Entry - #618770 - SPASTIC PARAPLEGIA 82, AUTOSOMAL RECESSIVE; SPG82 - OMIM
# 618770

SPASTIC PARAPLEGIA 82, AUTOSOMAL RECESSIVE; SPG82


Phenotype-Gene Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Gene/Locus Gene/Locus
MIM number
17q25.3 Spastic paraplegia 82, autosomal recessive 618770 AR 3 PCYT2 602679
Clinical Synopsis
 
Phenotypic Series
 

INHERITANCE
- Autosomal recessive
GROWTH
Other
- Poor overall growth
HEAD & NECK
Ears
- Sensorineural hearing impairment (in some patients)
Eyes
- Visual impairment
- Rotary nystagmus
- Retinal dystrophy
- Cataracts
SKELETAL
- Joint contractures
Spine
- Scoliosis
MUSCLE, SOFT TISSUES
- Axial hypotonia
- Peripheral hypertonia
NEUROLOGIC
Central Nervous System
- Global developmental delay
- Delayed motor development
- Inability to walk
- Unsteady gait
- Ataxia
- Poor coordination
- Loss of motor skills
- Impaired intellectual development
- Delayed speech and language
- Dysarthria
- Absent language
- Spasticity
- Hyperreflexia
- Extensor plantar responses
- Ankle clonus
- Tremor
- Seizures
- White matter abnormalities seen on brain imaging
- Cerebral atrophy
- Cerebellar atrophy
- Thoracic spinal cord atrophy
MISCELLANEOUS
- Onset in infancy
- Progressive disorder
MOLECULAR BASIS
- Caused by mutation in the phosphate cytidylyltransferase 2, ethanolamine gene (PCYT2, 602679.0001)
Spastic paraplegia - PS303350 - 83 Entries
Location Phenotype Inheritance Phenotype
mapping key
Phenotype
MIM number
Gene/Locus Gene/Locus
MIM number
1p36.13 Spastic paraplegia 78, autosomal recessive AR 3 617225 ATP13A2 610513
1p34.1 Spastic paraplegia 83, autosomal recessive AR 3 619027 HPDL 618994
1p31.1-p21.1 Spastic paraplegia 29, autosomal dominant AD 2 609727 SPG29 609727
1p13.3 ?Spastic paraplegia 63, autosomal recessive AR 3 615686 AMPD2 102771
1p13.2 Spastic paraplegia 47, autosomal recessive AR 3 614066 AP4B1 607245
1q32.1 Spastic paraplegia 23, autosomal recessive AR 3 270750 DSTYK 612666
1q42.13 ?Spastic paraplegia 44, autosomal recessive AR 3 613206 GJC2 608803
1q42.13 ?Spastic paraplegia 74, autosomal recessive AR 3 616451 IBA57 615316
2p23.3 Spastic paraplegia 81, autosomal recessive AR 3 618768 SELENOI 607915
2p22.3 Spastic paraplegia 4, autosomal dominant AD 3 182601 SPAST 604277
2p11.2 Spastic paraplegia 31, autosomal dominant AD 3 610250 REEP1 609139
2q33.1 Spastic paraplegia 13, autosomal dominant AD 3 605280 HSPD1 118190
2q37.3 Spastic paraplegia 30, autosomal recessive AD, AR 3 610357 KIF1A 601255
2q37.3 Spastic paraplegia 30, autosomal dominant AD, AR 3 610357 KIF1A 601255
3q12.2 ?Spastic paraplegia 57, autosomal recessive AR 3 615658 TFG 602498
3q25.31 Spastic paraplegia 42, autosomal dominant AD 3 612539 SLC33A1 603690
3q27-q28 Spastic paraplegia 14, autosomal recessive AR 2 605229 SPG14 605229
4p16-p15 Spastic paraplegia 38, autosomal dominant AD 2 612335 SPG38 612335
4p13 Spastic paraplegia 79A, autosomal dominant AD 3 620221 UCHL1 191342
4p13 Spastic paraplegia 79B, autosomal recessive AR 3 615491 UCHL1 191342
4q25 Spastic paraplegia 56, autosomal recessive AR 3 615030 CYP2U1 610670
5q31.2 Spastic paraplegia 72A, autosomal dominant AD 3 615625 REEP2 609347
5q31.2 ?Spastic paraplegia 72B, autosomal recessive AR 3 620606 REEP2 609347
6p25.1 Spastic paraplegia 77, autosomal recessive AR 3 617046 FARS2 611592
6p21.33 Spastic paraplegia 86, autosomal recessive AR 3 619735 ABHD16A 142620
6q23-q24.1 Spastic paraplegia 25, autosomal recessive AR 2 608220 SPG25 608220
7p22.1 Spastic paraplegia 48, autosomal recessive AR 3 613647 AP5Z1 613653
7q22.1 Spastic paraplegia 50, autosomal recessive AR 3 612936 AP4M1 602296
8p22 Spastic paraplegia 53, autosomal recessive AR 3 614898 VPS37A 609927
8p21.1-q13.3 Spastic paraplegia 37, autosomal dominant AD 2 611945 SPG37 611945
8p11.23 Spastic paraplegia 18B, autosomal recessive AR 3 611225 ERLIN2 611605
