Entry - #610163 - IMMUNODEFICIENCY 25; IMD25 - OMIM
# 610163

IMMUNODEFICIENCY 25; IMD25


Alternative titles; symbols

IMMUNODEFICIENCY DUE TO DEFECT IN CD3-ZETA


Phenotype-Gene Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Gene/Locus Gene/Locus
MIM number
1q24.2 ?Immunodeficiency 25 610163 AR 3 CD247 186780
Clinical Synopsis
 
Phenotypic Series
 

INHERITANCE
- Autosomal recessive
IMMUNOLOGY
- Recurrent infections
- Viral infections
- Fungal infections
- Bacterial infections
- Low number of T cells
- Decreased expression of the TCR/CD3 complex
- Eosinophilia
MISCELLANEOUS
- Onset in infancy
- One patient has been reported (last curated June 2016)
MOLECULAR BASIS
- Caused by mutation in the CD247 antigen gene (CD247, 186780.0001)
Immunodeficiency (select examples) - PS300755 - 128 Entries
Location Phenotype Inheritance Phenotype
mapping key
Phenotype
MIM number
Gene/Locus Gene/Locus
MIM number
1p36.33 Immunodeficiency 38 AR 3 616126 ISG15 147571
1p36.33 ?Immunodeficiency 16 AR 3 615593 TNFRSF4 600315
1p36.23 Immunodeficiency 109 with lymphoproliferation AR 3 620282 TNFRSF9 602250
1p36.22 Immunodeficiency 14A, autosomal dominant AD 3 615513 PIK3CD 602839
1p36.22 Immunodeficiency 14B, autosomal recessive AR 3 619281 PIK3CD 602839
1p35.2 Immunodeficiency 22 AR 3 615758 LCK 153390
1p34.2 Immunodeficiency 24 AR 3 615897 CTPS1 123860
1p22.3 ?Immunodeficiency 37 AR 3 616098 BCL10 603517
1q21.3 Immunodeficiency 42 AR 3 616622 RORC 602943
1q23.3 Immunodeficiency 20 AR 3 615707 FCGR3A 146740
1q24.2 ?Immunodeficiency 25 AR 3 610163 CD247 186780
1q25.3 Immunodeficiency 133 with autoimmunity and autoinflammation AR 3 620565 ARPC5 604227
1q25.3 Immunodeficiency 70 AD 3 618969 IVNS1ABP 609209
1q31.3-q32.1 Immunodeficiency 105, severe combined AR 3 619924 PTPRC 151460
2p16.1 Immunodeficiency 92 AR 3 619652 REL 164910
2p11.2 Immunodeficiency 116 AR 3 608957 CD8A 186910
2q11.2 Immunodeficiency 48 AR 3 269840 ZAP70 176947
2q24.2 Immunodeficiency 95 AR 3 619773 IFIH1 606951
2q32.2 Immunodeficiency 31C, chronic mucocutaneous candidiasis, autosomal dominant AD 3 614162 STAT1 600555
2q32.2 Immunodeficiency 31A, mycobacteriosis, autosomal dominant AD 3 614892 STAT1 600555
2q32.2 Immunodeficiency 31B, mycobacterial and viral infections, autosomal recessive AR 3 613796 STAT1 600555
3p22.2 Immunodeficiency 68 AR 3 612260 MYD88 602170
3q21.3 Immunodeficiency 21 AD 3 614172 GATA2 137295
3q29 Immunodeficiency 46 AR 3 616740 TFRC 190010
4q24 Immunodeficiency 75 AR 3 619126 TET2 612839
4q35.1 {Immunodeficiency 83, susceptibility to viral infections} AD, AR 3 613002 TLR3 603029
5p15.2 {Immunodeficiency 107, susceptibility to invasive staphylococcus aureus infection} AD 3 619986 OTULIN 615712
5p13.2 Immunodeficiency 104, severe combined AR 3 608971 IL7R 146661
5q11.2 ?Immunodeficiency 94 with autoinflammation and dysmorphic facies AD 3 619750 IL6ST 600694
5q13.1 Immunodeficiency 36 AD 3 616005 PIK3R1 171833
5q31.1 Immunodeficiency 93 and hypertrophic cardiomyopathy AR 3 619705 FNIP1 610594
5q31.1 Immunodeficiency 117, mycobacteriosis, autosomal recessive AR 3 620668 IRF1 147575
5q33.3 Immunodeficiency 29, mycobacteriosis AR 3 614890 IL12B 161561
5q35.1 Immunodeficiency 40 AR 3 616433 DOCK2 603122
5q35.1 Immunodeficiency 81 AR 3 619374 LCP2 601603
