyrosine kinases, results in a thymocyte differentiation defect.

Parolini et al. (1993) identified a family in which a healthy father transmitted the XLA defect to 2 of his daughters, indicating gonadal or somatic mosaicism. To assess the frequency of this phenomenon, Conley et al. (1998) evaluated 11 sisters of 7 women who were carriers of XLA and whose mutation occurred on the paternal haplotype. None of the 11 sisters were carriers of the mutations seen in their nephews.

Vorechovsky et al. (1993) pointed out that common variable immunodeficiency (CVID) is sometimes clinically and immunologically indistinguishable from XLA if it starts early in childhood and occurs sporadically in males with a decreased number of B cells. Using a cDNA clone that represented the full-length ATK (BTK) cDNA, Vorechovsky et al. (1993) did Southern blot analysis of 39 Swedish male patients diagnosed with CVID or possible CVID. One man in his late 40s, who had had recurrent respiratory infections from infancy, lacked immunoglobulins of all isotypes, and had less than 1% B cells among peripheral blood mononuclear cells, had an abnormality of the ATK gene. The abnormality was missing in his mother but had been inherited by both of his daughters.

Vorechovsky et al. (1993) failed to find the arg28-to-cys mutation, which is found in xid in mice (see ANIMAL MODEL), in 13 unrelated patients with XLA and 2 patients with XLA and growth hormone deficiency (IGHD3; 307200). They pointed to the milder phenotype of the xid mouse compared to XLA cases and suggested that if this particular mutation occurs in the human BTK gene, it might result in a milder phenotype with normal or only moderately reduced B cells and more selective immunoglobulin deficiency in boys, which may or may not increase susceptibility to infections.

Ohta et al. (1994) reported the DNA sequence of the 18 coding exons of BTK and their flanking regions. Correlations were made between the nature of mutations and the organization of the BTK gene. They found several examples of the same mutation occurring in unrelated patients, and one of these mutations occurred at the same codon that is substituted in the xid mouse. However, in xid, the mutation occurs at the first position in the conserved arginine codon, 214C-T, and results in an arg28-to-cys substitution, whereas in human cases it occurs at the second nucleotide, 215G-A, and results in an arg28-to-his amino acid change (300300.0005). The observations suggested that a limited number of deleterious changes in BTK produce clinically recognizable XLA. XLA patients have been classified in 2 general groups: those presenting at an early age with particularly severe infections and those with less severe disease in which production of immunoglobulin is sustained at low-to-normal levels well into the first decade of life. In the latter cases, an oncogenetic change may occur in which the defective tyrosine kinase no longer can sustain the B-cell population, and a progressive reduction in immunoglobulin production occurs. Ohta et al. (1994) described the arg525-to-gln mutation (300300.0001) in patients whose disorder might have been classified as common variable immunodeficiency disease. These patients had low levels of circulating B cells at an early age with mildly decreased IgM and variable IgG levels, although all were IgA deficient.

Kornfeld et al. (1995) described the case of a 16-year-old boy who had recurrent upper respiratory tract infections at 13 months of age and was diagnosed as having transient hypogammaglobulinemia of infancy on the basis of low immunoglobulin levels, normal diphtheria and tetanus antibody responses, normal anterior and posterior cervical nodes, normal tonsillar tissue, and normal numbers of B cells in the blood. IgA levels returned to normal at 15 months of age and remained within normal limits over the next 12 months, and IgG and IgM levels remained relatively unchanged. At age 10, he began receiving intravenous gammaglobulin, which resulted in cessation of infections. The clinical picture was thought to be that of common variable immunodeficiency disease. However, gene studies revealed the deletion of exon 16 of the BTK gene resulting from a splice junction defect. The patient represents an example of the extreme variation that can occur in the XLA phenotype.

Hagemann et al. (1995) described 6 mutations in the BTK gene as the cause of XLA; 5 were novel. The mutations included 2 nonsense and 2 missense mutations, a single base deletion at an intron acceptor splice site, and a 16-bp insertion.

Kobayashi et al. (1996) reported abnormalities in the BTK gene in 12 unrelated Japanese families with X-linked agammaglobulinemia. Gene rearrangement in the kinase domain was found in 2 patients by Southern blotting. Seven point mutations, 2 small deletions, and 1 small insertion were detected by SSCP analysis and sequencing. Phenotypic heterogeneity was observed in affected family members with the same mutation. The authors concluded that analyzing BTK gene alterations with SSCP is valuable for the diagnosis of XLA patients and for carrier detection; however, the correlation between gene abnormalities and clinical features remains unclear.

Among 26 unrelated patients with XLA, Vorechovsky et al. (1997) found 24 different mutations of the BTK gene. Most resulted in the premature termination of translation. Mutations were detected in most BTK exons with a predominance of frameshift and nonsense mutations in the 5-prime end of the gene and missense mutations in its 3-prime part, corresponding to the catalytic domain of the enzyme.

Conley et al. (1998) analyzed 101 families in which affected males were diagnosed as having XLA. Mutations in the BTK gene were identified in 38 of 40 families with more than 1 affected family member and in 56 of 61 families with sporadic disease. Excluding the patients in whom the marked decrease in B cell numbers characteristic of XLA could not be confirmed by immunofluorescence studies, mutations in BTK were identified in 43 of 46 patients with presumed sporadic XLA. Two of the 3 remaining patients had defects in other genes required for normal B cell development, namely the mu heavy chain gene (IGHM1; 147020), as reported by Yel et al. (1996) or the lambda-5/14.1 surrogate light chain gene (IGLL1; 146770), as reported by Minegishi et al. (1998). Both of these patients were compound heterozygotes and there were no clinical features that would distinguish them from patients with typical XLA. An Epstein-Barr virus-transformed cell line from a third patient had normal BTK cDNA by SSCP, normal BTK message by Northern blot, and normal BTK protein by Western blot. Therefore, it is unlikely that this patient had XLA. Ten mutations were found in more than one family; 1 of these occurred in 3 families. Of the 83 unique mutations included in the study of Conley et al. (1998), 43 had been described previously by their laboratory, 5 had been reported by other groups, and 35 had not been previously described.

