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Select item 97036921.

MP4: a machine learning based classification tool for prediction and functional annotation of pathogenic proteins from metagenomic and genomic datasets

Ankit Gupta, Aditya S. Malwe, Gopal N. Srivastava, Parikshit Thoudam, Keshav Hibare, Vineet K. Sharma

BMC Bioinformatics. 2022; 23: 507. Published online 2022 Nov 28. doi: 10.1186/s12859-022-05061-7

PMCID:: PMC9703692

Article PDF–1.1M

Select item 91001462.

Carbohydrate-Binding Modules of Potential Resources: Occurrence in Nature, Function, and Application in Fiber Recognition and Treatment

Yena Liu, Peipei Wang, Jing Tian, Farzad Seidi, Jiaqi Guo, Wenyuan Zhu, Huining Xiao, Junlong Song

Polymers (Basel) 2022 May; 14(9): 1806. Published online 2022 Apr 28. doi: 10.3390/polym14091806

PMCID:: PMC9100146

Article PDF–2.8M

Select item 62835983.

Metabolic models and gene essentiality data reveal essential and conserved metabolism in prokaryotes

Joana C. Xavier, Kiran Raosaheb Patil, Isabel Rocha

PLoS Comput Biol. 2018 Nov; 14(11): e1006556. Published online 2018 Nov 16. doi: 10.1371/journal.pcbi.1006556

PMCID:: PMC6283598

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Select item 52065364.

Conservation of coevolving protein interfaces bridges prokaryote–eukaryote homologies in the twilight zone

Juan Rodriguez-Rivas, Simone Marsili, David Juan, Alfonso Valencia

Proc Natl Acad Sci U S A. 2016 Dec 27; 113(52): 15018–15023. Published online 2016 Dec 13. doi: 10.1073/pnas.1611861114

PMCID:: PMC5206536

Article PDF–1.0M

Select item 48796655.

Abundance and Temperature Dependency of Protein-Protein Interaction Revealed by Interface Structure Analysis and Stability Evolution

Yi-Ming He, Bin-Guang Ma

Sci Rep. 2016; 6: 26737. Published online 2016 May 25. doi: 10.1038/srep26737

PMCID:: PMC4879665

Article PDF–689K

Select item 42995206.

Genome-wide gene order distances support clustering the gram-positive bacteria

Christopher H. House, Matteo Pellegrini, Sorel T. Fitz-Gibbon

Front Microbiol. 2014; 5: 785. Published online 2015 Jan 20. doi: 10.3389/fmicb.2014.00785

PMCID:: PMC4299520

Article PDF–8.7M

Select item 42391777.

Structural characterization of the putative ABC–type 2 transporter from Thermotoga maritima MSB8

Ekaterina V. Filippova, Karolina L. Tkaczuk, Maksymilian Chruszcz, Xiaohui Xu, Alexei Savchenko, Aled Edwards, Wladek Minor

J Struct Funct Genomics. Author manuscript; available in PMC 2015 Dec 1.

Published in final edited form as: J Struct Funct Genomics. 2014 Dec; 15(4): 215–222. Published online 2014 Oct 12. doi: 10.1007/s10969-014-9189-7

PMCID:: PMC4239177

Article PDF–709K

Select item 38281818.

Improved Activity of a Thermophilic Cellulase, Cel5A, from Thermotoga maritima on Ionic Liquid Pretreated Switchgrass

Zhiwei Chen, Jose H. Pereira, Hanbin Liu, Huu M. Tran, Nathan S. Y. Hsu, Dean Dibble, Seema Singh, Paul D. Adams, Rajat Sapra, Masood Z. Hadi, Blake A. Simmons, Kenneth L. Sale

PLoS One. 2013; 8(11): e79725. Published online 2013 Nov 14. doi: 10.1371/journal.pone.0079725

PMCID:: PMC3828181

Article PDF–368K

Select item 29629149.

In Silico Characterization of Pectate Lyase Protein Sequences from Different Source Organisms

Amit Kumar Dubey, Sangeeta Yadav, Manish Kumar, Vinay Kumar Singh, Bijaya Ketan Sarangi, Dinesh Yadav

Enzyme Res. 2010; 2010: 950230. Published online 2010 Sep 19. doi: 10.4061/2010/950230

PMCID:: PMC2962914

Article PDF–4.6M

Select item 261419610.

Minimum Contradiction Matrices in Whole Genome Phylogenies

Marc Thuillard

Evol Bioinform Online. 2008; 4: 237–247. Published online 2008 Jul 21. doi: 10.4137/ebo.s909

PMCID:: PMC2614196

Article PDF–498K

Select item 204869711.

Molecular Architecture of Strictosidine Glucosidase: The Gateway to the Biosynthesis of the Monoterpenoid Indole Alkaloid Family

Leif Barleben, Santosh Panjikar, Martin Ruppert, Juergen Koepke, Joachim Stöckigt

Plant Cell. 2007 Sep; 19(9): 2886–2897. doi: 10.1105/tpc.106.045682

PMCID:: PMC2048697

Article PDF–1.1M

Select item 138843912.

Two Extremely Thermostable Xylanases of the Hyperthermophilic Bacterium Thermotoga maritima MSB8

C. Winterhalter, W. Liebl

Appl Environ Microbiol. 1995 May; 61(5): 1810–1815. doi: 10.1128/aem.61.5.1810-1815.1995

PMCID:: PMC1388439

Summary PDF–280K

Select item 1032590913.

Single-stranded DNA recruitment mechanism in replication origin unwinding by DnaA initiator protein and HU, an evolutionary ubiquitous nucleoid protein

Ryusei Yoshida, Shogo Ozaki, Hironori Kawakami, Tsutomu Katayama

Nucleic Acids Res. 2023 Jul 7; 51(12): 6286–6306. Published online 2023 May 13. doi: 10.1093/nar/gkad389

PMCID:: PMC10325909

Article PDF–2.4M

Select item 889682614.

Cellular assays identify barriers impeding iron-sulfur enzyme activity in a non-native prokaryotic host

Francesca D'Angelo, Elena Fernández-Fueyo, Pierre Simon Garcia, Helena Shomar, Martin Pelosse, Rita Rebelo Manuel, Ferhat Büke, Siyi Liu, Niels van den Broek, Nicolas Duraffourg, Carol de Ram, Martin Pabst, Emmanuelle Bouveret, Simonetta Gribaldo, Béatrice Py, Sandrine Ollagnier de Choudens, Frédéric Barras, Gregory Bokinsky

eLife. 2022; 11: e70936. Published online 2022 Mar 4. doi: 10.7554/eLife.70936

PMCID:: PMC8896826

Article PDF–2.7M

Select item 793812215.

Information theoretic perspective on genome clustering

Alaguraj Veluchamy, Preeti Mehta, K.V. Srividhya, Hirendra Vikram, M.K. Govind, Ramneek Gupta, Abdul Aziz Bin Dukhyil, Raed Abdullah Alharbi, Saleh Abdullah Aloyuni, Mohamed M. Hassan, S. Krishnaswamy

Saudi J Biol Sci. 2021 Mar; 28(3): 1867–1889. Published online 2020 Dec 31. doi: 10.1016/j.sjbs.2020.12.039