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Select item 99696761.

Gradual Recovery of Building Plumbing-Associated Microbial Communities after Extended Periods of Altered Water Demand during the COVID-19 Pandemic

Solize Vosloo, Linxuan Huo, Umang Chauhan, Irmarie Cotto, Benjamin Gincley, Katherine J. Vilardi, Bryan Yoon, Kaiqin Bian, Marco Gabrielli, Kelsey J. Pieper, Aron Stubbins, Ameet J. Pinto

Environ Sci Technol. 2023 Feb 28; 57(8): 3248–3259. Published online 2023 Feb 16. doi: 10.1021/acs.est.2c07333

PMCID:: PMC9969676

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Select item 95432622.

Genome-guided prediction of acid resistance mechanisms in acidophilic methanotrophs of phylogenetically deep-rooted Verrucomicrobia isolated from geothermal environments

Gonzalo Neira, Eva Vergara, David S. Holmes

Front Microbiol. 2022; 13: 900531. Published online 2022 Sep 23. doi: 10.3389/fmicb.2022.900531

PMCID:: PMC9543262

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Select item 93060793.

Efficient management of the nitritation-anammox microbiome through intermittent aeration: absence of the NOB guild and expansion and diversity of the NOx reducing guild suggests a highly reticulated nitrogen cycle

Alejandro Palomo, Daniela Azevedo, María Touceda-Suárez, Carlos Domingo-Félez, A. Gizem Mutlu, Arnaud Dechesne, Yulin Wang, Tong Zhang, Barth F. Smets

Environ Microbiome. 2022; 17: 39. Published online 2022 Jul 22. doi: 10.1186/s40793-022-00432-2

PMCID:: PMC9306079

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Select item 76420814.

Expanded Diversity and Metabolic Versatility of Marine Nitrite-Oxidizing Bacteria Revealed by Cultivation- and Genomics-Based Approaches

Soo-Je Park, Adrian-Ştefan Andrei, Paul-Adrian Bulzu, Vinicius S. Kavagutti, Rohit Ghai, Annika C. Mosier

Appl Environ Microbiol. 2020 Nov; 86(22): e01667-20. Prepublished online 2020 Sep 11. Published online 2020 Oct 28. doi: 10.1128/AEM.01667-20

PMCID:: PMC7642081

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Select item 75225335.

Genomic and Physiological Characteristics of a Novel Nitrite-Oxidizing Nitrospira Strain Isolated From a Drinking Water Treatment Plant

Hirotsugu Fujitani, Kengo Momiuchi, Kento Ishii, Manami Nomachi, Shuta Kikuchi, Norisuke Ushiki, Yuji Sekiguchi, Satoshi Tsuneda

Front Microbiol. 2020; 11: 545190. Published online 2020 Sep 15. doi: 10.3389/fmicb.2020.545190

PMCID:: PMC7522533

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Select item 71930436.

Microbial Nitrogen Metabolism in Chloraminated Drinking Water Reservoirs

Sarah C. Potgieter, Zihan Dai, Stephanus N. Venter, Makhosazana Sigudu, Ameet J. Pinto

mSphere. 2020 Mar-Apr; 5(2): e00274-20. Published online 2020 Apr 29. doi: 10.1128/mSphere.00274-20

PMCID:: PMC7193043

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Select item 54946307.

Enrichment and Physiological Characterization of a Cold-Adapted Nitrite-Oxidizing Nitrotoga sp. from an Eelgrass Sediment

Kento Ishii, Hirotsugu Fujitani, Kentaro Soh, Tatsunori Nakagawa, Reiji Takahashi, Satoshi Tsuneda

Appl Environ Microbiol. 2017 Jul 15; 83(14): e00549-17. Prepublished online 2017 May 12. Published online 2017 Jun 30. doi: 10.1128/AEM.00549-17

PMCID:: PMC5494630

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Select item 45687158.

Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genus Nitrospira

Hanna Koch, Sebastian Lücker, Mads Albertsen, Katharina Kitzinger, Craig Herbold, Eva Spieck, Per Halkjaer Nielsen, Michael Wagner, Holger Daims

Proc Natl Acad Sci U S A. 2015 Sep 8; 112(36): 11371–11376. Published online 2015 Aug 24. doi: 10.1073/pnas.1506533112

PMCID:: PMC4568715

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Select item 97651169.

