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Select item 25161021.

Two New Y-Linked Genes in Drosophila melanogaster

Maria D. Vibranovski, Leonardo B. Koerich, A. Bernardo Carvalho

Genetics. 2008 Aug; 179(4): 2325–2327. doi: 10.1534/genetics.108.086819

PMCID:: PMC2516102

Article PDF–71K

Select item 46035132.

Birth of a new gene on the Y chromosome of Drosophila melanogaster

Antonio Bernardo Carvalho, Beatriz Vicoso, Claudia A. M. Russo, Bonnielin Swenor, Andrew G. Clark

Proc Natl Acad Sci U S A. 2015 Oct 6; 112(40): 12450–12455. Published online 2015 Sep 18. doi: 10.1073/pnas.1516543112

Correction in:: Proc Natl Acad Sci U S A. 2015 Nov 3; 112(44): E6081.

PMCID:: PMC4603513

Article PDF–847K

Select item 78247943.

Drosophila melanogaster Y Chromosome Genes Affect Male Sensitivity to Microbial Infections

Gloria Bartolo, Leandra O. Gonzalez, Anastasia Levitin, Mikhail Martchenko Shilman

Insects. 2021 Jan; 12(1): 30. Published online 2021 Jan 5. doi: 10.3390/insects12010030

PMCID:: PMC7824794

Article PDF–1.8M

Select item 71539334.

Dissecting Fertility Functions of Drosophila Y Chromosome Genes with CRISPR

Yassi Hafezi, Samantha R. Sruba, Steven R. Tarrash, Mariana F. Wolfner, Andrew G. Clark

Genetics. 2020 Apr; 214(4): 977–990. Published online 2020 Feb 25. doi: 10.1534/genetics.120.302672

PMCID:: PMC7153933

Article PDF–1.4M

Select item 41669215.

Positive and Purifying Selection on the Drosophila Y Chromosome

Nadia D. Singh, Leonardo B. Koerich, Antonio Bernardo Carvalho, Andrew G. Clark

Mol Biol Evol. 2014 Oct; 31(10): 2612–2623. Published online 2014 Jun 27. doi: 10.1093/molbev/msu203

PMCID:: PMC4166921

Article PDF–1.1M

Select item 87944746.

Unique structure and positive selection promote the rapid divergence of Drosophila Y chromosomes

Ching-Ho Chang, Lauren E Gregory, Kathleen E Gordon, Colin D Meiklejohn, Amanda M Larracuente

eLife. 2022; 11: e75795. Published online 2022 Jan 6. doi: 10.7554/eLife.75795

PMCID:: PMC8794474

Article PDF–2.7M

Select item 73370687.

The Role of Y Chromosome Genes in Male Fertility in Drosophila melanogaster

Jiaying Zhang, Junjie Luo, Jieyan Chen, Junbiao Dai, Craig Montell

Genetics. 2020 Jul; 215(3): 623–633. Published online 2020 May 13. doi: 10.1534/genetics.120.303324

PMCID:: PMC7337068

Article PDF–1.6M

Select item 63257068.

Heterochromatin-Enriched Assemblies Reveal the Sequence and Organization of the Drosophila melanogaster Y Chromosome

Ching-Ho Chang, Amanda M. Larracuente

Genetics. 2019 Jan; 211(1): 333–348. Published online 2018 Nov 12. doi: 10.1534/genetics.118.301765

PMCID:: PMC6325706

Article PDF–1.4M

Select item 86172489.

A transposon expression burst accompanies the activation of Y-chromosome fertility genes during Drosophila spermatogenesis

Matthew A. Lawlor, Weihuan Cao, Christopher E. Ellison

Nat Commun. 2021; 12: 6854. Published online 2021 Nov 25. doi: 10.1038/s41467-021-27136-4

PMCID:: PMC8617248

Article PDF–1.2M

Select item 410543110.

How Do Y-Chromosomes Modulate Genome-Wide Epigenetic States: Genome Folding, Chromatin Sinks, and Gene Expression

Flávio O. Francisco, Bernardo Lemos

J Genomics. 2014; 2: 94–103. Published online 2014 May 1. doi: 10.7150/jgen.8043

PMCID:: PMC4105431

Article PDF–686K

Select item 903125911.

Drosophila as a Model System for Studying of the Evolution and Functional Specialization of the Y Chromosome

Alexei A. Kotov, Sergei S. Bazylev, Vladimir E. Adashev, Aleksei S. Shatskikh, Ludmila V. Olenina

Int J Mol Sci. 2022 Apr; 23(8): 4184. Published online 2022 Apr 10. doi: 10.3390/ijms23084184

PMCID:: PMC9031259

Article PDF–1.5M

Select item 949423912.

Functional Diversity and Evolution of the Drosophila Sperm Proteome

Martin D. Garlovsky, Jessica A. Sandler, Timothy L. Karr

Mol Cell Proteomics. 2022 Oct; 21(10): 100281. Published online 2022 Aug 17. doi: 10.1016/j.mcpro.2022.100281

PMCID:: PMC9494239

Article PDF–1.7M

Select item 271302913.

Low conservation of gene content in the Drosophila Y chromosome

Leonardo B. Koerich, Xiaoyun Wang, Andrew G. Clark, Antonio Bernardo Carvalho

Nature. Author manuscript; available in PMC 2009 Jul 20.

Published in final edited form as: Nature. 2008 Dec 18; 456(7224): 949–951. Published online 2008 Nov 16. doi: 10.1038/nature07463

PMCID:: PMC2713029

Article PDF–913K

Select item 353067714.

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras

Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112

PMCID:: PMC3530677

Article PDF–1.5M

Select item 570780515.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Article PDF–3.2M

Select item 568900216.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Article PDF–4.0M

Select item 435288717.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Article PDF–1022K

Select item 282505318.

Sequence Finishing and Mapping of Drosophila melanogaster Heterochromatin

Roger A. Hoskins, Joseph W. Carlson, Cameron Kennedy, David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H. Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H. Karpen, Susan E. Celniker

Science. Author manuscript; available in PMC 2010 Feb 19.

Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1625–1628. doi: 10.1126/science.1139816

PMCID:: PMC2825053

Article PDF–858K

Select item 281928019.

The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin

Christopher D. Smith, ShengQiang Shu, Christopher J. Mungall, Gary H. Karpen

Science. Author manuscript; available in PMC 2010 Feb 10.

Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1586. doi: 10.1126/science.1139815

Correction in:: volume 317 on page 1325

PMCID:: PMC2819280

Article PDF–1.3M

Select item 118564820.

Combined Evidence Annotation of Transposable Elements in Genome Sequences

Hadi Quesneville, Casey M Bergman, Olivier Andrieu, Delphine Autard, Danielle Nouaud, Michael Ashburner, Dominique Anxolabehere

PLoS Comput Biol. 2005 Jul; 1(2): e22. Published online 2005 Jul 29. doi: 10.1371/journal.pcbi.0010022

PMCID:: PMC1185648

Article PDF–273K

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