8p11.23 Spastic paraplegia 18A, autosomal dominant AD 3 620512 ERLIN2 611605
8p11.23 Spastic paraplegia 54, autosomal recessive AR 3 615033 DDHD2 615003
8p11.21 Spastic paraplegia 85, autosomal recessive AR 3 619686 RNF170 614649
8q12.3 Spastic paraplegia 5A, autosomal recessive AR 3 270800 CYP7B1 603711
8q24.13 Spastic paraplegia 8, autosomal dominant AD 3 603563 WASHC5 610657
9p13.3 Spastic paraplegia 46, autosomal recessive AR 3 614409 GBA2 609471
9q Spastic paraplegia 19, autosomal dominant AD 2 607152 SPG19 607152
10q22.1-q24.1 Spastic paraplegia 27, autosomal recessive AR 2 609041 SPG27 609041
10q24.1 Spastic paraplegia 9B, autosomal recessive AR 3 616586 ALDH18A1 138250
10q24.1 Spastic paraplegia 9A, autosomal dominant AD 3 601162 ALDH18A1 138250
10q24.1 Spastic paraplegia 64, autosomal recessive AR 3 615683 ENTPD1 601752
10q24.2 Spastic paraplegia 33, autosomal dominant AD 3 610244 ZFYVE27 610243
10q24.31 Spastic paraplegia 62, autosomal recessive AR 3 615681 ERLIN1 611604
10q24.32-q24.33 Spastic paraplegia 45, autosomal recessive AR 3 613162 NT5C2 600417
11p14.1-p11.2 ?Spastic paraplegia 41, autosomal dominant AD 2 613364 SPG41 613364
11q12.3 Silver spastic paraplegia syndrome AD 3 270685 BSCL2 606158
11q13.1 Spastic paraplegia 76, autosomal recessive AR 3 616907 CAPN1 114220
12q13.3 Spastic paraplegia 70, autosomal recessive AR 3 620323 MARS1 156560
12q13.3 Spastic paraplegia 10, autosomal dominant AD 3 604187 KIF5A 602821
12q13.3 Spastic paraplegia 26, autosomal recessive AR 3 609195 B4GALNT1 601873
12q23-q24 Spastic paraplegia 36, autosomal dominant AD 2 613096 SPG36 613096
12q24.31 Spastic paraplegia 55, autosomal recessive AR 3 615035 MTRFR 613541
13q13.3 Troyer syndrome AR 3 275900 SPART 607111
13q14 Spastic paraplegia 24, autosomal recessive AR 2 607584 SPG24 607584
13q14.2 Spastic paraplegia 88, autosomal dominant AD 3 620106 KPNA3 601892
14q12-q21 Spastic paraplegia 32, autosomal recessive AR 2 611252 SPG32 611252
14q12 Spastic paraplegia 52, autosomal recessive AR 3 614067 AP4S1 607243
14q13.1 ?Spastic paraplegia 90B, autosomal recessive AD 3 620417 SPTSSA 613540
14q13.1 Spastic paraplegia 90A, autosomal dominant AD 3 620416 SPTSSA 613540
14q22.1 Spastic paraplegia 3A, autosomal dominant AD 3 182600 ATL1 606439
14q22.1 Spastic paraplegia 28, autosomal recessive AR 3 609340 DDHD1 614603
14q24.1 Spastic paraplegia 15, autosomal recessive AR 3 270700 ZFYVE26 612012
14q24.3 Spastic paraplegia 87, autosomal recessive AR 3 619966 TMEM63C 619953
15q11.2 Spastic paraplegia 6, autosomal dominant AD 3 600363 NIPA1 608145
15q21.1 Spastic paraplegia 11, autosomal recessive AR 3 604360 SPG11 610844
15q21.2 Spastic paraplegia 51, autosomal recessive AR 3 613744 AP4E1 607244
15q22.31 Mast syndrome AR 3 248900 ACP33 608181
16p12.3 Spastic paraplegia 61, autosomal recessive AR 3 615685 ARL6IP1 607669
16q13 Spastic paraplegia 89, autosomal recessive AR 3 620379 AMFR 603243
16q23.1 Spastic paraplegia 35, autosomal recessive AR 3 612319 FA2H 611026
16q24.3 Spastic paraplegia 7, autosomal recessive AD, AR 3 607259 PGN 602783
17q25.3 Spastic paraplegia 82, autosomal recessive AR 3 618770 PCYT2 602679
19p13.2 Spastic paraplegia 39, autosomal recessive AR 3 612020 PNPLA6 603197
19q12 ?Spastic paraplegia 43, autosomal recessive AR 3 615043 C19orf12 614297
19q13.12 Spastic paraplegia 75, autosomal recessive AR 3 616680 MAG 159460
19q13.32 Spastic paraplegia 12, autosomal dominant AD 3 604805 RTN2 603183
19q13.33 ?Spastic paraplegia 73, autosomal dominant AD 3 616282 CPT1C 608846
22q11.21 Spastic paraplegia 84, autosomal recessive AR 3 619621 PI4KA 600286
Xq11.2 Spastic paraplegia 16, X-linked, complicated XLR 2 300266 SPG16 300266
Xq22.2 Spastic paraplegia 2, X-linked XLR 3 312920 PLP1 300401
Xq24-q25 Spastic paraplegia 34, X-linked XLR 2 300750 SPG34 300750
Xq28 MASA syndrome XLR 3 303350 L1CAM 308840

