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Select item 72310391.

Evolution of Predicted Acid Resistance Mechanisms in the Extremely Acidophilic Leptospirillum Genus

Eva Vergara, Gonzalo Neira, Carolina González, Diego Cortez, Mark Dopson, David S. Holmes

Genes (Basel) 2020 Apr; 11(4): 389. Published online 2020 Apr 3. doi: 10.3390/genes11040389

PMCID:: PMC7231039

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Select item 60850012.

Biomarker panels for characterizing microbial community biofilm formation as composite molecular process

Magnus Bosse, Alexander Heuwieser, Andreas Heinzel, Arno Lukas, Guilherme Oliveira, Bernd Mayer

PLoS One. 2018; 13(8): e0202032. Published online 2018 Aug 9. doi: 10.1371/journal.pone.0202032

PMCID:: PMC6085001

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Select item 39892653.

Nickel-Resistance Determinants in Acidiphilium sp. PM Identified by Genome-Wide Functional Screening

Patxi San Martin-Uriz, Salvador Mirete, Pedro J. Alcolea, Manuel J. Gomez, Ricardo Amils, Jose E. Gonzalez-Pastor

PLoS One. 2014; 9(4): e95041. Published online 2014 Apr 16. doi: 10.1371/journal.pone.0095041

PMCID:: PMC3989265

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Select item 34165164.

Complete Genome Sequence of Leptospirillum ferrooxidans Strain C2-3, Isolated from a Fresh Volcanic Ash Deposit on the Island of Miyake, Japan

Reiko Fujimura, Yoshinori Sato, Tomoyasu Nishizawa, Kenshiro Oshima, Seok-Won Kim, Masahira Hattori, Takashi Kamijo, Hiroyuki Ohta

J Bacteriol. 2012 Aug; 194(15): 4122–4123. doi: 10.1128/JB.00696-12

PMCID:: PMC3416516

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Select item 34245495.

Sequence, structure and functional diversity of PD-(D/E)XK phosphodiesterase superfamily

Kamil Steczkiewicz, Anna Muszewska, Lukasz Knizewski, Leszek Rychlewski, Krzysztof Ginalski

Nucleic Acids Res. 2012 Aug; 40(15): 7016–7045. Published online 2012 May 24. doi: 10.1093/nar/gks382

PMCID:: PMC3424549

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Select item 33831016.

Multiple Horizontal Gene Transfers of Ammonium Transporters/Ammonia Permeases from Prokaryotes to Eukaryotes: Toward a New Functional and Evolutionary Classification

Tami R. McDonald, Fred S. Dietrich, François Lutzoni

Mol Biol Evol. 2012 Jan; 29(1): 51–60. Published online 2011 Jun 16. doi: 10.1093/molbev/msr123

PMCID:: PMC3383101

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Select item 28052297.

Production of Glycolic Acid by Chemolithotrophic Iron- and Sulfur-Oxidizing Bacteria and Its Role in Delineating and Sustaining Acidophilic Sulfide Mineral-Oxidizing Consortia

Ivan Ñancucheo, D. Barrie Johnson

Appl Environ Microbiol. 2010 Jan; 76(2): 461–467. Published online 2009 Nov 20. doi: 10.1128/AEM.01832-09

PMCID:: PMC2805229

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Select item 27457668.

Community-wide analysis of microbial genome sequence signatures

Gregory J Dick, Anders F Andersson, Brett J Baker, Sheri L Simmons, Brian C Thomas, A Pepper Yelton, Jillian F Banfield

Genome Biol. 2009; 10(8): R85. Published online 2009 Aug 21. doi: 10.1186/gb-2009-10-8-r85

PMCID:: PMC2745766

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Select item 82649359.

Identification, Characterization, and Site-Specific Mutagenesis of a Thermostable ω-Transaminase from Chloroflexi bacterium

Chen Wang, Kexin Tang, Ya Dai, Honghua Jia, Yan Li, Zhen Gao, Bin Wu

ACS Omega. 2021 Jul 6; 6(26): 17058–17070. Published online 2021 Jun 25. doi: 10.1021/acsomega.1c02164

PMCID:: PMC8264935

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Select item 812662210.

Homogeneous Cytochrome 579 Is an Octamer That Reacts Too Slowly With Soluble Iron to Be the Initial Iron Oxidase in the Respiratory Chain of Leptospirillum ferriphilum

Robert C. Blake, II, John E. Shively, Russell Timkovich, Richard Allen White, III

Front Microbiol. 2021; 12: 673066. Published online 2021 May 3. doi: 10.3389/fmicb.2021.673066

PMCID:: PMC8126622

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Select item 700584311.

