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Select item 103776281.

Voltage-Gated Proton Channels in the Tree of Life

Gustavo Chaves, Christophe Jardin, Christian Derst, Boris Musset

Biomolecules. 2023 Jul; 13(7): 1035. Published online 2023 Jun 24. doi: 10.3390/biom13071035

PMCID:: PMC10377628

Article PDF–3.9M

Select item 81323912.

Characterization of a novel type of carbonic anhydrase that acts without metal cofactors

Yoshihisa Hirakawa, Miki Senda, Kodai Fukuda, Hong Yang Yu, Masaki Ishida, Masafumi Taira, Kazushi Kinbara, Toshiya Senda

BMC Biol. 2021; 19: 105. Published online 2021 May 18. doi: 10.1186/s12915-021-01039-8

PMCID:: PMC8132391

Article PDF–2.5M

Select item 65591703.

The Known, the New, and a Possible Surprise: A Re-Evaluation of the Nucleomorph-Encoded Proteome of Cryptophytes

Stefan Zauner, Thomas Heimerl, Daniel Moog, Uwe G Maier

Genome Biol Evol. 2019 Jun; 11(6): 1618–1629. Published online 2019 May 24. doi: 10.1093/gbe/evz109

PMCID:: PMC6559170

Article PDF–430K

Select item 54559824.

Single Cell Transcriptomics, Mega-Phylogeny, and the Genetic Basis of Morphological Innovations in Rhizaria

Anders K. Krabberød, Russell J.S. Orr, Jon Bråte, Tom Kristensen, Kjell R. Bjørklund, Kamran Shalchian-Tabrizi

Mol Biol Evol. 2017 Jul; 34(7): 1557–1573. Published online 2017 Mar 1. doi: 10.1093/molbev/msx075

PMCID:: PMC5455982

Article PDF–5.2M

Select item 50291575.

Evolutionary distinctiveness of fatty acid and polyketide synthesis in eukaryotes

Gurjeet S Kohli, Uwe John, Frances M Van Dolah, Shauna A Murray

ISME J. 2016 Aug; 10(8): 1877–1890. Published online 2016 Jan 19. doi: 10.1038/ismej.2015.263

PMCID:: PMC5029157

Article PDF–2.8M

Select item 46413596.

Prospective function of FtsZ proteins in the secondary plastid of chlorarachniophyte algae

Yoshihisa Hirakawa, Ken-ichiro Ishida

BMC Plant Biol. 2015; 15: 276. Published online 2015 Nov 10. doi: 10.1186/s12870-015-0662-7

PMCID:: PMC4641359

Article PDF–3.3M

Select item 44940637.

Nucleomorph Genome Sequences of Two Chlorarachniophytes, Amorphochlora amoebiformis and Lotharella vacuolata

Shigekatsu Suzuki, Shu Shirato, Yoshihisa Hirakawa, Ken-Ichiro Ishida

Genome Biol Evol. 2015 Jun; 7(6): 1533–1545. Published online 2015 May 22. doi: 10.1093/gbe/evv096

PMCID:: PMC4494063

Article PDF–856K

Select item 32944428.

Genome-Based Reconstruction of the Protein Import Machinery in the Secondary Plastid of a Chlorarachniophyte Alga

Yoshihisa Hirakawa, Fabien Burki, Patrick J. Keeling

Eukaryot Cell. 2012 Mar; 11(3): 324–333. doi: 10.1128/EC.05264-11

PMCID:: PMC3294442

Article PDF–1.5M

Select item 30149349.

Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists

Fabien Burki, Alexander Kudryavtsev, Mikhail V Matz, Galina V Aglyamova, Simon Bulman, Mark Fiers, Patrick J Keeling, Jan Pawlowski

BMC Evol Biol. 2010; 10: 377. Published online 2010 Dec 2. doi: 10.1186/1471-2148-10-377

PMCID:: PMC3014934

Article PDF–810K

Select item 294105710.

Micro-algae come of age as a platform for recombinant protein production

Elizabeth Specht, Shigeki Miyake-Stoner, Stephen Mayfield

Biotechnol Lett. 2010; 32(10): 1373–1383. Published online 2010 Jun 17. doi: 10.1007/s10529-010-0326-5

PMCID:: PMC2941057

Article PDF–291K

Select item 272228011.