In a study of 12 Korean patients with X-linked agammaglobulinemia, Jo et al. (2001) identified 7 mutations in the BTK gene, including a point mutation in intron 1 (300300.0055). Luciferase analysis showed reduced transcriptional activity in the intron-1 mutant compared with the wildtype. EMSA and functional analysis indicated that a nuclear protein had the ability to bind to the intron-1 mutant oligonucleotides. Jo et al. (2001) proposed that several regulatory elements mediate the transcriptional regulation of BTK and that the first intron is important in BTK promoter activity.

Sakamoto et al. (2001) suggested maternal germinal mosaicism to explain the finding of 2 sibs with XLA who had a single base deletion (563C) in exon 6 of the BTK gene and whose mother had no evidence of the mutation. Cytoplasmic expression of BTK protein in monocytes was not detected in either patient; normal cytoplasmic expression of BTK protein was found in monocytes of the mother.

Martin et al. (2001) identified a 2-bp deletion in the BTK gene (300300.0054) in a patient with X-linked agammaglobulinemia who developed classic type I diabetes (see 222100) at the age of 14 years. Autoantibodies associated with type I diabetes were undetectable, a result consistent with the diagnosis of X-linked agammaglobulinemia. The patient's HLA type was the one that is associated with the highest genetic risk of type I diabetes. The data implied that autoantibodies are not required for either the initiation or the progression of type I diabetes. Martin et al. (2001) concluded that type I diabetes can develop in the absence of both autoantibodies and B cells. This aspect of its pathogenesis places type I diabetes in marked contrast to spontaneous autoimmune diabetes in NOD mice, which has been claimed to be B cell-dependent. The findings suggested that immunotherapy directed specifically toward B cells or autoantibodies may not be effective in preventing the destruction of beta cells.

Wattanasirichaigoon et al. (2006) reported 7 different mutations in the BTK gene among 7 patients with XLA; 4 of the mutations were novel. Six patients were Thai, and 1 patient was Burmese.

About 60% of DCLRE1C (605988) and IGHM (147020) gene defects involve gross deletions, compared with about 6% of BTK gene defects. Van Zelm et al. (2008) compared gross deletion breakpoints involving DCLRE1C, IGHM, and BTK to identify mechanisms underlying these differences in gross deletion frequencies. Their analysis suggested that gross deletions involve transposable elements or large homologous regions rather than recombination motifs. Van Zelm et al. (2008) hypothesized that the transposable element content of a gene is related to its gross deletion frequency.

Isolated Growth Hormone Deficiency III with Agammaglobulinemia

Duriez et al. (1994) found an exon-skipping mutation (300300.0004) in the BTK gene in a sporadic case of X-linked agammaglobulinemia and isolated growth hormone deficiency (IGHD3; 307200).

In 2 patients with growth hormone deficiency and agammaglobulinemia (patients 14 and 19), previously reported by Conley et al. (1991), Conley et al. (1994) identified mutations in the BTK gene, Y375X (300300.0030) and L542P (300300.0040), respectively.

BTK Mutation Database

Vihinen et al. (1996) described a database of BTK mutations (BTKbase) listing entries from 189 unrelated families showing 148 unique molecular events. Information was included regarding the phenotype. Mutations in all 5 domains of BTK had been observed to cause XLA, the most common class of changes being missense mutations. The mutations appeared almost uniformly throughout the molecule and frequently affected CpG sites forming arginine residues. Vihinen et al. (1999) reported that BTKbase listed 544 mutation entries from 471 unrelated families showing 341 unique molecular events. In addition to mutations, a number of variants or polymorphisms had been found. Most mutations led to truncation of the enzyme, and about one-third of point mutations affected CpG sites.


Animal Model

Presumably the X-linked B-lymphocyte defect of mice, studied by Marshall-Clarke et al. (1979), is homologous. This defect is characteristic of the CBA-N strain of mice (Scher et al., 1975). Defective mice lack the subpopulation of B lymphocytes responsive to certain T-independent antigens of which trinitrophenylated (TNP)-Ficoll is the prototype. Their responses to T-dependent antigens may also be impaired and they are unable to respond to the hapten phosphorylcholine (PC). They lack those B cells that form colonies when cultured in vitro.

Cohen et al. (1985) isolated a cDNA probe recognizing a family of genes, called XLR, on the mouse X chromosome, at least some members of which are closely linked to the X-linked immunodeficiency (xid) trait.

Linkage studies involving 1,114 progeny backcross revealed colocalization of the xid mutation in mice with the Btk gene (Thomas et al., 1993). The xid mutation was associated in mice with a missense mutation that altered the highly conserved arginine near the N terminus of the Btk protein. Because this region of the protein lies outside any obvious kinase domain, the xid mutation may define another aspect of tyrosine kinase. Rawlings et al. (1993) likewise mapped the xid and the Btk gene to the same region and demonstrated the same missense mutation, an arg28-to-cys change.

Drabek et al. (1997) generated transgenic mice in which expression of the human BTK gene was driven by the murine class II major histocompatibility complex Ea gene locus control region, which provides gene expression from the pre-B cell stage onwards. When these transgenic mice were mated onto a Btk(-) background, correction of the xid B cell defects was observed: B cells differentiated to mature low IgM/high IgD stages, peritoneal CD5(+) B cells were present, and serum immunoglobulin levels and in vivo responses to antigens were in the normal ranges. A comparable rescue by transgenic Btk expression was also observed in heterozygous Btk +/- female mice in those B-lineage cells that were Btk-deficient as a result of X-chromosome inactivation.

