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Select item 104580141.

Caenorhabditis elegans as an In Vivo Model for the Discovery and Development of Natural Plant-Based Antimicrobial Compounds

Samah H. O. Zarroug, Juhaina S. Bajaman, Fatheia N. Hamza, Rimah A. Saleem, Hana K. Abdalla

Pharmaceuticals (Basel) 2023 Aug; 16(8): 1070. Published online 2023 Jul 27. doi: 10.3390/ph16081070

PMCID:: PMC10458014

Article PDF–833K

Select item 57532772.

PRODORIC2: the bacterial gene regulation database in 2018

Denitsa Eckweiler, Christian-Alexander Dudek, Juliane Hartlich, David Brötje, Dieter Jahn

Nucleic Acids Res. 2018 Jan 4; 46(Database issue): D320–D326. Published online 2017 Nov 9. doi: 10.1093/nar/gkx1091

PMCID:: PMC5753277

Article PDF–2.2M

Select item 58323323.

How Type II CRISPR-Cas establish immunity through Cas1-Cas2 mediated spacer integration

Yibei Xiao, Sherwin Ng, Ki Hyun Nam, Ailong Ke

Nature. Author manuscript; available in PMC 2018 Mar 4.

Published in final edited form as: Nature. 2017 Oct 5; 550(7674): 137–141. Published online 2017 Sep 4. doi: 10.1038/nature24020

PMCID:: PMC5832332

Article PDF–5.7M

Select item 44098484.

Making proteomics data accessible and reusable: Current state of proteomics databases and repositories

Yasset Perez-Riverol, Emanuele Alpi, Rui Wang, Henning Hermjakob, Juan Antonio Vizcaíno

Proteomics. 2015 Mar; 15(5-6): 930–950. Published online 2015 Mar 12. doi: 10.1002/pmic.201400302

PMCID:: PMC4409848

Article PDF–449K

Select item 39539945.

Late Breaking Abstracts: Presented at the American Society of Gene & Cell Therapy's 16^thAnnual Meeting, May 15–18, 2013, Salt Lake City, Utah

Mol Ther. 2013 Sep; 21(9): e1–e46. Published online 2013 Sep 6. doi: 10.1038/mt.2013.140

PMCID:: PMC3953994

Article PDF–334K

Select item 31147416.

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

Marcus Lechner, Sven Findeiß, Lydia Steiner, Manja Marz, Peter F Stadler, Sonja J Prohaska

BMC Bioinformatics. 2011; 12: 124. Published online 2011 Apr 28. doi: 10.1186/1471-2105-12-124

PMCID:: PMC3114741

Article PDF–473K

Select item 20753657.

Identification of Prophages in Bacterial Genomes by Dinucleotide Relative Abundance Difference

K. V. Srividhya, V. Alaguraj, G. Poornima, Dinesh Kumar, G. P. Singh, L. Raghavenderan, A. V. S. K. Mohan Katta, Preeti Mehta, S. Krishnaswamy

PLoS One. 2007; 2(11): e1193. Published online 2007 Nov 21. doi: 10.1371/journal.pone.0001193

PMCID:: PMC2075365

Article PDF–295K

Select item 18852128.

Pathogen Proteins Eliciting Antibodies Do Not Share Epitopes with Host Proteins: A Bioinformatics Approach

Isaac Amela, Juan Cedano, Enrique Querol

PLoS One. 2007; 2(6): e512. Published online 2007 Jun 6. doi: 10.1371/journal.pone.0000512

PMCID:: PMC1885212

Article PDF–354K

Select item 16797679.

Dynamic state of DNA topology is essential for genome condensation in bacteria

Ryosuke L Ohniwa, Kazuya Morikawa, Joongbaek Kim, Toshiko Ohta, Akira Ishihama, Chieko Wada, Kunio Takeyasu

EMBO J. 2006 Nov 29; 25(23): 5591–5602. Published online 2006 Nov 9. doi: 10.1038/sj.emboj.7601414

PMCID:: PMC1679767

Article PDF–603K

Select item 286042610.

The theoretical basis of universal identification systems for bacteria and viruses

S. Chumakov, C. Belapurkar, C. Putonti, T.-B. Li, B.M. Pettitt, G.E. Fox, R.C. Willson, Yu. Fofanov

J Biol Phys Chem. Author manuscript; available in PMC 2010 Apr 27.

Published in final edited form as: J Biol Phys Chem. 2005 Dec 1; 5(4): 121–128. doi: 10.4024/40501.jbpc.05.04

PMCID:: PMC2860426

Article PDF–1.6M

Select item 126270911.

Diversity in domain architectures of Ser/Thr kinases and their homologues in prokaryotes

A Krupa, N Srinivasan

BMC Genomics. 2005; 6: 129. Published online 2005 Sep 19. doi: 10.1186/1471-2164-6-129

PMCID:: PMC1262709

Article PDF–746K

Select item 55065512.