6p25.2 Immunodeficiency 57 with autoinflammation AR 3 618108 RIPK1 603453
6p21.31 Immunodeficiency 87 and autoimmunity AR 3 619573 DEF6 610094
6q14.1 Immunodeficiency 23 AR 3 615816 PGM3 172100
6q15 Immunodeficiency 60 and autoimmunity AD 3 618394 BACH2 605394
6q23.3 Immunodeficiency 27A, mycobacteriosis, AR AR 3 209950 IFNGR1 107470
6q23.3 Immunodeficiency 27B, mycobacteriosis, AD AD 3 615978 IFNGR1 107470
7p22.2 Immunodeficiency 11B with atopic dermatitis AD 3 617638 CARD11 607210
7p22.2 Immunodeficiency 11A AR 3 615206 CARD11 607210
7q22.1 Immunodeficiency 71 with inflammatory disease and congenital thrombocytopenia AR 3 617718 ARPC1B 604223
7q22.3 Immunodeficiency 97 with autoinflammation AR 3 619802 PIK3CG 601232
8p11.21 Immunodeficiency 15A AD 3 618204 IKBKB 603258
8p11.21 Immunodeficiency 15B AR 3 615592 IKBKB 603258
8q11.21 Immunodeficiency 26, with or without neurologic abnormalities AR 3 615966 PRKDC 600899
8q11.21 Immunodeficiency 54 AR 3 609981 MCM4 602638
9q22.2 Immunodeficiency 82 with systemic inflammation AD 3 619381 SYK 600085
9q34.3 Immunodeficiency 103, susceptibility to fungal infection AR 3 212050 CARD9 607212
10p15.1 Immunodeficiency 41 with lymphoproliferation and autoimmunity AR 3 606367 IL2RA 147730
10p13 Immunodeficiency 80 with or without cardiomyopathy AR 3 619313 MCM10 609357
11p15.5 ?Immunodeficiency 39 AR 3 616345 IRF7 605047
11p15.4 Immunodeficiency 10 AR 3 612783 STIM1 605921
11q12.1 Immunodeficiency 77 AD 3 619223 MPEG1 610390
11q13.3 Immunodeficiency 90 with encephalopathy, functional hyposplenia, and hepatic dysfunction AR 3 613759 FADD 602457
11q23.3 Immunodeficiency 18 AR 3 615615 CD3E 186830
11q23.3 Immunodeficiency 18, SCID variant AR 3 615615 CD3E 186830
11q23.3 Immunodeficiency 19, severe combined AR 3 615617 CD3D 186790
11q23.3 Immunodeficiency 17, CD3 gamma deficient AR 3 615607 CD3G 186740
11q23.3 ?Immunodeficiency 59 and hypoglycemia AR 3 233600 HYOU1 601746
12p13.31 Immunodeficiency 79 AR 3 619238 CD4 186940
12q12 Immunodeficiency 67 AR 3 607676 IRAK4 606883
12q13.13-q13.2 Immunodeficiency 72 with autoinflammation AR 3 618982 NCKAP1L 141180
12q13.3 Immunodeficiency 44 AR 3 616636 STAT2 600556
12q15 ?Immunodeficiency 69, mycobacteriosis AR 3 618963 IFNG 147570
12q24.13 Immunodeficiency 100 with pulmonary alveolar proteinosis and hypogammaglobulinemia AD 3 618042 OAS1 164350
12q24.31 Immunodeficiency 9 AR 3 612782 ORAI1 610277
13q33.1 Immunodeficiency 78 with autoimmunity and developmental delay AR 3 619220 TPP2 190470
14q11.2 Immunodeficiency 7, TCR-alpha/beta deficient AR 3 615387 TRAC 186880
14q11.2 ?Immunodeficiency 108 with autoinflammation AR 3 260570 CEBPE 600749
14q12 Immunodeficiency 115 with autoinflammation AR 3 620632 RNF31 612487
14q12 Immunodeficiency 65, susceptibility to viral infections AR 3 618648 IRF9 147574
14q32.2 Immunodeficiency 49, severe combined AD 3 617237 BCL11B 606558
15q14 Immunodeficiency 64 AR 3 618534 RASGRP1 603962
15q21.1 Immunodeficiency 43 AR 3 241600 B2M 109700
15q21.2 Immunodeficiency 86, mycobacteriosis AR 3 619549 SPPL2A 608238
16p12.1 Immunodeficiency 56 AR 3 615207 IL21R 605383
16p11.2 Immunodeficiency 52 AR 3 617514 LAT 602354
16p11.2 Immunodeficiency 8 AR 3 615401 CORO1A 605000
16q22.1 Immunodeficiency 58 AR 3 618131 CARMIL2 610859
