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Select item 109281321.

On validly published names, correct names, and changes in the nomenclature of phyla and genera of prokaryotes: a guide for the perplexed

Aharon Oren

NPJ Biofilms Microbiomes. 2024; 10: 20. Published online 2024 Mar 11. doi: 10.1038/s41522-024-00494-9

PMCID:: PMC10928132

Article PDF–525K

Select item 108507872.

The membrane-cytoplasmic linker defines activity of FtsH proteases in Pseudomonas aeruginosa clone C

Gina D. Mawla, Shady M. Kamal, Lian-Ying Cao, Pasi Purhonen, Hans Hebert, Robert T. Sauer, Tania A. Baker, Ute Römling

J Biol Chem. 2024 Feb; 300(2): 105622. Published online 2024 Jan 3. doi: 10.1016/j.jbc.2023.105622

PMCID:: PMC10850787

Article PDF–3.8M

Select item 107907873.

Toxinome—the bacterial protein toxin database

Aleks Danov, Ofir Segev, Avi Bograd, Yedidya Ben Eliyahu, Noam Dotan, Tommy Kaplan, Asaf Levy

mBio. 2024 Jan; 15(1): e01911-23. Published online 2023 Dec 20. doi: 10.1128/mbio.01911-23

PMCID:: PMC10790787

Article PDF–6.4M

Select item 107837644.

Unraveling the plasticity of translation initiation in prokaryotes: Beyond the invariant Shine-Dalgarno sequence

Karel Estrada, Alejandro Garciarrubio, Enrique Merino

PLoS One. 2024; 19(1): e0289914. Published online 2024 Jan 11. doi: 10.1371/journal.pone.0289914

PMCID:: PMC10783764

Article PDF–4.4M

Select item 106063345.

Comparative Analysis and Phylogenetic Insights of Cas14-Homology Proteins in Bacteria and Archaea

Numan Ullah, Naisu Yang, Zhongxia Guan, Kuilin Xiang, Yali Wang, Mohamed Diaby, Cai Chen, Bo Gao, Chengyi Song

Genes (Basel) 2023 Oct; 14(10): 1911. Published online 2023 Oct 6. doi: 10.3390/genes14101911

PMCID:: PMC10606334

Article PDF–13M

Select item 104540236.

Genomic Distribution of ushA-like Genes in Bacteria: Comparison to cpdB-like Genes

João Meireles Ribeiro, José Carlos Cameselle

Genes (Basel) 2023 Aug; 14(8): 1657. Published online 2023 Aug 20. doi: 10.3390/genes14081657

PMCID:: PMC10454023

Article PDF–853K

Select item 103807947.

Origin and Early Diversification of the Papain Family of Cysteine Peptidases

Dušan Kordiš, Vito Turk

Int J Mol Sci. 2023 Jul; 24(14): 11761. Published online 2023 Jul 21. doi: 10.3390/ijms241411761

PMCID:: PMC10380794

Article PDF–1.8M

Select item 103307268.

BONCAT-FACS-Seq reveals the active fraction of a biocrust community undergoing a wet-up event

Ryan V. Trexler, Marc W. Van Goethem, Danielle Goudeau, Nandita Nath, Rex R. Malmstrom, Trent R. Northen, Estelle Couradeau

Front Microbiol. 2023; 14: 1176751. Published online 2023 Jun 26. doi: 10.3389/fmicb.2023.1176751

PMCID:: PMC10330726

Article PDF–5.9M

Select item 102312509.

Microbial Diversity Biased Estimation Caused by Intragenomic Heterogeneity and Interspecific Conservation of 16S rRNA Genes

Piaopiao Pan, Yichao Gu, Dong-Lei Sun, Qinglong L. Wu, Ning-Yi Zhou

Appl Environ Microbiol. 2023 May; 89(5): e02108-22. Published online 2023 Apr 27. doi: 10.1128/aem.02108-22

PMCID:: PMC10231250

Article PDF–2.9M

Select item 1017293310.

Bacterial community structure in geothermal springs on the northern edge of Qinghai-Tibet plateau

Huai-sheng Zhang, Qing-da Feng, Ding-yue Zhang, Gui-lin Zhu, Li Yang

Front Microbiol. 2022; 13: 994179. Published online 2023 Jan 31. doi: 10.3389/fmicb.2022.994179

PMCID:: PMC10172933

Article PDF–12M

Select item 975129311.