Kawakami et al. (2006) found that dendritic cells of Btk-null mice exhibited a more mature phenotype and a stronger in vitro and in vivo T cell-stimulatory ability than wildtype cells. Increased IgE responses were induced by adoptive transfer of Btk-null dendritic cells into wildtype mice. Consistent with the stronger T cell-stimulatory ability of Btk-null dendritic cells, Btk-null mice exhibited enhanced inflammation in T helper cell 2-driven asthma and T helper cell 1-driven contact sensitivity experiments. The negative regulatory functions of Btk in dendritic cells appeared to be mediated mainly through autocrine secretion of IL10 (124092) and subsequent activation of Stat3 (102582).

Using Tec (600583) -/- Btk -/- double-knockout mice, Shinohara et al. (2008) showed that these tyrosine kinases were crucial in Rankl (TNFSF11; 602642)-induced osteoclastogenesis. In response to Rankl stimulation, Btk and Tec formed a signaling complex required for osteoclastogenesis with adaptor molecules such as Blnk (604515), which also recruited Syk (600085), linking Rank (TNFRSF11A; 603499) and ITAM (see 608740) signals to phosphorylate Plc-gamma (see 172420). Tec kinase inhibition reduced osteoclastic bone resorption in models of osteoporosis and inflammation-induced bone destruction. Shinohara et al. (2008) concluded that their studies provided a link between immunodeficiency and abnormal bone homeostasis owing to defects in signaling molecules shared by B cells and osteoclasts.

Mao et al. (2020) found that Btk -/- mice were more susceptible to experimental colitis than wildtype mice. Increased colitis in Btk -/- mice was largely due to excess Il1-beta (IL1B; 147720) secretion arising from increased Nlpr3 inflammasome activity. Consequently, blockade of Il1-beta ameliorated increased colitis in Btk -/- mice. Treatment of wildtype mice with a Btk inhibitor revealed that, similar to in vitro studies, Btk inhibition regulated Nlrp3 inflammasome activation in vivo in a dose-dependent manner. Mice treated with low-dose inhibitor phenocopied Btk -/- mice and exhibited increased susceptibility to experimental colitis, whereas mice treated with high-dose inhibitor exhibited the opposite effects.


ALLELIC VARIANTS 56 Selected Examples):

.0001   AGAMMAGLOBULINEMIA, X-LINKED

BTK, ARG525GLN
SNP: rs128620183, ClinVar: RCV000012095, RCV000581245, RCV001204367, RCV001267912

In a patient with X-linked agammaglobulinemia (XLA; 300755), Vetrie et al. (1993) identified a G-to-A transition at nucleotide 1706 in the BTK gene, resulting in a change of arginine-525 to glutamine. This conserved amino acid substitution was predicted to have a highly detrimental effect on the catalytic function of the putative protein-tyrosine kinase. Loss of the conserved arg525 could prevent substrate recognition because this residue is thought to be important in the substrate-specific domain. Ohta et al. (1994) also described the arg525-to-gln mutation in a family in which the diagnosis of common variable immunodeficiency disease had been made.


.0002   AGAMMAGLOBULINEMIA, X-LINKED

BTK, LYS430GLU
SNP: rs128620184, ClinVar: RCV000012096

In a patient with X-linked agammaglobulinemia (XLA; 300755), Vetrie et al. (1993) identified an A-to-G transition at position 1420 in the BTK gene, resulting in a substitution of glutamic acid for lysine-430. Substitution of lys430 (equivalent to lys295 of v-src) within the ATP-binding site would completely abolish kinase activity.


.0003   AGAMMAGLOBULINEMIA, X-LINKED

BTK, TYR361CYS
SNP: rs28935478, ClinVar: RCV000012099, RCV003511975

Like most other cytoplasmic tyrosine kinases, the Bruton tyrosine kinase contains a unique amino terminal region, SH3 and SH2 domains (short for SRC homology 3 and 2, respectively), and a carboxy-terminal kinase domain. In a patient with atypical X-linked agammaglobulinemia (XLA; 300755), Saffran et al. (1994) found a point mutation in the SH2 domain of BTK in a B-cell line. SH2 domains are critical mediators of binding with phosphotyrosine-containing proteins in the cell. The mutation was located in what crystal-structure studies of the SRC SH2 domain predict is a critical hydrophobic binding pocket. The consequence of this mutation is predicted to be decreased stability of the BTK protein, possibly resulting from the inability of BTK to interact with important substrates. The patient was a 23-year-old man who was the oldest of 3 brothers previously described as having atypical X-linked agammaglobulinemia by Conley and Puck (1988). A diagnosis of hypogammaglobulinemia was made when the proband was 6 years old and his brothers were 5 and 2 years old. Without therapy, the patient's serum IgG concentration was 590 mg per deciliter. All 3 brothers had 0.3 to 2% B cells in the peripheral circulation, whereas patients with typical Bruton agammaglobulinemia have a mean of 0.1% and normal subjects have 5 to 15% B cells. Although the patient complied poorly with therapy, he had not had serious infections. The single point mutation found in the SH2 domain of the coding sequence changed amino acid residue 361 from tyrosine to cysteine as a result of a TAC-to-TGC transition. Buckley (1994), who provided a diagram of the structure of the BTK protein, suggested that some of the other less severe antibody-deficiency syndromes in humans could be caused by mutations in the non-kinase portions of the BTK gene. In addition, she pointed with interest to the fact that BTK is also expressed in cells of the myeloid lineage and that it is well known that intermittent neutropenia occurs in boys with X-linked agammaglobulinemia, particularly at the height of an acute infection (Buckley and Rowlands, 1973). She raised the possibility that BTK is only one of the signaling molecules in myeloid maturation and that neutropenia may develop in X-linked agammaglobulinemia only when white cell production is rapid.

In a patient with mild X-linked agammaglobulinemia, Conley et al. (1994) identified an A-to-G transition in exon 12, resulting in a substitution of cysteine for tyrosine-361.