16q24.1 Immunodeficiency 32B, monocyte and dendritic cell deficiency, autosomal recessive AR 3 226990 IRF8 601565
16q24.1 Immunodeficiency 32A, mycobacteriosis, autosomal dominant AD 3 614893 IRF8 601565
17q11.2 ?Immunodeficiency 13 AD 3 615518 UNC119 604011
17q12-q21.1 ?Immunodeficiency 84 AD 3 619437 IKZF3 606221
17q21.31 Immunodeficiency 112 AR 3 620449 MAP3K14 604655
17q21.32 ?Immunodeficiency 88 AR 3 619630 TBX21 604895
18q21.32 Immunodeficiency 12 AR 3 615468 MALT1 604860
19p13.3 Hatipoglu immunodeficiency syndrome AR 3 620331 DPP9 608258
19p13.2 Immunodeficiency 35 AR 3 611521 TYK2 176941
19p13.11 Immunodeficiency 76 AR 3 619164 FCHO1 613437
19p13.11 Immunodeficiency 30 AR 3 614891 IL12RB1 601604
19q13.2 ?Immunodeficiency 62 AR 3 618459 ARHGEF1 601855
19q13.32 ?Immunodeficiency 53 AR 3 617585 RELB 604758
19q13.33 Immunodeficiency 96 AR 3 619774 LIG1 126391
20p11.23 ?Immunodeficiency 101 (varicella zoster virus-specific) AD 3 619872 POLR3F 617455
20p11.21 Immunodeficiency 55 AR 3 617827 GINS1 610608
20q11.23 ?Immunodeficiency 99 with hypogammaglobulinemia and autoimmune cytopenias AR 3 619846 CTNNBL1 611537
20q13.12 T-cell immunodeficiency, recurrent infections, autoimmunity, and cardiac malformations AR 3 614868 STK4 604965
20q13.13 Immunodeficiency 91 and hyperinflammation AR 3 619644 ZNFX1 618931
21q22.11 Immunodeficiency 45 AR 3 616669 IFNAR2 602376
21q22.11 Immunodeficiency 106, susceptibility to viral infections AR 3 619935 IFNAR1 107450
21q22.11 Immunodeficiency 28, mycobacteriosis AR 3 614889 IFNGR2 147569
21q22.3 Immunodeficiency 114, folate-responsive AR 3 620603 SLC19A1 600424
22q11.1 Immunodeficiency 51 AR 3 613953 IL17RA 605461
22q12.3 ?Immunodeficiency 85 and autoimmunity AD 3 619510 TOM1 604700
22q12.3 Immunodeficiency 63 with lymphoproliferation and autoimmunity AR 3 618495 IL2RB 146710
22q13.1 ?Immunodeficiency 73C with defective neutrophil chemotaxis and hypogammaglobulinemia AR 3 618987 RAC2 602049
22q13.1 Immunodeficiency 73B with defective neutrophil chemotaxis and lymphopenia AD 3 618986 RAC2 602049
22q13.1 Immunodeficiency 73A with defective neutrophil chemotaxix and leukocytosis AD 3 608203 RAC2 602049
22q13.1 ?Immunodeficiency 89 and autoimmunity AR 3 619632 CARD10 607209
22q13.1-q13.2 ?Immunodeficiency 66 AR 3 618847 MKL1 606078
Xp22.2 Immunodeficiency 74, COVID19-related, X-linked XLR 3 301051 TLR7 300365
Xp22.2 Immunodeficiency 98 with autoinflammation, X-linked SMo, XL 3 301078 TLR8 300366
Xp22.12 ?Immunodeficiency 61 XLR 3 300310 SH3KBP1 300374
Xp21.1-p11.4 Immunodeficiency 34, mycobacteriosis, X-linked XLR 3 300645 CYBB 300481
Xp11.23 Wiskott-Aldrich syndrome XLR 3 301000 WAS 300392
Xq12 Immunodeficiency 50 XLR 3 300988 MSN 309845
Xq13.1 Severe combined immunodeficiency, X-linked XLR 3 300400 IL2RG 308380
Xq13.1 Combined immunodeficiency, X-linked, moderate XLR 3 312863 IL2RG 308380
Xq22.1 Agammaglobulinemia, X-linked 1 XLR 3 300755 BTK 300300
Xq24 Immunodeficiency 118, mycobacteriosis XLR 3 301115 MCTS1 300587
Xq25 Lymphoproliferative syndrome, X-linked, 1 XLR 3 308240 SH2D1A 300490
Xq26.1 Immunodeficiency 102 XLR 3 301082 SASH3 300441
Xq26.3 Immunodeficiency, X-linked, with hyper-IgM XLR 3 308230 TNFSF5 300386
Xq28 Immunodeficiency 47 XLR 3 300972 ATP6AP1 300197
Xq28 Immunodeficiency 33 XLR 3 300636 IKBKG 300248

