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Items: 1 to 20 of 127

1.
Increases in the soil ammonia oxidizing phylotypes and their rechange due to long-term irrigation with wastewater
Eduardo J. Aguilar-Rangel, Alba Savin-Gámez, José Q. García-Maldonado, Blanca Prado, María Soledad Vásquez-Murrieta, Christina Siebe, Rocío J. Alcántara-Hernández
PLoS One. 2024; 19(4): e0299518. Published online 2024 Apr 11. doi: 10.1371/journal.pone.0299518
PMCID:
PMC11008854
ArticlePDF–2.9M
2.
An Engineered Hypercompact CRISPR-Cas12f System with Boosted Gene-Editing Activity
Tong Wu, Chang Liu, Siyuan Zou, Ruitu Lyu, Bowei Yang, Hao Yan, Minglei Zhao, Weixin Tang
Nat Chem Biol. Author manuscript; available in PMC 2023 Nov 5.
Published in final edited form as: Nat Chem Biol. 2023 Nov; 19(11): 1384–1393. Published online 2023 Jul 3. doi: 10.1038/s41589-023-01380-9
Correction in:
Nat Chem Biol. 2023 Dec 1
PMCID:
PMC10625714
ArticlePDF–2.6M
3.
Occurrence of Harmful Algal Blooms in Freshwater Sources of Mindu and Nyumba ya Mungu Dams, Tanzania
Josephine J. Gobry, Hilda S. Bachwenkizi, Offoro N. Kimambo, Faustin N. Ngassapa, Kessy F. Kilulya
J Toxicol. 2023; 2023: 5532962. Published online 2023 Oct 16. doi: 10.1155/2023/5532962
PMCID:
PMC10593555
ArticlePDF–1.1M
4.
Programmable RNA-guided DNA endonucleases are widespread in eukaryotes and their viruses
Kaiyi Jiang, Justin Lim, Samantha Sgrizzi, Michael Trinh, Alisan Kayabolen, Natalya Yutin, Weidong Bao, Kazuki Kato, Eugene V. Koonin, Jonathan S. Gootenberg, Omar O. Abudayyeh
Sci Adv. 2023 Sep 29; 9(39): eadk0171. Published online 2023 Sep 27. doi: 10.1126/sciadv.adk0171
PMCID:
PMC10530073
ArticlePDF–2.0M
5.
Development and preliminary assessment of a CRISPR–Cas12a-based multiplex detection of Mycobacterium tuberculosis complex
Jing Xiao, Jieqiong Li, Shuting Quan, Yacui Wang, Guanglu Jiang, Yi Wang, Hairong Huang, Weiwei Jiao, Adong Shen
Front Bioeng Biotechnol. 2023; 11: 1233353. Published online 2023 Aug 25. doi: 10.3389/fbioe.2023.1233353
PMCID:
PMC10497956
ArticlePDF–2.6M
6.
The applications of CRISPR/Cas-mediated genome editing in genetic hearing loss
Junhao Wu, Yong Tao, Di Deng, Zhaoli Meng, Yu Zhao
Cell Biosci. 2023; 13: 93. Published online 2023 May 20. doi: 10.1186/s13578-023-01021-7
PMCID:
PMC10199548
ArticlePDF–3.0M
7.
Miniature CRISPR-Cas12 endonucleases – Programmed DNA targeting in a smaller package
Giang T. Nguyen, Yukti Dhingra, Dipali G. Sashital
Curr Opin Struct Biol. Author manuscript; available in PMC 2023 Dec 1.
Published in final edited form as: Curr Opin Struct Biol. 2022 Dec; 77: 102466. Published online 2022 Sep 25. doi: 10.1016/j.sbi.2022.102466
PMCID:
PMC10114186
ArticlePDF–1.9M
8.
Cryo-EM structure of the transposon-associated TnpB enzyme
Ryoya Nakagawa, Hisato Hirano, Satoshi N. Omura, Suchita Nety, Soumya Kannan, Han Altae-Tran, Xiao Yao, Yuriko Sakaguchi, Takayuki Ohira, Wen Y. Wu, Hiroshi Nakayama, Yutaro Shuto, Tatsuki Tanaka, Fumiya K. Sano, Tsukasa Kusakizako, Yoshiaki Kise, Yuzuru Itoh, Naoshi Dohmae, John van der Oost, Tsutomu Suzuki, Feng Zhang, Osamu Nureki
Nature. 2023; 616(7956): 390–397. Published online 2023 Apr 5. doi: 10.1038/s41586-023-05933-9
PMCID:
PMC10097598
ArticlePDF–55M
9.
On the hidden diversity and niche specialization of the microbial realm of subterranean estuaries
Elisa Calvo‐Martin, Eva Teira, Xosé Antón Álvarez‐Salgado, Carlos Rocha, Shan Jiang, Maider Justel‐Díez, Juan Severino Pino Ibánhez
Environ Microbiol. 2022 Dec; 24(12): 5859–5881. Published online 2022 Aug 19. doi: 10.1111/1462-2920.16160
PMCID:
PMC10087554
ArticlePDF–4.6M
10.
Emu: Species-Level Microbial Community Profiling for Full-Length Nanopore 16S Reads
Kristen D. Curry, Qi Wang, Michael G. Nute, Alona Tyshaieva, Elizabeth Reeves, Sirena Soriano, Qinglong Wu, Enid Graeber, Patrick Finzer, Werner Mendling, Tor Savidge, Sonia Villapol, Alexander Dilthey, Todd J. Treangen
Nat Methods. Author manuscript; available in PMC 2023 Feb 20.