.0004   ISOLATED GROWTH HORMONE DEFICIENCY, TYPE III, WITH AGAMMAGLOBULINEMIA

BTK, IVS17DS, G-A, +5
SNP: rs864321659, ClinVar: RCV000012100

In a sporadic case of the syndrome of X-linked agammaglobulinemia and isolated growth hormone deficiency (IGHD3; 307200), Duriez et al. (1994) analyzed the BTK gene by RT-PCR, sequencing of cDNA and genomic DNA, and in vitro splicing assays to demonstrate an intronic point mutation, 1882+5G-A, located in the tyrosine kinase domain. This exon-skipping event resulted in a frameshift leading to a premature stop codon 14 amino acids downstream and in the loss of the last 61 residues of the carboxy-terminal end of the protein. The possibility that a mutant form of BTK may give rise to XLA alone in most cases but that some mutant forms can generate both XLA and IGHD suggests that the BTK gene is expressed in the pituitary gland. To test this hypothesis, Duriez et al. (1994) carried out 30 cycles of RT-PCR on mRNA from pituitaries, and the product was sequenced. This led to the detection of a specific BTK amplification product of expected size and sequence. The finding tempted Duriez et al. (1994) to speculate that the protein tyrosine kinase encoded by the BTK gene plays a role in the biosynthesis or secretion of growth hormone and that some mutant forms of the BTK protein can impair both the production of growth hormone and the development of B lineage cells. They stated that 'characterisation of additional BTK gene mutations in the rare patients inheriting both XLA and IGHD is eagerly awaited.'


.0005   AGAMMAGLOBULINEMIA, X-LINKED

BTK, ARG28HIS
SNP: rs128620185, ClinVar: RCV000012101, RCV000427660, RCV000583846, RCV000819061

Ohta et al. (1994) described cases of X-linked agammaglobulinemia (XLA; 300755) with a G-to-A transition at nucleotide 215 of the BTK gene, resulting in an arg28-to-his (R28H) amino acid replacement. The same amino acid change occurs as the cause of xid in the mouse but the mutation is a C-to-T transition at nucleotide 214. The arg28-to-his mutation was described in a case of XLA by de Weers et al. (1994).

Wood et al. (2001) found the R28H mutation in a 25-year-old man with a selective antipolysaccharide antibody deficiency whose IgG levels had fallen slightly below the normal range since the age of 23 years but who had remained well on antibiotic prophylaxis for 12 years. The authors suggested that male patients with antipolysaccharide antibody deficiency should be evaluated for B-cell lymphopenia and BTK mutations.


.0006   AGAMMAGLOBULINEMIA, X-LINKED

BTK, MET1THR
SNP: rs128620186, ClinVar: RCV000012102, RCV003511976

Bykowsky et al. (1996) described 2 brothers with a T-to-C transition at nucleotide 134 of the BTK gene that resulted in a change of the translation initiation ATG (met) to ACG (thr). The brothers had different clinical and laboratory phenotypes. The proband lacked immunoglobulins and B cells and had recurrent infections, whereas his older affected brother had normal levels of IgG and IgM and very few infections. Both had undetectable levels of BTK kinase activity in circulating mononuclear cells. Complete sequencing of the BTK gene transcripts in both brothers revealed no additional mutations to account for the discordant phenotypes.


.0007   HYPOGAMMAGLOBULINEMIA, X-LINKED

BTK, ALA-ASP, 1952C-A
ClinVar: RCV000012103

Jones et al. (1996) described 3 brothers affected by immunodeficiency characterized by low B cell numbers and hypogammaglobulinemia (XLA; 300755), but normal T cell numbers and function. One brother presented at the age of 2 years with pneumococcal pneumonia and empyema requiring thoracotomy. He had a history of recurrent chest infections and severe otitis media. He developed pneumococcal meningitis at 5 years, at which time the diagnosis of hypogammaglobulinemia was first made. The second brother presented at the age of 2 years with a cervical abscess, followed several months later by an episode of pneumococcal meningitis. At 3 years he developed pneumococcal pericarditis requiring pericardiectomy. This occurred concurrently with his elder brother's pneumococcal meningitis, and as a result both boys were investigated and found to have hypogammaglobulinemia. Both boys received routine immunizations as well as Pneumovax. The third brother was identified by screening at the age of 8 weeks because of immunodeficiency in the older brothers. None of the brothers had received regular immunoglobulin replacement treatment. Analysis of cDNA prepared from the 3 affected brothers identified a single nucleotide alteration (C-to-A) at nucleotide 1952 (1952C-A) of the BTK gene. This resulted in a nonpolar-to-polar amino acid substitution (alanine to aspartic acid) in the kinase domain near the C-terminal end of the BTK protein.


.0008   AGAMMAGLOBULINEMIA, X-LINKED

BTK, ARG13TER
SNP: rs128620187, ClinVar: RCV000012097

In 2 patients with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a C-to-T transition at a CpG dinucleotide in exon 2 of the BTK gene, resulting in a stop codon at position 13 and a truncated protein.


.0009   AGAMMAGLOBULINEMIA, X-LINKED

BTK, GLN15TER
SNP: rs128620188, ClinVar: RCV000012098, RCV001027550, RCV002512977

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a C-to-T transition at a CpG dinucleotide in exon 2 of the BTK gene, resulting in a stop codon at position 15 and a truncated protein.


.0010   AGAMMAGLOBULINEMIA, X-LINKED

BTK, THR33PRO
SNP: rs128620189, ClinVar: RCV000012104

In 2 patients with severe X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) identified an A-to-C transversion at position 229 of the BTK gene, resulting in a substitution of proline for threonine-33 in the pleckstrin homology domain.