TEXT

A number sign (#) is used with this entry because of evidence that autosomal recessive spastic paraplegia-82 (SPG82) is caused by homozygous or compound heterozygous mutation in the PCYT2 gene (602679) on chromosome 17q25.


Description

Autosomal recessive spastic paraplegia-82 (SPG82) is a progressive neurologic disorder characterized by global developmental delay apparent from infancy, significant motor impairment, and progressive spasticity mainly affecting the lower limbs. Some patients never achieve walking, whereas others lose the ability to walk or walk with an unsteady gait. Additional features include variably impaired intellectual development with language difficulties, ocular anomalies, such as nystagmus and visual impairment, and seizures. Brain imaging shows progressive cerebral and cerebellar atrophy, as well as white matter hyperintensities. Based on the additional abnormalities, the disorder can be classified as a type of complicated SPG (summary by Vaz et al., 2019).

For a discussion of genetic heterogeneity of autosomal recessive spastic paraplegia, see SPG5A (270800).


Clinical Features

Vaz et al. (2019) reported 5 patients from 4 unrelated families, 3 of which were consanguineous, with SPG82. The patients, who ranged in age from 3 to 20 years, presented with delayed motor development associated with progressive spasticity mainly affecting the lower limbs with hyperreflexia and extensor plantar responses. Two patients never achieved walking, 1 lost the ability, and 2 walked with an unsteady ataxic gait. All developed childhood-onset seizures that were mostly controlled, and all had impaired intellectual development, which was severe in 2 and mild in 3; the 2 severely affected individuals were nonverbal. More variable features included poor overall growth, rotary nystagmus, tremor, sensorineural hearing loss, visual impairment, axial hypotonia, poor motor coordination, dysarthria, ankle clonus, scoliosis, and joint contractures in older patients. Brain imaging was normal at first but later showed progressive cerebral and cerebellar atrophy, as well as white matter hyperintensities.

Kaiyrzhanov et al. (2021) reported a patient (case 1) with SPG82 who presented at 3 years of age with reduced vision. At 5 years of age, she was diagnosed with severe early-onset retinal dystrophy and was found to have cataracts. She did not have intellectual impairment. She developed seizures at age 13 years and progressive bilateral sensorineural hearing loss at age 19 years. At age 16 years, she developed a gait abnormality, hyperreflexia, ataxia, and nystagmus. MRIs showed cerebellar atrophy and atrophy of the thoracic spinal cord.


Inheritance

The transmission pattern of SPG82 in the families reported by Vaz et al. (2019) was consistent with autosomal recessive inheritance.