Long-Read Metagenome-Assembled Genomes Improve Identification of Novel Complete Biosynthetic Gene Clusters in a Complex Microbial Activated Sludge Ecosystem

Roberto Sánchez-Navarro, Matin Nuhamunada, Omkar S. Mohite, Kenneth Wasmund, Mads Albertsen, Lone Gram, Per H. Nielsen, Tilmann Weber, Caitlin M. Singleton

mSystems. 2022 Nov-Dec; 7(6): e00632-22. Published online 2022 Nov 29. doi: 10.1128/msystems.00632-22

PMCID:: PMC9765116

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Select item 971404110.

Genomic profiling of Nitrospira species reveals ecological success of comammox Nitrospira

Alejandro Palomo, Arnaud Dechesne, Anders G. Pedersen, Barth F. Smets

Microbiome. 2022; 10: 204. Published online 2022 Nov 30. doi: 10.1186/s40168-022-01411-y

PMCID:: PMC9714041

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Select item 941884611.

Existence and distribution of novel phylotypes of Nitrospira in water columnsof the South China Sea

Wei Sun, Lijing Jiao, Jiapeng Wu, Jiaqi Ye, Mingken Wei, Yiguo Hong

iScience. 2022 Sep 16; 25(9): 104895. Published online 2022 Aug 8. doi: 10.1016/j.isci.2022.104895

PMCID:: PMC9418846

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Select item 938753012.

Integrating Genome-Resolved Metagenomics with Trait-Based Process Modeling to Determine Biokinetics of Distinct Nitrifying Communities within Activated Sludge

Pranav Sampara, Yaqian Luo, Xuan Lin, Ryan M. Ziels

Environ Sci Technol. 2022 Aug 16; 56(16): 11670–11682. Published online 2022 Aug 5. doi: 10.1021/acs.est.2c02081

PMCID:: PMC9387530

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Select item 930388213.

Biochemistry shapes growth kinetics of nitrifiers and defines their activity under specific environmental conditions

Eloi Martinez‐Rabert, Cindy J. Smith, William T. Sloan, Rebeca González‐Cabaleiro

Biotechnol Bioeng. 2022 May; 119(5): 1290–1300. Published online 2022 Feb 11. doi: 10.1002/bit.28045

PMCID:: PMC9303882

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Select item 840711314.

Activity-Based Cell Sorting Reveals Resistance of Functionally Degenerate Nitrospira during a Press Disturbance in Nitrifying Activated Sludge

Maxwell B. W. Madill, Yaqian Luo, Pranav Sampara, Ryan M. Ziels

mSystems. 2021 Jul-Aug; 6(4): e00712-21. Published online 2021 Jul 20. doi: 10.1128/mSystems.00712-21

PMCID:: PMC8407113

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Select item 811563215.

Metabolic versatility of the nitrite-oxidizing bacterium Nitrospira marina and its proteomic response to oxygen-limited conditions

Barbara Bayer, Mak A. Saito, Matthew R. McIlvin, Sebastian Lücker, Dawn M. Moran, Thomas S. Lankiewicz, Christopher L. Dupont, Alyson E. Santoro

ISME J. 2021 Apr; 15(4): 1025–1039. Published online 2020 Nov 23. doi: 10.1038/s41396-020-00828-3

PMCID:: PMC8115632

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Select item 753196216.

Use of Newly Designed Primers for Quantification of Complete Ammonia-Oxidizing (Comammox) Bacterial Clades and Strict Nitrite Oxidizers in the Genus Nitrospira

Ran Jiang, Jian-Gong Wang, Ting Zhu, Bin Zou, Dan-Qi Wang, Sung-Keun Rhee, Dong An, Zhi-Yuan Ji, Zhe-Xue Quan

Appl Environ Microbiol. 2020 Oct; 86(20): e01775-20. Prepublished online 2020 Aug 21. Published online 2020 Oct 1. doi: 10.1128/AEM.01775-20

PMCID:: PMC7531962

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Select item 778484617.

Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira

Anne Daebeler, Katharina Kitzinger, Hanna Koch, Craig W. Herbold, Michaela Steinfeder, Jasmin Schwarz, Thomas Zechmeister, Søren M. Karst, Mads Albertsen, Per H. Nielsen, Michael Wagner, Holger Daims

ISME J. 2020 Dec; 14(12): 2967–2979. Published online 2020 Jul 24. doi: 10.1038/s41396-020-0724-1