Unique H₂-utilizing lithotrophy in serpentinite-hosted systems

Masaru Konishi Nobu, Ryosuke Nakai, Satoshi Tamazawa, Hiroshi Mori, Atsushi Toyoda, Akira Ijiri, Shino Suzuki, Ken Kurokawa, Yoichi Kamagata, Hideyuki Tamaki

ISME J. 2023 Jan; 17(1): 95–104. Published online 2022 Oct 7. doi: 10.1038/s41396-022-01197-9

PMCID:: PMC9751293

Article PDF–2.5M

Select item 953993812.

Salicylic acid remodeling of the rhizosphere microbiome induces watermelon root resistance against Fusarium oxysporum f. sp. niveum infection

Feiying Zhu, Yong Fang, Zhiwei Wang, Pei Wang, Kankan Yang, Langtao Xiao, Ruozhong Wang

Front Microbiol. 2022; 13: 1015038. Published online 2022 Sep 23. doi: 10.3389/fmicb.2022.1015038

PMCID:: PMC9539938

Article PDF–2.4M

Select item 915745913.

Semi-subterranean environment and soil metagenomic datasets of the Gyeongju Seokbinggo (stone ice storage) in South Korea

YoungHee Kim, Boa Lim, JiHee Park, SooJi Kim

Data Brief. 2022 Jun; 42: 108308. Published online 2022 May 21. doi: 10.1016/j.dib.2022.108308

PMCID:: PMC9157459

Article PDF–1.2M

Select item 891374514.

Integrated metagenomics identifies a crucial role for trimethylamine-producing Lachnoclostridium in promoting atherosclerosis

Yuan-Yuan Cai, Feng-Qing Huang, Xingzhen Lao, Yawen Lu, Xuejiao Gao, Raphael N. Alolga, Kunpeng Yin, Xingchen Zhou, Yun Wang, Baolin Liu, Jing Shang, Lian-Wen Qi, Jing Li

NPJ Biofilms Microbiomes. 2022; 8: 11. Published online 2022 Mar 10. doi: 10.1038/s41522-022-00273-4

Correction in:: NPJ Biofilms Microbiomes. 2022; 8: 40.

PMCID:: PMC8913745

Article PDF–3.7M

Select item 885724815.

Thermophiles and carbohydrate-active enzymes (CAZymes) in biofilm microbial consortia that decompose lignocellulosic plant litters at high temperatures

Kok Jun Liew, Chee Hung Liang, Yee Ting Lau, Amira Suriaty Yaakop, Kok-Gan Chan, Saleha Shahar, Mohd Shahir Shamsir, Kian Mau Goh

Sci Rep. 2022; 12: 2850. Published online 2022 Feb 18. doi: 10.1038/s41598-022-06943-9

PMCID:: PMC8857248

Article PDF–2.2M

Select item 876705716.

A Genomic Perspective Across Earth’s Microbiomes Reveals That Genome Size in Archaea and Bacteria Is Linked to Ecosystem Type and Trophic Strategy

Alejandro Rodríguez-Gijón, Julia K. Nuy, Maliheh Mehrshad, Moritz Buck, Frederik Schulz, Tanja Woyke, Sarahi L. Garcia

Front Microbiol. 2021; 12: 761869. Published online 2022 Jan 5. doi: 10.3389/fmicb.2021.761869

PMCID:: PMC8767057

Article PDF–2.3M

Select item 865607217.

Comparative study of microbial structure and functional profile of sunflower rhizosphere grown in two fields

Blessing Chidinma Nwachukwu, Ayansina Segun Ayangbenro, Olubukola Oluranti Babalola

BMC Microbiol. 2021; 21: 337. Published online 2021 Dec 9. doi: 10.1186/s12866-021-02397-7

PMCID:: PMC8656072

Article PDF–1.9M

Select item 861225218.

Heliorhodopsin Evolution Is Driven by Photosensory Promiscuity in Monoderms

Paul-Adrian Bulzu, Vinicius Silva Kavagutti, Maria-Cecilia Chiriac, Charlotte D. Vavourakis, Keiichi Inoue, Hideki Kandori, Adrian-Stefan Andrei, Rohit Ghai

mSphere. 2021 Nov-Dec; 6(6): e00661-21. Published online 2021 Nov 24. doi: 10.1128/mSphere.00661-21