Protein targeting into secondary plastids of chlorarachniophytes

Yoshihisa Hirakawa, Kisaburo Nagamune, Ken-ichiro Ishida

Proc Natl Acad Sci U S A. 2009 Aug 4; 106(31): 12820–12825. Published online 2009 Jul 20. doi: 10.1073/pnas.0902578106

PMCID:: PMC2722280

Article PDF–1.8M

Select item 954819112.

Gene loss, pseudogenization, and independent genome reduction in non-photosynthetic species of Cryptomonas (Cryptophyceae) revealed by comparative nucleomorph genomics

Jong Im Kim, Goro Tanifuji, Minseok Jeong, Woongghi Shin, John M. Archibald

BMC Biol. 2022; 20: 227. Published online 2022 Oct 8. doi: 10.1186/s12915-022-01429-6

PMCID:: PMC9548191

Article PDF–1.9M

Select item 720060013.

Genetic tool development in marine protists: emerging model organisms for experimental cell biology

Drahomíra Faktorová, R. Ellen R. Nisbet, José A. Fernández Robledo, Elena Casacuberta, Lisa Sudek, Andrew E. Allen, Manuel Ares, Jr, Cristina Aresté, Cecilia Balestreri, Adrian C. Barbrook, Patrick Beardslee, Sara Bender, David S. Booth, François-Yves Bouget, Chris Bowler, Susana A. Breglia, Colin Brownlee, Gertraud Burger, Heriberto Cerutti, Rachele Cesaroni, Miguel A. Chiurillo, Thomas Clemente, Duncan B. Coles, Jackie L. Collier, Elizabeth C. Cooney, Kathryn Coyne, Roberto Docampo, Christopher L. Dupont, Virginia Edgcomb, Elin Einarsson, Pía A. Elustondo, Fernan Federici, Veronica Freire-Beneitez, Nastasia J. Freyria, Kodai Fukuda, Paulo A. García, Peter R. Girguis, Fatma Gomaa, Sebastian G. Gornik, Jian Guo, Vladimír Hampl, Yutaka Hanawa, Esteban R. Haro-Contreras, Elisabeth Hehenberger, Andrea Highfield, Yoshihisa Hirakawa, Amanda Hopes, Christopher J. Howe, Ian Hu, Jorge Ibañez, Nicholas A. T. Irwin, Yuu Ishii, Natalia Ewa Janowicz, Adam C. Jones, Ambar Kachale, Konomi Fujimura-Kamada, Binnypreet Kaur, Jonathan Z. Kaye, Eleanna Kazana, Patrick J. Keeling, Nicole King, Lawrence A. Klobutcher, Noelia Lander, Imen Lassadi, Zhuhong Li, Senjie Lin, Jean-Claude Lozano, Fulei Luan, Shinichiro Maruyama, Tamara Matute, Cristina Miceli, Jun Minagawa, Mark Moosburner, Sebastián R. Najle, Deepak Nanjappa, Isabel C. Nimmo, Luke Noble, Anna M. G. Novák Vanclová, Mariusz Nowacki, Isaac Nuñez, Arnab Pain, Angela Piersanti, Sandra Pucciarelli, Jan Pyrih, Joshua S. Rest, Mariana Rius, Deborah Robertson, Albane Ruaud, Iñaki Ruiz-Trillo, Monika A. Sigg, Pamela A. Silver, Claudio H. Slamovits, G. Jason Smith, Brittany N. Sprecher, Rowena Stern, Estienne C. Swart, Anastasios D. Tsaousis, Lev Tsypin, Aaron Turkewitz, Jernej Turnšek, Matus Valach, Valérie Vergé, Peter von Dassow, Tobias von der Haar, Ross F. Waller, Lu Wang, Xiaoxue Wen, Glen Wheeler, April Woods, Huan Zhang, Thomas Mock, Alexandra Z. Worden, Julius Lukeš

Nat Methods. 2020; 17(5): 481–494. Published online 2020 Apr 6. doi: 10.1038/s41592-020-0796-x