.0011   AGAMMAGLOBULINEMIA, X-LINKED

BTK, 4-BP DEL, CODON 76, GAAA
SNP: rs864321660, ClinVar: RCV000012105

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a 4-bp (GAAA) deletion at codons 76 and 77 in exon 3 of the BTK gene, resulting in a frameshift and a premature stop codon at position 120.


.0012   AGAMMAGLOBULINEMIA, X-LINKED

BTK, 2-BP DEL, IVS2DS, +3AA
SNP: rs864321661, ClinVar: RCV000012106

In a patient with X-linked agammaglobulinemia (XLA; 300755), Hagemann et al. (1994) identified a 2-bp deletion at the 5-prime end of intron 2 of the BTK gene. Two adenines were deleted from positions +3 and +4 of the consensus sequence GTAAGT at the donor splice site. Although the deletion does not break the GT/AG boundary rule, the resulting donor splice site does not match the consensus sequence, and the mutation would most likely result in exon 2 skipping. This would remove the 5-prime end of the coding sequence, including the translation start site and the PH domain.


.0013   AGAMMAGLOBULINEMIA, X-LINKED

BTK, IVS4AS, G-C, -1
SNP: rs864321662, ClinVar: RCV000012107, RCV003511977

In a patient with X-linked agammaglobulinemia (XLA; 300755), Hagemann et al. (1994) identified a G-to-C transversion at the first nucleotide of the acceptor splice site of intron 4 in the BTK gene, which breaks the GT/AG exon-intron boundary rule. The skipping of exon 5 would cause a frameshift.


.0014   AGAMMAGLOBULINEMIA, X-LINKED

BTK, 21-BP INS, NT442
SNP: rs864321663, ClinVar: RCV000012108

In a patient with X-linked agammaglobulinemia (XLA; 300755), Bradley et al. (1994) identified a 21-bp insertion at position 442 in the 5-prime terminal region of the BTK gene, resulting in an in-frame insertion of 7 amino acids (ser-val-phe-ser-ser-thr-arg) between amino acids 103 and 104 in the protein. Hagemann et al. (1994) found that the inserted sequence matched the 3-prime acceptor sequence of intron 4 except for an A-to-G transition at position -2 from the 3-prime end. This base substitution breaks the GT/AG boundary rule. An alternative splice site 22-bp upstream of the normal 3-prime intron boundary matches the AG acceptor consensus sequence and would explain the 21-bp inserted sequence from the patient's cDNA.


.0015   AGAMMAGLOBULINEMIA, X-LINKED

BTK, VAL113ASP
SNP: rs128621190, ClinVar: RCV000012109

In a patient with severe X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a T-to-A transversion in exon 5 of the BTK gene, resulting in a substitution of aspartic acid for valine-113 in the pleckstrin homology domain. This patient was below the fifth percentile in height, but when evaluated for growth hormone deficiency, was found to have normal growth hormone production. It is possible that other genetic or environmental factors, in concert with absent or defective Btk, cause growth hormone deficiency.


.0016   AGAMMAGLOBULINEMIA, X-LINKED

BTK, 1-BP DEL, CODON 130, A
SNP: rs864321664, ClinVar: RCV000012110

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a 1-bp (A) deletion at codon 130 in exon 5 of the BTK gene, resulting in a frameshift.


.0017   AGAMMAGLOBULINEMIA, X-LINKED

BTK, 1-BP INS, CODON 186, A
SNP: rs864321665, ClinVar: RCV000012111, RCV000691136

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a 1-bp (A) insertion at codon 186 in exon 7 of the BTK gene, resulting in a frameshift.


.0018   AGAMMAGLOBULINEMIA, X-LINKED

BTK, 8-BP INS, NT721
SNP: rs1569293253, ClinVar: RCV000012112

In a patient with X-linked agammaglobulinemia (XLA; 300755), de Weers et al. (1994) identified an 8-bp (CTACATAG) insertion at position A721 in the N-terminal region of the BTK gene, resulting in a frameshift and a truncated protein.


.0019   AGAMMAGLOBULINEMIA, X-LINKED

BTK, 1-BP DEL, CODON 218, A
SNP: rs1569292813, ClinVar: RCV000012113

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a 1-bp (A) deletion at codon 218 in exon 8 of the BTK gene, resulting in a frameshift.


.0020   AGAMMAGLOBULINEMIA, X-LINKED

BTK, GLU240TER
SNP: rs128621191, ClinVar: RCV000012114

In a patient with severe X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) identified a G-to-T transversion in the BTK gene, resulting in a stop codon at position 240 and a truncated protein. This mutation was found in the SH3 domain.


.0021   AGAMMAGLOBULINEMIA, X-LINKED

BTK, TRP252TER
SNP: rs128621192, ClinVar: RCV000012115, RCV003511978

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a G-to-A transition in exon 8 of the BTK gene, resulting in a stop codon at position 252 and a truncated protein. This mutation was found in the SH3 domain.


.0022   AGAMMAGLOBULINEMIA, X-LINKED

BTK, ARG255TER
SNP: rs128621193, ClinVar: RCV000012116, RCV000583310, RCV001221640, RCV001269823

In a patient with X-linked agammaglobulinemia (XLA; 300755), Bradley et al. (1994) identified a C-to-T transition at position 895 of the BTK gene, resulting in a stop codon at position 255 and a severely truncated protein lacking the remaining 404 amino acids, which include the SH2 and kinase domains. This patient and his brother have no detectable B-cells, confirming that the absence of the functional domains of Btk results in a classic XLA phenotype.


.0023   AGAMMAGLOBULINEMIA, X-LINKED

BTK, IVS9DS, G-A, +1
SNP: rs1569292649, ClinVar: RCV000012117

In 2 patients with severe X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) identified a G-to-A transition at nucleotide 909 of the BTK gene, which is the first nucleotide of the donor splice site of intron 9. The mutation causes a deletion of 21 amino acids between residues gln260 and glu280 due to skipping of exon 9. This mutation was found in the SH3 domain.