The PECACE domain: a new family of enzymes with potential peptidoglycan cleavage activity in Gram-positive bacteria

Estelle Pagliero, Otto Dideberg, Thierry Vernet, Anne Marie Di Guilmi

BMC Genomics. 2005; 6: 19. Published online 2005 Feb 17. doi: 10.1186/1471-2164-6-19

PMCID:: PMC550655

Article PDF–379K

Select item 971954313.

PHEVIR: an artificial intelligence algorithm that predicts the molecular role of pathogens in complex human diseases

Hongyi Zhou, Courtney Astore, Jeffrey Skolnick

Sci Rep. 2022; 12: 20889. Published online 2022 Dec 3. doi: 10.1038/s41598-022-25412-x

PMCID:: PMC9719543

Article PDF–1.9M

Select item 952576314.

Advances in CRISPR/Cas9

Youmin Zhu

Biomed Res Int. 2022; 2022: 9978571. Published online 2022 Sep 23. doi: 10.1155/2022/9978571

PMCID:: PMC9525763

Article PDF–630K

Select item 761257015.

Spacer prioritization in CRISPR-Cas9 immunity is enabled by the leader RNA

Chunyu Liao, Sahil Sharma, Sarah L. Svensson, Anuja Kibe, Zasha Weinberg, Omer S. Alkhnbashi, Thorsten Bischler, Rolf Backofen, Neva Caliskan, Cynthia M. Sharma, Chase L. Beisel

Nat Microbiol. Author manuscript; available in PMC 2022 Sep 21.

Published in final edited form as: Nat Microbiol. 2022 Apr; 7(4): 530–541. Published online 2022 Mar 21. doi: 10.1038/s41564-022-01074-3

PMCID:: PMC7612570

Article PDF–5.4M

Select item 790367816.

Strain heterogeneity, cooccurrence network, taxonomic composition and functional profile of the healthy ocular surface microbiome

Yutong Kang, Shudan Lin, Xueli Ma, Yanlin Che, Yiju Chen, Tian Wan, Die Zhang, Jiao Shao, Jie Xu, Yi Xu, Yongliang Lou, Meiqin Zheng

Eye Vis (Lond) 2021; 8: 6. Published online 2021 Feb 24. doi: 10.1186/s40662-021-00228-4

PMCID:: PMC7903678

Article PDF–2.2M

Select item 793812217.

Information theoretic perspective on genome clustering

Alaguraj Veluchamy, Preeti Mehta, K.V. Srividhya, Hirendra Vikram, M.K. Govind, Ramneek Gupta, Abdul Aziz Bin Dukhyil, Raed Abdullah Alharbi, Saleh Abdullah Aloyuni, Mohamed M. Hassan, S. Krishnaswamy

Saudi J Biol Sci. 2021 Mar; 28(3): 1867–1889. Published online 2020 Dec 31. doi: 10.1016/j.sjbs.2020.12.039

PMCID:: PMC7938122

Article PDF–1.5M

Select item 695179718.

Group A Streptococcal S Protein Utilizes Red Blood Cells as Immune Camouflage and Is a Critical Determinant for Immune Evasion

Igor H. Wierzbicki, Anaamika Campeau, Diana Dehaini, Maya Holay, Xiaoli Wei, Trever Greene, Man Ying, Jenna S. Sands, Anne Lamsa, Elina Zuniga, Kit Pogliano, Ronnie H. Fang, Christopher N. LaRock, Liangfang Zhang, David J. Gonzalez

Cell Rep. Author manuscript; available in PMC 2020 Jan 9.

Published in final edited form as: Cell Rep. 2019 Dec 3; 29(10): 2979–2989.e15. doi: 10.1016/j.celrep.2019.11.001

PMCID:: PMC6951797

Article PDF–1.9M

Select item 579665919.

The Membrane Attack Complex/Perforin (MACPF) Superfamily

Gabriel Moreno-Hagelsieb, Bennett Vitug, Arturo Medrano-Soto, Milton H. Saier, Jr.

J Mol Microbiol Biotechnol. Author manuscript; available in PMC 2018 Nov 17.

Published in final edited form as: J Mol Microbiol Biotechnol. 2017; 27(4): 252–267. Published online 2017 Nov 17. doi: 10.1159/000481286

PMCID:: PMC5796659

Article PDF–1.1M

Select item 566005720.

Genomic Comparison among Lethal Invasive Strains of Streptococcus pyogenes Serotype M1

Gabriel R. Fernandes, Aulus E. A. D. Barbosa, Renan N. Almeida, Fabíola F. dos S. Castro, Marina de C. P. da Ponte, Celio Faria-Junior, Fernanda M. P. Müller, Antônio A. B. Viana, Dario Grattapaglia, Octavio L. Franco, Sérgio A. Alencar, Simoni C. Dias

Front Microbiol. 2017; 8: 1993. Published online 2017 Oct 23. doi: 10.3389/fmicb.2017.01993