Molecular Genetics

In 5 patients from 4 unrelated families with SPG82, Vaz et al. (2019) identified homozygous or compound heterozygous mutations in the PCYT2 gene (602679.0001-602679.0003). The mutations, which were found by exome sequencing and confirmed by Sanger sequencing through different laboratories, segregated with the disorder in all families. Patient fibroblasts showed significantly decreased, but not absent, PCYT2 activity compared to controls; residual activity ranged from 15 to 20% of controls. Western blot analysis showed absence of the normal 49-kD protein, with variably decreased levels of the normally most abundant protein. Detailed lipidomic studies of patient fibroblasts showed several abnormalities, including accumulation of phosphatidylcholine etherphospholipids (PC(O)), neutral lipid species, and neutral etherlipid species. There was also a decrease in PE(O) (PE etherphospholipids) and PE/PC plasmalogen species. Patient blood samples also showed an abnormal accumulation of PC(O) compared to controls. Since some of the lipid levels did not reach expected levels of change, the authors suggested compensatory biochemical pathways. In summary, Vaz et al. (2019) concluded that etherlipid homeostasis is critical for the development and function of the brain.

In a patient (case 1) with SPG82, Kaiyrzhanov et al. (2021) identified compound heterozygous mutations in the PCYT2 gene (602679.0004 and 602679.0005). The mutations were identified by whole-exome sequencing and confirmed by Sanger sequencing. Each parent was heterozygous for one of the mutations.


REFERENCES

  1. Kaiyrzhanov, R., Wortmann, S., Reid, T., Dehghani, M., Vahidi Mehrjardi, M. Y., Alhaddad, B., Wagner, M., Deschauer, M., Cordts, I., Fernandez-Murray, J. P., Treffer, V., Metanat, Z., Pitman, A., Houlden, H., Meitinger, T., Carroll, C., McMaster, C. R., Maroofian, R. Defective phosphatidylethanolamine biosynthesis leads to a broad ataxia-spasticity spectrum. Brain 144: e30, 2021. Note: Erratum: Brain 144: e52, 2021. [PubMed: 33454747, related citations] [Full Text]

  2. Vaz, F. M., McDermott, J. H., Alders, M., Wortmann, S. B., Kolker, S., Pras-Raves, M. L., Vervaart, M. A. T., van Lenthe, H., Luyf, A. C. M., Elfrink, H. L., Metcalfe, K., Cuvertino, S., and 13 others. Mutations in PCYT2 disrupt etherlipid biosynthesis and cause a complex hereditary spastic paraplegia. Brain 142: 3382-3397, 2019. [PubMed: 31637422, images, related citations] [Full Text]


Contributors:
Hilary J. Vernon - updated : 08/18/2023
Creation Date:
Cassandra L. Kniffin : 02/05/2020
carol : 08/18/2023
carol : 02/17/2020
carol : 02/14/2020
ckniffin : 02/06/2020

# 618770

SPASTIC PARAPLEGIA 82, AUTOSOMAL RECESSIVE; SPG82


ORPHA: 631073;   DO: 0112343;  


Phenotype-Gene Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Gene/Locus Gene/Locus
MIM number
17q25.3 Spastic paraplegia 82, autosomal recessive 618770 Autosomal recessive 3 PCYT2 602679

TEXT

A number sign (#) is used with this entry because of evidence that autosomal recessive spastic paraplegia-82 (SPG82) is caused by homozygous or compound heterozygous mutation in the PCYT2 gene (602679) on chromosome 17q25.


Description

Autosomal recessive spastic paraplegia-82 (SPG82) is a progressive neurologic disorder characterized by global developmental delay apparent from infancy, significant motor impairment, and progressive spasticity mainly affecting the lower limbs. Some patients never achieve walking, whereas others lose the ability to walk or walk with an unsteady gait. Additional features include variably impaired intellectual development with language difficulties, ocular anomalies, such as nystagmus and visual impairment, and seizures. Brain imaging shows progressive cerebral and cerebellar atrophy, as well as white matter hyperintensities. Based on the additional abnormalities, the disorder can be classified as a type of complicated SPG (summary by Vaz et al., 2019).

For a discussion of genetic heterogeneity of autosomal recessive spastic paraplegia, see SPG5A (270800).


