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Select item 108628571.

RNA3DB: A structurally-dissimilar dataset split for training and benchmarking deep learning models for RNA structure prediction

Marcell Szikszai, Marcin Magnus, Siddhant Sanghi, Sachin Kadyan, Nazim Bouatta, Elena Rivas

Version 3. bioRxiv. Preprint. NaN NaN [revised 2024 Mar 11]. doi: 10.1101/2024.01.30.578025

Published in:: J Mol Biol. 2024 Mar 27 : 168552.

PMCID:: PMC10862857

Article PDF–9.8M

Select item 108190662.

Statistical Analysis of the Role of Cavity Flexibility in Thermostability of Proteins

So Yeon Hong, Jihyun Yoon, Young Joo An, Siseon Lee, Haeng-Geun Cha, Ashutosh Pandey, Young Je Yoo, Jeong Chan Joo

Polymers (Basel) 2024 Jan; 16(2): 291. Published online 2024 Jan 21. doi: 10.3390/polym16020291

PMCID:: PMC10819066

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Select item 104279853.

Structural aspects of enzymes involved in prokaryotic Gram-positive heme biosynthesis

Nikolaus Falb, Gaurav Patil, Paul G. Furtmüller, Thomas Gabler, Stefan Hofbauer

Comput Struct Biotechnol J. 2023; 21: 3933–3945. Published online 2023 Jul 24. doi: 10.1016/j.csbj.2023.07.024

PMCID:: PMC10427985

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Select item 103837224.

Direct Biocatalytic Processes for CO₂ Capture as a Green Tool to Produce Value-Added Chemicals

Rocio Villa, Susana Nieto, Antonio Donaire, Pedro Lozano

Molecules. 2023 Jul; 28(14): 5520. Published online 2023 Jul 19. doi: 10.3390/molecules28145520

PMCID:: PMC10383722

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Select item 96016135.

Development of a Fluorescence Polarization Assay for Multi-Determination of 10 Aminoglycosides in Pork Muscle Sample Based on Ribosomal Protein S12 and Studying Its Recognition Mechanism

Wanqiu Xia, Lei Zhang, Jianping Wang

Foods. 2022 Oct; 11(20): 3196. Published online 2022 Oct 13. doi: 10.3390/foods11203196

PMCID:: PMC9601613

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Select item 84695026.

Comparative Genomic Analysis of the DUF34 Protein Family Suggests Role as a Metal Ion Chaperone or Insertase

Colbie J. Reed, Geoffrey Hutinet, Valérie de Crécy-Lagard

Biomolecules. 2021 Sep; 11(9): 1282. Published online 2021 Aug 27. doi: 10.3390/biom11091282

PMCID:: PMC8469502

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Select item 80247097.

DNA ligase I fidelity mediates the mutagenic ligation of pol β oxidized and mismatch nucleotide insertion products in base excision repair

Pradnya Kamble, Kalen Hall, Mahesh Chandak, Qun Tang, Melike Çağlayan

J Biol Chem. 2021 Jan-Jun; 296: 100427. Published online 2021 Feb 16. doi: 10.1016/j.jbc.2021.100427

PMCID:: PMC8024709

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Select item 77101788.

Bioinformatic analysis of the pathogenic mechanism of talaromyces marneffei infection

Jiemei Cen, Jiarui Chen, Ye Qiu, Wen Zeng, Jianquan Zhang

Medicine (Baltimore) 2020 Nov 25; 99(48): e23409. Published online 2020 Nov 25. doi: 10.1097/MD.0000000000023409

PMCID:: PMC7710178

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Select item 73854559.

Novel thermostable lipase produced by a thermo-halophilic bacterium that catalyses hydrolytic and transesterification reactions

Febriani, Naiwatul Aura, Pati Kemala, Nurdin Saidi, Teuku M. Iqbalsyah

Heliyon. 2020 Jul; 6(7): e04520. Published online 2020 Jul 24. doi: 10.1016/j.heliyon.2020.e04520

PMCID:: PMC7385455

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Select item 652064610.

Prospects for the Use of Whey for Polyhydroxyalkanoate (PHA) Production

Tiago M. M. M. Amaro, Davide Rosa, Giuseppe Comi, Lucilla Iacumin

Front Microbiol. 2019; 10: 992. Published online 2019 May 9. doi: 10.3389/fmicb.2019.00992

PMCID:: PMC6520646

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Select item 621844111.