.0024   AGAMMAGLOBULINEMIA, X-LINKED

BTK, 1-BP DEL/3-BP INS, CODON 261
ClinVar: RCV000012118

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a 1-bp (G) deletion associated with a 3-bp (TTA) insertion at codon 261 in exon 9 of the BTK gene, resulting in a frameshift. This mutation was found in the SH3 domain.


.0025   AGAMMAGLOBULINEMIA, X-LINKED

BTK, ARG288TRP
SNP: rs128621194, ClinVar: RCV000012119, RCV000768159, RCV001384086, RCV001701564

In a patient with severe X-linked agammaglobulinemia (XLA; 300755), de Weers et al. (1994) identified a C-to-T transition at position 993 of the BTK gene, resulting in a substitution of tryptophan for arginine-288. This mutation was found in the SH2-like domain where arg288 is highly conserved and crucial for the interaction with the aromatic ring of phosphotyrosine. Therefore, the replacement of arg288 by a nonpolar tryptophan would entirely abrogate the formation of the high-affinity complex with phosphotyrosine.


.0026   AGAMMAGLOBULINEMIA, X-LINKED

BTK, ARG307GLY
SNP: rs128621195, ClinVar: RCV000012120

In a patient with severe X-linked agammaglobulinemia (XLA; 300755), Bradley et al. (1994) identified an A-to-G transition at position 1051 of the BTK gene, resulting in a substitution of glycine for arginine-307. This mutation was found in the SH2-like domain where arg307 is involved in the binding interactions at the base of the phosphotyrosine binding pocket. The change to a neutral glycine residue is highly likely to disrupt the binding potential of this region. This patient has less than 1% B cells and undetectable immunoglobulin levels, indicating that the replacement of this highly conserved arginine residue completely abolishes the functioning of Btk.


.0027   AGAMMAGLOBULINEMIA, X-LINKED

BTK, TYR334SER
SNP: rs128621196, ClinVar: RCV000012121

In a patient with X-linked agammaglobulinemia (XLA; 300755), Hagemann et al. (1994) identified an A-to-C transversion at position 1133 in exon 12 of the BTK gene, resulting in a substitution of serine for tyrosine-334. This mutation was found in the SH2-like domain where tyr334 is most likely responsible for the substrate recognition.


.0028   AGAMMAGLOBULINEMIA, X-LINKED

BTK, 1-BP DEL, IVS11DS, +1G
SNP: rs2147430166, ClinVar: RCV000012122

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a 1-bp (G) deletion that occurred in a run of 3 Gs in the last codon (325) of exon 11 and the first nucleotide of intron 11 in the BTK gene. This mutation was found in the SH2 domain.


.0029   AGAMMAGLOBULINEMIA, X-LINKED

BTK, IVS12AS, A-T, -2
SNP: rs1603005659, ClinVar: RCV001001214, RCV001869427, RCV002549158

In 3 patients with moderate to severe X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) identified an A-to-T transversion at nucleotide 1235, which is the second nucleotide of the acceptor splice site of intron 12, in the BTK gene. The mutation causes a deletion of 12-bp between residues 1235-1247, a frameshift at codon 372, and a stop codon at position 398. This mutation was found in the SH2 domain.


.0030   ISOLATED GROWTH HORMONE DEFICIENCY, TYPE III, WITH AGAMMAGLOBULINEMIA

BTK, TYR375TER
SNP: rs128621197, ClinVar: RCV000012124

In a boy (patient 14) with X-linked agammaglobulinemia and isolated growth hormone deficiency (IGHD3; 307200), Conley et al. (1994) identified a T-to-G transversion in exon 13 of the BTK gene, resulting in a tyr375-to-ter (Y375X) substitution in the SH2 domain. The mutation was associated with an absence of Btk transcript. The boy did not experience major infections and responded well to growth hormone treatment.


.0031   AGAMMAGLOBULINEMIA, X-LINKED

BTK, 16-BP INS, NT1263
SNP: rs2147429013, ClinVar: RCV000012125

In 4 patients with moderate X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) identified a 16-bp insertion (duplication) at position 1263 of the BTK cDNA, resulting in a frameshift and a premature stop codon in position 404. This mutation was found in the SH2 domain.


.0032   AGAMMAGLOBULINEMIA, X-LINKED

BTK, LEU408PRO
SNP: rs128621198, ClinVar: RCV000012126

In 2 patients with moderate X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) identified a T-to-C transition at position 1355 in the BTK gene, resulting in a substitution of proline for leucine-408. This mutation was found in the SH1 domain.


.0033   AGAMMAGLOBULINEMIA, X-LINKED

BTK, TYR425TER
SNP: rs128621199, gnomAD: rs128621199, ClinVar: RCV000012127

In a patient with severe X-linked agammaglobulinemia (XLA; 300755), de Weers et al. (1994) identified a C-to-A transversion at position 1407 in the BTK gene, resulting in a stop codon at position 425 and a truncated protein. This mutation was found in the ATP-binding site.


.0034   AGAMMAGLOBULINEMIA, X-LINKED

BTK, CYS502TER
SNP: rs41310709, ClinVar: RCV000012128

In a patient with severe X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) identified a C-to-A transversion at position 1638 of the BTK gene, resulting in a stop codon at position 502 and a truncated protein. This mutation was found in the SH1 domain.


.0035   AGAMMAGLOBULINEMIA, X-LINKED

BTK, CYS506ARG
SNP: rs128621200, ClinVar: RCV000012129, RCV001035091

In a patient with X-linked agammaglobulinemia (XLA; 300755), Hagemann et al. (1994) identified a T-to-C transition at position 1648 in exon 15 of the BTK gene, resulting in a substitution of arginine for cysteine-506 in the middle of the kinase domain. Whether this residue is directly involved in catalytic activity or substrate recognition is not clear.


