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PMC Full-Text Search Results

Items: 15

1.
Peptide-based functional annotation of carbohydrate-active enzymes by conserved unique peptide patterns (CUPP)
Kristian Barrett, Lene Lange
Biotechnol Biofuels. 2019; 12: 102. Published online 2019 Apr 30. doi: 10.1186/s13068-019-1436-5
PMCID:
PMC6489277
ArticlePDF–2.5M
2.
Two Duplicated Genes DDI2 and DDI3 in Budding Yeast Encode a Cyanamide Hydratase and Are Induced by Cyanamide
Jia Li, Michael Biss, Yu Fu, Xin Xu, Stanley A. Moore, Wei Xiao
J Biol Chem. 2015 May 15; 290(20): 12664–12675. Published online 2015 Apr 6. doi: 10.1074/jbc.M115.645408
PMCID:
PMC4432285
ArticlePDF–1.5M
3.
Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms
Arshan Nasir, Aisha Naeem, Muhammad Jawad Khan, Horacio D. Lopez-Nicora, Gustavo Caetano-Anollés
Genes (Basel) 2011 Dec; 2(4): 869–911. Published online 2011 Nov 8. doi: 10.3390/genes2040869
PMCID:
PMC3927607
ArticlePDF–2.0M
4.
Phylogenetic analysis of the SAP30 family of transcriptional regulators reveals functional divergence in the domain that binds the nuclear matrix
Keijo M Viiri, Taisto YK Heinonen, Markku Mäki, Olli Lohi
BMC Evol Biol. 2009; 9: 149. Published online 2009 Jun 30. doi: 10.1186/1471-2148-9-149
PMCID:
PMC2711940
ArticlePDF–1.7M
5.
Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies
Ursula Pieper, Ranyee Chiang, Jennifer J. Seffernick, Shoshana D. Brown, Margaret E. Glasner, Libusha Kelly, Narayanan Eswar, J. Michael Sauder, Jeffrey B. Bonanno, Subramanyam Swaminathan, Stephen K. Burley, Xiaojing Zheng, Mark R. Chance, Steven C. Almo, John A. Gerlt, Frank M. Raushel, Matthew P. Jacobson, Patricia C. Babbitt, Andrej Sali
J Struct Funct Genomics. 2009 Apr; 10(2): 107–125. Published online 2009 Feb 14. doi: 10.1007/s10969-008-9056-5
PMCID:
PMC2693957
ArticlePDF–716K
6.
Comparative EST analysis provides insights into the basal aquatic fungus Blastocladiella emersonii
Karina F Ribichich, Raphaela C Georg, Suely L Gomes
BMC Genomics. 2006; 7: 177. Published online 2006 Jul 12. doi: 10.1186/1471-2164-7-177
PMCID:
PMC1550239
ArticlePDF–543K
7.
A Bioinformatics Analysis Reveals Novel Pathogens as Molecular Mimicry Triggers of Systemic Sclerosis
Athanasios Gkoutzourelas, Maria Barmakoudi, Dimitrios P. Bogdanos
Mediterr J Rheumatol. 2020 Mar; 31(1): 50–70. Published online 2020 Mar 31. doi: 10.31138/mjr.31.1.50
PMCID:
PMC7219639
ArticlePDF–1.2M
8.
AS3MT-mediated tolerance to arsenic evolved by multiple independent horizontal gene transfers from bacteria to eukaryotes
Michael Palmgren, Karin Engström, Björn M. Hallström, Karin Wahlberg, Dan Ariel Søndergaard, Torbjörn Säll, Marie Vahter, Karin Broberg
PLoS One. 2017; 12(4): e0175422. Published online 2017 Apr 20. doi: 10.1371/journal.pone.0175422
PMCID:
PMC5398495
ArticlePDF–4.3M
9.
How genome complexity can explain the difficulty of aligning reads to genomes
Vinhthuy Phan, Shanshan Gao, Quang Tran, Nam S Vo
BMC Bioinformatics. 2015; 16(Suppl 17): S3. Published online 2015 Dec 7. doi: 10.1186/1471-2105-16-S17-S3
PMCID:
PMC4674900
ArticlePDF–2.1M
10.
Molecular and functional evolution of the fungal diterpene synthase genes
Marc JC Fischer, Camille Rustenhloz, Véronique Leh-Louis, Guy Perrière
BMC Microbiol. 2015; 15: 221. Published online 2015 Oct 19. doi: 10.1186/s12866-015-0564-8
PMCID:
PMC4617483
ArticlePDF–2.9M
11.
MeSH ORA framework: R/Bioconductor packages to support MeSH over-representation analysis
Koki Tsuyuzaki, Gota Morota, Manabu Ishii, Takeru Nakazato, Satoru Miyazaki, Itoshi Nikaido
BMC Bioinformatics. 2015; 16: 45. Published online 2015 Feb 15. doi: 10.1186/s12859-015-0453-z
PMCID:
PMC4343279
ArticlePDF–4.7M
12.
Comprehensive transcriptome analysis of early male and female Bactrocera jarvisi embryos
Jennifer L Morrow, Markus Riegler, A Stuart Gilchrist, Deborah CA Shearman, Marianne Frommer
BMC Genet. 2014; 15(Suppl 2): S7. Published online 2014 Dec 1. doi: 10.1186/1471-2156-15-S2-S7
PMCID:
PMC4255828
ArticlePDF–643K
13.
Functional Promiscuity of Homologues of the Bacterial ArsA ATPases
Rostislav Castillo, Milton H. Saier, Jr.
Int J Microbiol. 2010; 2010: 187373. Published online 2010 Oct 20. doi: 10.1155/2010/187373
PMCID:
PMC2963123
ArticlePDF–1.5M
14.
Phylogenetic analyses suggest multiple changes of substrate specificity within the Glycosyl hydrolase 20 family
Jari Intra, Giulio Pavesi, David S Horner
BMC Evol Biol. 2008; 8: 214. Published online 2008 Jul 22. doi: 10.1186/1471-2148-8-214
PMCID:
PMC2492878
ArticlePDF–1.5M
15.
Drawing the tree of eukaryotic life based on the analysis of 2,269 manually annotated myosins from 328 species
Florian Odronitz, Martin Kollmar
Genome Biol. 2007; 8(9): R196. Published online 2007 Sep 18. doi: 10.1186/gb-2007-8-9-r196
PMCID:
PMC2375034
ArticlePDF–1.0M

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