Published in final edited form as: Nat Methods. 2022 Jul; 19(7): 845–853. Published online 2022 Jun 30. doi: 10.1038/s41592-022-01520-4
PMCID:
PMC9939874
ArticlePDF–2.2M
11.
Study of gut microbiota alterations in Alzheimer's dementia patients from Kazakhstan
Aiym Kaiyrlykyzy, Samat Kozhakhmetov, Dmitriy Babenko, Gulnaz Zholdasbekova, Dinara Alzhanova, Farkhad Olzhayev, Aida Baibulatova, Almagul R. Kushugulova, Sholpan Askarova
Sci Rep. 2022; 12: 15115. Published online 2022 Sep 6. doi: 10.1038/s41598-022-19393-0
PMCID:
PMC9448737
ArticlePDF–3.7M
12.
Bioprospecting the microbiome of Red Sea Atlantis II brine pool for peptidases and biosynthetic genes with promising antibacterial activity
Laila Ziko, Omnia AbdelRaheem, Marina Nabil, Ramy K. Aziz, Rania Siam
Microb Cell Fact. 2022; 21: 109. Published online 2022 Jun 2. doi: 10.1186/s12934-022-01835-z
PMCID:
PMC9161539
ArticlePDF–1.5M
13.
Marine Group-II archaea dominate particle-attached as well as free-living archaeal assemblages in the surface waters of Kongsfjorden, Svalbard, Arctic Ocean
Anand Jain, Kottekkatu Padinchati Krishnan
Antonie Van Leeuwenhoek. 2021; 114(5): 633–647. Published online 2021 Mar 10. doi: 10.1007/s10482-021-01547-1
PMCID:
PMC7945612
ArticlePDF–1.8M
14.
Microbiomes in a manganese oxide producing ecosystem in the Ytterby mine, Sweden: impact on metal mobility
Susanne Sjöberg, Courtney W Stairs, Bert Allard, Felix Homa, Tom Martin, Viktor Sjöberg, Thijs J G Ettema, Christophe Dupraz
FEMS Microbiol Ecol. 2020 Nov; 96(11): fiaa169. Published online 2020 Aug 20. doi: 10.1093/femsec/fiaa169
PMCID:
PMC7593233
ArticlePDF–4.5M
15.
Genome‐resolved metagenomics and metatranscriptomics reveal niche differentiation in functionally redundant microbial communities at deep‐sea hydrothermal vents
David Galambos, Rika E. Anderson, Julie Reveillaud, Julie A. Huber
Environ Microbiol. 2019 Nov; 21(11): 4395–4410. Published online 2019 Oct 17. doi: 10.1111/1462-2920.14806
PMCID:
PMC6899741
ArticlePDF–1.5M
16.
Asgard archaea: Diversity, function, and evolutionary implications in a range of microbiomes
Fraser MacLeod, Gareth S. Kindler, Hon Lun Wong, Ray Chen, Brendan P. Burns
AIMS Microbiol. 2019; 5(1): 48–61. Published online 2019 Jan 30. doi: 10.3934/microbiol.2019.1.48
PMCID:
PMC6646929
ArticlePDF–1.2M
17.
Rumen microbiome in dairy calves fed copper and grape-pomace dietary supplementations: Composition and predicted functional profile
Filippo Biscarini, Fiorentina Palazzo, Federica Castellani, Giulia Masetti, Lisa Grotta, Angelo Cichelli, Giuseppe Martino
PLoS One. 2018; 13(11): e0205670. Published online 2018 Nov 29. doi: 10.1371/journal.pone.0205670
PMCID:
PMC6264861
ArticlePDF–1.1M
18.
Draft Genome Sequence of “Candidatus Bathyarchaeota” Archaeon BE326-BA-RLH, an Uncultured Denitrifier and Putative Anaerobic Methanotroph from South Africa’s Deep Continental Biosphere
Rachel L. Harris, Maggie C. Y. Lau, Andreia Cadar, Douglas H. Bartlett, Errol Cason, Esta van Heerden, Tullis C. Onstott
Microbiol Resour Announc. 2018 Nov; 7(20): e01295-18. Published online 2018 Nov 21. doi: 10.1128/MRA.01295-18
PMCID:
PMC6256629
ArticlePDF–169K
19.
Metagenomic Approaches for Understanding New Concepts in Microbial Science
Luana de Fátima Alves, Cauã Antunes Westmann, Gabriel Lencioni Lovate, Guilherme Marcelino Viana de Siqueira, Tiago Cabral Borelli, María-Eugenia Guazzaroni
Int J Genomics. 2018; 2018: 2312987. Published online 2018 Aug 23. doi: 10.1155/2018/2312987
PMCID:
PMC6126073
ArticlePDF–3.1M
20.
Characterization of Pustular Mats and Related Rivularia-Rich Laminations in Oncoids From the Laguna Negra Lake (Argentina)
Estela C. Mlewski, Céline Pisapia, Fernando Gomez, Lena Lecourt, Eliana Soto Rueda, Karim Benzerara, Bénédicte Ménez, Stephan Borensztajn, Frédéric Jamme, Matthieu Réfrégiers, Emmanuelle Gérard
Front Microbiol. 2018; 9: 996. Published online 2018 May 22. doi: 10.3389/fmicb.2018.00996
PMCID:
PMC5972317
ArticlePDF–7.2M

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