.0036   AGAMMAGLOBULINEMIA, X-LINKED

BTK, ARG520TER
SNP: rs128621201, ClinVar: RCV000012130, RCV000378493, RCV000582314, RCV001061773

In 2 patients with moderate to severe X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) and Hagemann et al. (1994) identified a C-to-T transition at position 1690 of the BTK gene, resulting in a stop codon at position 520 (in the middle of the kinase domain) and a truncated protein.


.0037   AGAMMAGLOBULINEMIA, X-LINKED

BTK, ARG520GLN
SNP: rs128621202, ClinVar: RCV000012131, RCV000637056, RCV002482855

In patients with severe X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) and Hagemann et al. (1994) identified a G-to-A transition at position 1691 in the BTK gene, resulting in a substitution of glutamine for arginine-520. Arg-520 is a highly conserved residue among all protein kinases. This mutation was found in the SH1 domain.


.0038   AGAMMAGLOBULINEMIA, X-LINKED

BTK, 1-BP DEL, 1720A
SNP: rs2147425836, ClinVar: RCV000012132

In a patient with X-linked agammaglobulinemia (XLA; 300755), Hagemann et al. (1994) identified a 1-bp deletion (A1720) at codon 530 in exon 16, which is in the substrate specific portion of the SH1 domain in the BTK gene. This deletion results in a frameshift that generates a stop codon at nucleotide position 1796-1798 and eliminates the C-terminal portion of the catalytic domain.


.0039   AGAMMAGLOBULINEMIA, X-LINKED

BTK, 4-BP DEL, CODON 527, GTTT
SNP: rs1555977592, ClinVar: RCV000582912, RCV000637053, RCV001008113, RCV002266990

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a 4-bp (GTTT) deletion at codons 527 and 528 in exon 16 of the BTK gene, resulting in a frameshift. The patient was the mother of a boy who died suddenly of bacterial sepsis at 11 months of age. The absence of germinal follicles in lymph nodes at autopsy examination of this child suggested the diagnosis of XLA despite the lack of family history of immunodeficiency. The mother was shown to be a carrier of XLA. Analysis of X-chromosome inactivation patterns and DNA demonstrated a pattern consistent with one normal allele and one abnormal allele on SSCP analysis of exon 16. This mutation was found in the kinase domain.


.0040   ISOLATED GROWTH HORMONE DEFICIENCY, TYPE III, WITH AGAMMAGLOBULINEMIA

BTK, LEU542PRO
SNP: rs128621203, ClinVar: RCV000012134, RCV001810852

In a boy (patient 19) with X-linked agammaglobulinemia and isolated growth hormone deficiency (IGHD3; 307200), Conley et al. (1994) identified a T-to-C transition in exon 16 of the BTK gene, resulting in a leu542-to-pro (L542P) substitution in the kinase domain. The patient had not experienced major infections and responded well to growth hormone replacement.


.0041   AGAMMAGLOBULINEMIA, X-LINKED

BTK, IVS16DS, G-T, +1
SNP: rs1569291215, ClinVar: RCV000012135

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a G-to-T transversion at codon 544, which is the first nucleotide of the donor splice site of intron 16 in the BTK gene. The mutation preserved a potential splice donor site and the GT sequence was moved 5-prime by 1 basepair. Use of this splice site would result in a frameshift and a premature stop codon. This mutation was found in the kinase domain.


.0042   AGAMMAGLOBULINEMIA, X-LINKED

BTK, ARG562TRP
SNP: rs128621204, ClinVar: RCV000012136, RCV000581337, RCV000816209

In a patient with mild X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) and Hagemann et al. (1994) identified a C-to-T transition in exon 17 of the BTK gene, resulting in a substitution of tryptophan for arginine-562. This mutation was found in the kinase domain. Whether this residue is directly involved in catalytic activity or substrate recognition is not clear.


.0043   AGAMMAGLOBULINEMIA, X-LINKED

BTK, TYR581ARG
SNP: rs128621205, ClinVar: RCV000012137

In a patient with mild X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a T-to-C transition in exon 17 of the BTK gene, resulting in a substitution of arginine for tyrosine-581. The wildtype tryptophan at this site is conserved in most serine/threonine kinases as well as in most tyrosine kinases. This mutation was found in the kinase domain.


.0044   AGAMMAGLOBULINEMIA, X-LINKED

BTK, GLU589GLY
SNP: rs128621206, ClinVar: RCV000012138

In 3 patients with moderate X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) identified an A-to-G transition at position 1898 in the BTK gene, resulting in a substitution of glycine for glutamic acid-589. This mutation was found in the SH1 domain.


.0045   AGAMMAGLOBULINEMIA, X-LINKED

BTK, TYR591TER
SNP: rs128621207, ClinVar: RCV000012139, RCV003511979

In a patient with X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a C-to-A transversion in exon 17 of the BTK gene, resulting in a stop codon at position 591 and a truncated protein. This mutation was found in the kinase domain.


.0046   AGAMMAGLOBULINEMIA, X-LINKED

BTK, ALA607ASP
SNP: rs128621208, ClinVar: RCV000012140

In 2 patients with mild X-linked agammaglobulinemia (XLA; 300755), Bradley et al. (1994) identified a C-to-A transition at position 1952 of the BTK gene, resulting in a substitution of aspartic acid for alanine-607 near the 3-prime end of the gene.


.0047   AGAMMAGLOBULINEMIA, X-LINKED

BTK, GLY613ASP
SNP: rs128621209, ClinVar: RCV000012141

In 2 patients with mild X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) identified a G-to-A transition at position 1970 of the BTK gene, resulting in a substitution of aspartic acid for glycine-613. This mutation was found in the SH1 domain.


.0048   AGAMMAGLOBULINEMIA, X-LINKED

BTK, MET630LYS
SNP: rs128621210, ClinVar: RCV000012142

In a patient with mild X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) and Hagemann et al. (1994) identified a T-to-A transversion in exon 18 of the BTK gene, resulting in a substitution of lysine for methionine-630. This mutation was found in the kinase domain. Whether this residue is directly involved in catalytic activity or substrate recognition is not clear.