Methylenetetrahydrofolate reductase and psychiatric diseases

Lin Wan, Yuhong Li, Zhengrong Zhang, Zuoli Sun, Yi He, Rena Li

Transl Psychiatry. 2018; 8: 242. Published online 2018 Nov 5. doi: 10.1038/s41398-018-0276-6

PMCID:: PMC6218441

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Select item 572286912.

Structural insight into a CE15 esterase from the marine bacterial metagenome

Concetta De Santi, Osman ABSM Gani, Ronny Helland, Adele Williamson

Sci Rep. 2017; 7: 17278. Published online 2017 Dec 8. doi: 10.1038/s41598-017-17677-4

PMCID:: PMC5722869

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Select item 520653613.

Conservation of coevolving protein interfaces bridges prokaryote–eukaryote homologies in the twilight zone

Juan Rodriguez-Rivas, Simone Marsili, David Juan, Alfonso Valencia

Proc Natl Acad Sci U S A. 2016 Dec 27; 113(52): 15018–15023. Published online 2016 Dec 13. doi: 10.1073/pnas.1611861114

PMCID:: PMC5206536

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Select item 487966514.

Abundance and Temperature Dependency of Protein-Protein Interaction Revealed by Interface Structure Analysis and Stability Evolution

Yi-Ming He, Bin-Guang Ma

Sci Rep. 2016; 6: 26737. Published online 2016 May 25. doi: 10.1038/srep26737

PMCID:: PMC4879665

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Select item 478700115.

Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data

Melanie Schirmer, Rosalinda D’Amore, Umer Z. Ijaz, Neil Hall, Christopher Quince

BMC Bioinformatics. 2016; 17: 125. Published online 2016 Mar 11. doi: 10.1186/s12859-016-0976-y

PMCID:: PMC4787001

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Select item 475461716.

Role of Protein Phosphorylation in the Regulation of Cell Cycle and DNA-Related Processes in Bacteria

Transito Garcia-Garcia, Sandrine Poncet, Abderahmane Derouiche, Lei Shi, Ivan Mijakovic, Marie-Françoise Noirot-Gros

Front Microbiol. 2016; 7: 184. Published online 2016 Feb 16. doi: 10.3389/fmicb.2016.00184

PMCID:: PMC4754617

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Select item 428648017.

Structural principles of CRISPR RNA processing

Hong Li

Structure. Author manuscript; available in PMC 2016 Jan 6.

Published in final edited form as: Structure. 2015 Jan 6; 23(1): 13–20. Published online 2014 Nov 26. doi: 10.1016/j.str.2014.10.006

PMCID:: PMC4286480

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Select item 775471418.

Crystal structure of Legionella pneumophila dephospho-CoA kinase reveals a non-canonical conformation of P-loop

Xiaojian Gong, Xiaofang Chen, Dongmin Yu, Nannan Zhang, Zhongliang Zhu, Liwen Niu, Yuxin Mao, Honghua Ge

J Struct Biol. Author manuscript; available in PMC 2020 Dec 22.

Published in final edited form as: J Struct Biol. 2014 Dec; 188(3): 233–239. Published online 2014 Oct 25. doi: 10.1016/j.jsb.2014.10.008

PMCID:: PMC7754714

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Select item 423917719.

Structural characterization of the putative ABC–type 2 transporter from Thermotoga maritima MSB8

Ekaterina V. Filippova, Karolina L. Tkaczuk, Maksymilian Chruszcz, Xiaohui Xu, Alexei Savchenko, Aled Edwards, Wladek Minor

J Struct Funct Genomics. Author manuscript; available in PMC 2015 Dec 1.

Published in final edited form as: J Struct Funct Genomics. 2014 Dec; 15(4): 215–222. Published online 2014 Oct 12. doi: 10.1007/s10969-014-9189-7

PMCID:: PMC4239177

Article PDF–709K

Select item 404828620.

Archaeal Tuc1/Ncs6 Homolog Required for Wobble Uridine tRNA Thiolation Is Associated with Ubiquitin-Proteasome, Translation, and RNA Processing System Homologs

Nikita E. Chavarria, Sungmin Hwang, Shiyun Cao, Xian Fu, Mary Holman, Dina Elbanna, Suzanne Rodriguez, Deanna Arrington, Markus Englert, Sivakumar Uthandi, Dieter Söll, Julie A. Maupin-Furlow

PLoS One. 2014; 9(6): e99104. Published online 2014 Jun 6. doi: 10.1371/journal.pone.0099104

Correction in:: PLoS One. 2014; 9(12): e115719.

PMCID:: PMC4048286

Article PDF–2.0M

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