TEXT

A number sign (#) is used with this entry because of evidence that immunodeficiency-25 (IMD25) is caused by homozygous mutation in the CD247 (CD3Z) gene (186780) on chromosome 1q24. One such patient has been reported.


Clinical Features

Rieux-Laucat et al. (2006) described a boy, of Caribbean origin and of unknown paternity, with primary T-cell immunodeficiency. He presented at the age of 4 months with erythroderma, protracted diarrhea, and pulmonary abscesses caused by Pseudomonas aeruginosa. During the next 2 years, he had recurrent episodes of herpes simplex virus infection of the mouth and skin, 2 episodes of oral and skin infections with Candida albicans, and 2 pulmonary infections. The patient's T-cell counts were very low, B-cell counts were normal, and there was eosinophilia. A haploidentical bone marrow transplantation, with the mother as the donor, was performed when the patient was 30 months old. The transplant resulted in sustained donor-recipient chimerism and correction of the immunodeficiency. Three years later, the patient was well and living at home.


Molecular Genetics

In a boy with primary T-cell immunodeficiency, Rieux-Laucat et al. (2006) identified homozygosity for a germline Q70X mutation in the CD247 gene (186780.0001). Some of the patient's T cells had low levels of the T-cell receptor-CD3 complex and carried the Q70X mutation on both alleles of the CD3Z gene, whereas other T cells had normal levels of the complex and bore the Q70X mutation on only 1 allele of CD3Z, plus 1 of 3 heterozygous somatic mutations of CD3Z on the other allele (186780.0002-186780.0004), allowing expression of poorly functional T-cell receptor-CD3 complexes. Thus the patient had both inherited and somatic CD3Z mutations as the basis of the T-cell deficiency.