FeGenie: A Comprehensive Tool for the Identification of Iron Genes and Iron Gene Neighborhoods in Genome and Metagenome Assemblies

Arkadiy I. Garber, Kenneth H. Nealson, Akihiro Okamoto, Sean M. McAllister, Clara S. Chan, Roman A. Barco, Nancy Merino

Front Microbiol. 2020; 11: 37. Published online 2020 Jan 31. doi: 10.3389/fmicb.2020.00037

PMCID:: PMC7005843

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Select item 645174412.

Evolution of endonuclease IV protein family: an in silico analysis

Swarna Kanchan, Parva Sharma, Shibasish Chowdhury

3 Biotech. 2019 May; 9(5): 168. Published online 2019 Apr 6. doi: 10.1007/s13205-019-1696-6

PMCID:: PMC6451744

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Select item 577223413.

Multi-omics Reveals the Lifestyle of the Acidophilic, Mineral-Oxidizing Model Species Leptospirillum ferriphilum^T

Stephan Christel, Malte Herold, Sören Bellenberg, Mohamed El Hajjami, Antoine Buetti-Dinh, Igor V. Pivkin, Wolfgang Sand, Paul Wilmes, Ansgar Poetsch, Mark Dopson

Appl Environ Microbiol. 2018 Feb 1; 84(3): e02091-17. Prepublished online 2017 Nov 17. Published online 2018 Jan 17. doi: 10.1128/AEM.02091-17

PMCID:: PMC5772234

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Select item 504963914.

A decade of metaproteomics: Where we stand and what the future holds

Paul Wilmes, Anna Heintz‐Buschart, Philip L. Bond

Proteomics. 2015 Oct; 15(20): 3409–3417. Published online 2015 Sep 10. doi: 10.1002/pmic.201500183

PMCID:: PMC5049639

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Select item 449063515.

Horizontal gene transfer in an acid mine drainage microbial community

Jiangtao Guo, Qi Wang, Xiaoqi Wang, Fumeng Wang, Jinxian Yao, Huaiqiu Zhu

BMC Genomics. 2015; 16(1): 496. Published online 2015 Jul 4. doi: 10.1186/s12864-015-1720-0

PMCID:: PMC4490635

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Select item 444803916.

Microbial diversity and metabolic networks in acid mine drainage habitats

Celia Méndez-García, Ana I. Peláez, Victoria Mesa, Jesús Sánchez, Olga V. Golyshina, Manuel Ferrer

Front Microbiol. 2015; 6: 475. Published online 2015 May 29. doi: 10.3389/fmicb.2015.00475

PMCID:: PMC4448039

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Select item 443831717.

Ecological roles of dominant and rare prokaryotes in acid mine drainage revealed by metagenomics and metatranscriptomics

Zheng-Shuang Hua, Yu-Jiao Han, Lin-Xing Chen, Jun Liu, Min Hu, Sheng-Jin Li, Jia-Liang Kuang, Patrick SG Chain, Li-Nan Huang, Wen-Sheng Shu

ISME J. 2015 Jun; 9(6): 1280–1294. Published online 2014 Nov 7. doi: 10.1038/ismej.2014.212

PMCID:: PMC4438317

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Select item 392290618.

Evolutionary classification of ammonium, nitrate, and peptide transporters in land plants

Neil JJB von Wittgenstein, Cuong H Le, Barbara J Hawkins, Jürgen Ehlting

BMC Evol Biol. 2014; 14: 11. Published online 2014 Jan 20. doi: 10.1186/1471-2148-14-11

PMCID:: PMC3922906

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Select item 384369819.

Heterologous Expression of Mycobacterial Esx Complexes in Escherichia coli for Structural Studies Is Facilitated by the Use of Maltose Binding Protein Fusions

Mark A. Arbing, Sum Chan, Liam Harris, Emmeline Kuo, Tina T. Zhou, Christine J. Ahn, Lin Nguyen, Qixin He, Jamie Lu, Phuong T. Menchavez, Annie Shin, Thomas Holton, Michael R. Sawaya, Duilio Cascio, David Eisenberg

PLoS One. 2013; 8(11): e81753. Published online 2013 Nov 29. doi: 10.1371/journal.pone.0081753