Clinical Features

Vaz et al. (2019) reported 5 patients from 4 unrelated families, 3 of which were consanguineous, with SPG82. The patients, who ranged in age from 3 to 20 years, presented with delayed motor development associated with progressive spasticity mainly affecting the lower limbs with hyperreflexia and extensor plantar responses. Two patients never achieved walking, 1 lost the ability, and 2 walked with an unsteady ataxic gait. All developed childhood-onset seizures that were mostly controlled, and all had impaired intellectual development, which was severe in 2 and mild in 3; the 2 severely affected individuals were nonverbal. More variable features included poor overall growth, rotary nystagmus, tremor, sensorineural hearing loss, visual impairment, axial hypotonia, poor motor coordination, dysarthria, ankle clonus, scoliosis, and joint contractures in older patients. Brain imaging was normal at first but later showed progressive cerebral and cerebellar atrophy, as well as white matter hyperintensities.

Kaiyrzhanov et al. (2021) reported a patient (case 1) with SPG82 who presented at 3 years of age with reduced vision. At 5 years of age, she was diagnosed with severe early-onset retinal dystrophy and was found to have cataracts. She did not have intellectual impairment. She developed seizures at age 13 years and progressive bilateral sensorineural hearing loss at age 19 years. At age 16 years, she developed a gait abnormality, hyperreflexia, ataxia, and nystagmus. MRIs showed cerebellar atrophy and atrophy of the thoracic spinal cord.


Inheritance

The transmission pattern of SPG82 in the families reported by Vaz et al. (2019) was consistent with autosomal recessive inheritance.


Molecular Genetics

In 5 patients from 4 unrelated families with SPG82, Vaz et al. (2019) identified homozygous or compound heterozygous mutations in the PCYT2 gene (602679.0001-602679.0003). The mutations, which were found by exome sequencing and confirmed by Sanger sequencing through different laboratories, segregated with the disorder in all families. Patient fibroblasts showed significantly decreased, but not absent, PCYT2 activity compared to controls; residual activity ranged from 15 to 20% of controls. Western blot analysis showed absence of the normal 49-kD protein, with variably decreased levels of the normally most abundant protein. Detailed lipidomic studies of patient fibroblasts showed several abnormalities, including accumulation of phosphatidylcholine etherphospholipids (PC(O)), neutral lipid species, and neutral etherlipid species. There was also a decrease in PE(O) (PE etherphospholipids) and PE/PC plasmalogen species. Patient blood samples also showed an abnormal accumulation of PC(O) compared to controls. Since some of the lipid levels did not reach expected levels of change, the authors suggested compensatory biochemical pathways. In summary, Vaz et al. (2019) concluded that etherlipid homeostasis is critical for the development and function of the brain.

In a patient (case 1) with SPG82, Kaiyrzhanov et al. (2021) identified compound heterozygous mutations in the PCYT2 gene (602679.0004 and 602679.0005). The mutations were identified by whole-exome sequencing and confirmed by Sanger sequencing. Each parent was heterozygous for one of the mutations.


REFERENCES

  1. Kaiyrzhanov, R., Wortmann, S., Reid, T., Dehghani, M., Vahidi Mehrjardi, M. Y., Alhaddad, B., Wagner, M., Deschauer, M., Cordts, I., Fernandez-Murray, J. P., Treffer, V., Metanat, Z., Pitman, A., Houlden, H., Meitinger, T., Carroll, C., McMaster, C. R., Maroofian, R. Defective phosphatidylethanolamine biosynthesis leads to a broad ataxia-spasticity spectrum. Brain 144: e30, 2021. Note: Erratum: Brain 144: e52, 2021. [PubMed: 33454747] [Full Text: https://doi.org/10.1093/brain/awaa442]

  2. Vaz, F. M., McDermott, J. H., Alders, M., Wortmann, S. B., Kolker, S., Pras-Raves, M. L., Vervaart, M. A. T., van Lenthe, H., Luyf, A. C. M., Elfrink, H. L., Metcalfe, K., Cuvertino, S., and 13 others. Mutations in PCYT2 disrupt etherlipid biosynthesis and cause a complex hereditary spastic paraplegia. Brain 142: 3382-3397, 2019. [PubMed: 31637422] [Full Text: https://doi.org/10.1093/brain/awz291]


Contributors:
Hilary J. Vernon - updated : 08/18/2023

Creation Date:
Cassandra L. Kniffin : 02/05/2020

Edit History:
carol : 08/18/2023
carol : 02/17/2020
carol : 02/14/2020
ckniffin : 02/06/2020