History

Alarcon et al. (1988) described 2 brothers who had low expression of antigen receptor on the surface of their T lymphocytes. Functional analyses of their T cells showed impaired immune response to alloantigens, tetanus toxoid, and mitogens. Biochemical studies showed reduced intracellular expression of CD3-zeta chains; all other components of the T-cell receptor-CD3 complex were expressed normally intracellularly. Alarcon et al. (1988) suggested that the impaired association of the CD3-zeta chain with the other chains of the complex was the primary defect leading to the low expression of T-cell receptor-CD3 complex and immunodeficiency in these children. However, further studies of these brothers by Arnaiz-Villena et al. (1991, 1992) indicated a CD3-gamma abnormality, and genetic analysis identified compound heterozygous mutation in the CD3G gene (186740.0001 and 186740.0002), consistent with primary immunodeficiency due to a defect in the gamma subunit of the CD3 complex (IMD17; 615607).


REFERENCES

  1. Alarcon, B., Regueiro, J. R., Arnaiz-Villena, A., Terhorst, C. Familial defect in the surface expression of the T-cell receptor-CD3 complex. New Eng. J. Med. 319: 1203-1208, 1988. [PubMed: 3262828, related citations] [Full Text]

  2. Arnaiz-Villena, A., Perez-Aciego, P., Ballestin, C., Sotelo, T., Perez-Seoane, C., Martin-Villa, J. M., Regueiro, J. R. Biochemical basis of a novel T lymphocyte receptor immunodeficiency by immunohistochemistry: a possible CD3-gamma abnormality. Lab. Invest. 64: 675-681, 1991. [PubMed: 1709425, related citations]

  3. Arnaiz-Villena, A., Timon, M., Corell, A., Perez-Aciego, P., Martin-Villa, J. M., Regueiro, J. R. Primary immunodeficiency caused by mutations in the gene encoding the CD3-gamma subunit of the T-lymphocyte receptor. New Eng. J. Med. 327: 529-533, 1992. [PubMed: 1635567, related citations] [Full Text]

  4. Rieux-Laucat, F., Hivroz, C., Lim, A., Mateo, V., Pellier, I., Selz, F., Fischer, A., Le Deist, F. Inherited and somatic CD3-zeta mutations in a patient with T-cell deficiency. New Eng. J. Med. 354: 1913-1921, 2006. [PubMed: 16672702, related citations] [Full Text]


Contributors:
Cassandra L. Kniffin - updated : 1/29/2014
Creation Date:
Victor A. McKusick : 6/6/2006
carol : 08/07/2014
carol : 8/6/2014
mgross : 1/31/2014
ckniffin : 1/29/2014
carol : 6/7/2006
carol : 6/7/2006
carol : 6/7/2006

# 610163

IMMUNODEFICIENCY 25; IMD25


Alternative titles; symbols

IMMUNODEFICIENCY DUE TO DEFECT IN CD3-ZETA


ORPHA: 169160;   DO: 0111942;  


Phenotype-Gene Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Gene/Locus Gene/Locus
MIM number
1q24.2 ?Immunodeficiency 25 610163 Autosomal recessive 3 CD247 186780

TEXT

A number sign (#) is used with this entry because of evidence that immunodeficiency-25 (IMD25) is caused by homozygous mutation in the CD247 (CD3Z) gene (186780) on chromosome 1q24. One such patient has been reported.


Clinical Features

Rieux-Laucat et al. (2006) described a boy, of Caribbean origin and of unknown paternity, with primary T-cell immunodeficiency. He presented at the age of 4 months with erythroderma, protracted diarrhea, and pulmonary abscesses caused by Pseudomonas aeruginosa. During the next 2 years, he had recurrent episodes of herpes simplex virus infection of the mouth and skin, 2 episodes of oral and skin infections with Candida albicans, and 2 pulmonary infections. The patient's T-cell counts were very low, B-cell counts were normal, and there was eosinophilia. A haploidentical bone marrow transplantation, with the mother as the donor, was performed when the patient was 30 months old. The transplant resulted in sustained donor-recipient chimerism and correction of the immunodeficiency. Three years later, the patient was well and living at home.


