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Select item 84937301.

Mycobacterium leprae diversity and population dynamics in medieval Europe from novel ancient genomes

Saskia Pfrengle, Judith Neukamm, Meriam Guellil, Marcel Keller, Martyna Molak, Charlotte Avanzi, Alena Kushniarevich, Núria Montes, Gunnar U. Neumann, Ella Reiter, Rezeda I. Tukhbatova, Nataliya Y. Berezina, Alexandra P. Buzhilova, Dmitry S. Korobov, Stian Suppersberger Hamre, Vitor M. J. Matos, Maria T. Ferreira, Laura González-Garrido, Sofia N. Wasterlain, Célia Lopes, Ana Luisa Santos, Nathalie Antunes-Ferreira, Vitória Duarte, Ana Maria Silva, Linda Melo, Natasa Sarkic, Lehti Saag, Kristiina Tambets, Philippe Busso, Stewart T. Cole, Alexei Avlasovich, Charlotte A. Roberts, Alison Sheridan, Craig Cessford, John Robb, Johannes Krause, Christiana L. Scheib, Sarah A. Inskip, Verena J. Schuenemann

BMC Biol. 2021; 19: 220. Published online 2021 Oct 5. doi: 10.1186/s12915-021-01120-2

PMCID:: PMC8493730

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Select item 65088712.

Dual RNA-Seq of Human Leprosy Lesions Identifies Bacterial Determinants Linked to Host Immune Response

Dennis J. Montoya, Priscila Andrade, Bruno J.A. Silva, Rosane M.B. Teles, Feiyang Ma, Bryan Bryson, Saheli Sadanand, Teia Noel, Jing Lu, Euzenir Sarno, Kristine B. Arnvig, Douglas Young, Ramanuj Lahiri, Diana L. Williams, Sarah Fortune, Barry R. Bloom, Matteo Pellegrini, Robert L. Modlin

Cell Rep. Author manuscript; available in PMC 2019 May 9.

Published in final edited form as: Cell Rep. 2019 Mar 26; 26(13): 3574–3585.e3. doi: 10.1016/j.celrep.2019.02.109

PMCID:: PMC6508871

Article PDF–1.8M

Select item 61528623.

Evaluation of antigen-specific immune responses for leprosy diagnosis in a hyperendemic area in China

Xiaohua Chen, Yuan-Gang You, You-Hua Yuan, Lian Chao Yuan, Ying Zhang, Wen Yan

PLoS Negl Trop Dis. 2018 Sep; 12(9): e0006777. Published online 2018 Sep 24. doi: 10.1371/journal.pntd.0006777

PMCID:: PMC6152862

Article PDF–2.8M

Select item 39588234.

Exploring the Molecular Basis for Selective Binding of Homoserine Dehydrogenase from Mycobacterium leprae TN toward Inhibitors: A Virtual Screening Study

Dongling Zhan, Dongmei Wang, Weihong Min, Weiwei Han

Int J Mol Sci. 2014 Feb; 15(2): 1826–1841. Published online 2014 Jan 24. doi: 10.3390/ijms15021826

PMCID:: PMC3958823

Article PDF–1.2M

Select item 37924075.

Overexpression of chloroplast NADPH-dependent thioredoxin reductase in Arabidopsis enhances leaf growth and elucidates in vivo function of reductase and thioredoxin domains

Jouni Toivola, Lauri Nikkanen, Käthe M. Dahlström, Tiina A. Salminen, Anna Lepistö, hb Florence Vignols, Eevi Rintamäki

Front Plant Sci. 2013; 4: 389. Published online 2013 Oct 8. doi: 10.3389/fpls.2013.00389

PMCID:: PMC3792407

Article PDF–3.7M

Select item 37283036.

The Embedding Problem for Markov Models of Nucleotide Substitution

Klara L. Verbyla, Von Bing Yap, Anuj Pahwa, Yunli Shao, Gavin A. Huttley

PLoS One. 2013; 8(7): e69187. Published online 2013 Jul 30. doi: 10.1371/journal.pone.0069187

PMCID:: PMC3728303

Article PDF–501K

Select item 33880127.

Comparative analysis of mycobacterium and related actinomycetes yields insight into the evolution of mycobacterium tuberculosis pathogenesis

Abigail Manson McGuire, Brian Weiner, Sang Tae Park, Ilan Wapinski, Sahadevan Raman, Gregory Dolganov, Matthew Peterson, Robert Riley, Jeremy Zucker, Thomas Abeel, Jared White, Peter Sisk, Christian Stolte, Mike Koehrsen, Robert T Yamamoto, Milena Iacobelli-Martinez, Matthew J Kidd, Andreia M Maer, Gary K Schoolnik, Aviv Regev, James Galagan

BMC Genomics. 2012; 13: 120. Published online 2012 Mar 28. doi: 10.1186/1471-2164-13-120

PMCID:: PMC3388012

Article PDF–3.6M

Select item 30935448.

Phylogenetic Distribution and Evolutionary History of Bacterial DEAD-Box Proteins

Varinia López-Ramírez, Luis D. Alcaraz, Gabriel Moreno-Hagelsieb, Gabriela Olmedo-Álvarez

J Mol Evol. 2011; 72(4): 413–431. Published online 2011 Mar 25. doi: 10.1007/s00239-011-9441-8

PMCID:: PMC3093544

Article PDF–9.0M

Select item 29631239.

Functional Promiscuity of Homologues of the Bacterial ArsA ATPases

Rostislav Castillo, Milton H. Saier, Jr.

Int J Microbiol. 2010; 2010: 187373. Published online 2010 Oct 20. doi: 10.1155/2010/187373

PMCID:: PMC2963123

Article PDF–1.5M

Select item 261419610.

Minimum Contradiction Matrices in Whole Genome Phylogenies

Marc Thuillard

Evol Bioinform Online. 2008; 4: 237–247. Published online 2008 Jul 21. doi: 10.4137/ebo.s909

PMCID:: PMC2614196

Article PDF–498K

Select item 828081911.

Redox homeostasis in Mycobacterium tuberculosis is modulated by a novel actinomycete‐specific transcription factor

Mehak Zahoor Khan, Biplab Singha, Mohammad Farhan Ali, Khushman Taunk, Srikanth Rapole, Samudrala Gourinath, Vinay Kumar Nandicoori

EMBO J. 2021 Jul 15; 40(14): e106111. Published online 2021 May 21. doi: 10.15252/embj.2020106111

PMCID:: PMC8280819

Article PDF–4.1M

Select item 793812212.

Information theoretic perspective on genome clustering

Alaguraj Veluchamy, Preeti Mehta, K.V. Srividhya, Hirendra Vikram, M.K. Govind, Ramneek Gupta, Abdul Aziz Bin Dukhyil, Raed Abdullah Alharbi, Saleh Abdullah Aloyuni, Mohamed M. Hassan, S. Krishnaswamy

Saudi J Biol Sci. 2021 Mar; 28(3): 1867–1889. Published online 2020 Dec 31. doi: 10.1016/j.sjbs.2020.12.039