.0049   AGAMMAGLOBULINEMIA, X-LINKED

BTK, GLU636TER
SNP: rs128622211, ClinVar: RCV000012143

In a patient with X-linked agammaglobulinemia (XLA; 300755), Bradley et al. (1994) identified a G-to-T transversion at nucleotide 2038 of the BTK gene, resulting in a stop codon at position 636 and a loss of the 24 terminal amino acids from the protein, including several highly conserved residues. As there are 3 affected boys in this family who have no detectable B-cells or immunoglobulin, it is likely that the last 24 amino acids of this protein are critical for its correct expression and/or function in B-cell development.


.0050   AGAMMAGLOBULINEMIA, X-LINKED

BTK, 6-BP INS, NT2041
SNP: rs2147423959, ClinVar: RCV000012144

In a patient with X-linked agammaglobulinemia (XLA; 300755), de Weers et al. (1994) identified a 6-bp (TTTTAG) insertion at position A2041 in the C-terminal region of the BTK gene, resulting in a frameshift and a truncated protein.


.0051   AGAMMAGLOBULINEMIA, X-LINKED

BTK, LEU652PRO
SNP: rs128622212, ClinVar: RCV000012145

In a patient with mild X-linked agammaglobulinemia (XLA; 300755), Conley et al. (1994) identified a T-to-C transition in exon 19 of the BTK gene, resulting in a substitution of proline for leucine-652. This leucine defines the 3-prime border of the conserved kinase domain in many tyrosine kinases.


.0052   AGAMMAGLOBULINEMIA, X-LINKED

BTK, 26-BP INS, NT2019
ClinVar: RCV000012146

In a patient with severe X-linked agammaglobulinemia (XLA; 300755), Zhu et al. (1994) identified a 26-bp insertion (duplication) at position 2019 in the BTK gene, resulting in a frameshift and a premature stop codon in position 653. This mutation was found in the SH1 domain.


.0053   AGAMMAGLOBULINEMIA, X-LINKED

BTK, ARG562PRO
SNP: rs104894770, ClinVar: RCV000012147, RCV000485427

Curtis et al. (2000) identified a missense mutation, 1817G-C (arg562 to pro; R562P), in exon 17 of the BTK gene in cousins with X-linked agammaglobulinemia (XLA; 300755). The same mutation was present in both mothers (twin sisters) of the cousins, identifying them as carriers. However, the mutation was absent in all other relatives including the grandmother of the cousins (mother of the twin sisters). This suggested that the mutation had originated in the germline of one of the grandparents or in the zygote.


.0054   AGAMMAGLOBULINEMIA, X-LINKED

BTK, 2-BP DEL, 54TG
SNP: rs1569292818, ClinVar: RCV000012148

In a patient with X-linked agammaglobulinemia (XLA; 300755) who developed classic type I diabetes at the age of 14 years, Martin et al. (2001) identified a 2-bp deletion (TG) at nucleotides 54-55 in exon 8 of the BTK gene, resulting in a frameshift at codon 214 in the TH domain and a premature stop codon at position 223 in the SH3 domain of the BTK protein.


.0055   AGAMMAGLOBULINEMIA, X-LINKED

BTK, IVS1DS, G-A, +5
SNP: rs1131691354, ClinVar: RCV000012149

In a Korean family with X-linked agammaglobulinemia (XLA; 300755), Jo et al. (2001) identified a point mutation in intron 1 of the BTK gene, a G-to-A transition at position +5.


.0056   AGAMMAGLOBULINEMIA, X-LINKED

BTK, 6.1-KB DEL
ClinVar: RCV000012150

Jo et al. (2003) identified BTK mutations in 6 patients with presumed X-linked agammaglobulinemia (XLA; 300755) from unrelated Korean families. Of the 6 mutations, 4 were novel, including a 6.1-kb deletion including BTK exons 11-18. The large deletion, identified by long-distance PCR, revealed Alu-Alu mediated recombination that extended from an Alu sequence in intron 10 to another Alu sequence in intron 18, spanning a distance of 6.1 kb.


See Also:

Berning et al. (1980); van der Meer et al. (1986)

REFERENCES

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Contributors:
Bao Lige - updated : 04/06/2022
Carol A. Bocchini - updated : 10/29/2018
Patricia A. Hartz - updated : 2/2/2009
Paul J. Converse - updated : 11/21/2008
Cassandra L. Kniffin - updated : 10/13/2008
Patricia A. Hartz - updated : 5/2/2008
Cassandra L. Kniffin - updated : 3/21/2007
Paul J. Converse - updated : 4/11/2006
Patricia A. Hartz - updated : 3/27/2006
Victor A. McKusick - updated : 1/15/2004
Paul J. Converse - updated : 1/25/2002
Paul J. Converse - updated : 1/9/2002
Victor A. McKusick - updated : 10/30/2001
Deborah L. Stone - updated : 10/19/2001
Victor A. McKusick - updated : 3/13/2001
Victor A. McKusick - updated : 2/23/2000
Victor A. McKusick - updated : 9/23/1999
Victor A. McKusick - updated : 5/14/1999
Victor A. McKusick - updated : 5/15/1998
Victor A. McKusick - updated : 6/18/1997
Victor A. McKusick - updated : 2/12/1997
Moyra Smith - updated : 8/29/1996
Moyra Smith - updated : 3/13/1996

Creation Date:
Victor A. McKusick : 6/4/1986

Edit History:
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carol : 7/6/1996
joanna : 3/22/1996
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terry : 3/13/1996
mark : 3/13/1996
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mark : 10/24/1995
terry : 8/10/1995
davew : 8/25/1994
jason : 7/15/1994
mimadm : 5/12/1994
warfield : 3/21/1994