Molecular Genetics

In a boy with primary T-cell immunodeficiency, Rieux-Laucat et al. (2006) identified homozygosity for a germline Q70X mutation in the CD247 gene (186780.0001). Some of the patient's T cells had low levels of the T-cell receptor-CD3 complex and carried the Q70X mutation on both alleles of the CD3Z gene, whereas other T cells had normal levels of the complex and bore the Q70X mutation on only 1 allele of CD3Z, plus 1 of 3 heterozygous somatic mutations of CD3Z on the other allele (186780.0002-186780.0004), allowing expression of poorly functional T-cell receptor-CD3 complexes. Thus the patient had both inherited and somatic CD3Z mutations as the basis of the T-cell deficiency.


History

Alarcon et al. (1988) described 2 brothers who had low expression of antigen receptor on the surface of their T lymphocytes. Functional analyses of their T cells showed impaired immune response to alloantigens, tetanus toxoid, and mitogens. Biochemical studies showed reduced intracellular expression of CD3-zeta chains; all other components of the T-cell receptor-CD3 complex were expressed normally intracellularly. Alarcon et al. (1988) suggested that the impaired association of the CD3-zeta chain with the other chains of the complex was the primary defect leading to the low expression of T-cell receptor-CD3 complex and immunodeficiency in these children. However, further studies of these brothers by Arnaiz-Villena et al. (1991, 1992) indicated a CD3-gamma abnormality, and genetic analysis identified compound heterozygous mutation in the CD3G gene (186740.0001 and 186740.0002), consistent with primary immunodeficiency due to a defect in the gamma subunit of the CD3 complex (IMD17; 615607).


REFERENCES

  1. Alarcon, B., Regueiro, J. R., Arnaiz-Villena, A., Terhorst, C. Familial defect in the surface expression of the T-cell receptor-CD3 complex. New Eng. J. Med. 319: 1203-1208, 1988. [PubMed: 3262828] [Full Text: https://doi.org/10.1056/NEJM198811033191806]

  2. Arnaiz-Villena, A., Perez-Aciego, P., Ballestin, C., Sotelo, T., Perez-Seoane, C., Martin-Villa, J. M., Regueiro, J. R. Biochemical basis of a novel T lymphocyte receptor immunodeficiency by immunohistochemistry: a possible CD3-gamma abnormality. Lab. Invest. 64: 675-681, 1991. [PubMed: 1709425]

  3. Arnaiz-Villena, A., Timon, M., Corell, A., Perez-Aciego, P., Martin-Villa, J. M., Regueiro, J. R. Primary immunodeficiency caused by mutations in the gene encoding the CD3-gamma subunit of the T-lymphocyte receptor. New Eng. J. Med. 327: 529-533, 1992. [PubMed: 1635567] [Full Text: https://doi.org/10.1056/NEJM199208203270805]

  4. Rieux-Laucat, F., Hivroz, C., Lim, A., Mateo, V., Pellier, I., Selz, F., Fischer, A., Le Deist, F. Inherited and somatic CD3-zeta mutations in a patient with T-cell deficiency. New Eng. J. Med. 354: 1913-1921, 2006. [PubMed: 16672702] [Full Text: https://doi.org/10.1056/NEJMoa053750]


Contributors:
Cassandra L. Kniffin - updated : 1/29/2014

Creation Date:
Victor A. McKusick : 6/6/2006

Edit History:
carol : 08/07/2014
carol : 8/6/2014
mgross : 1/31/2014
ckniffin : 1/29/2014
carol : 6/7/2006
carol : 6/7/2006
carol : 6/7/2006