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Items: 19

1.
Improved 18S and 28S rDNA primer sets for NGS-based parasite detection
Asuka Kounosu, Kazunori Murase, Akemi Yoshida, Haruhiko Maruyama, Taisei Kikuchi
Sci Rep. 2019; 9: 15789. Published online 2019 Oct 31. doi: 10.1038/s41598-019-52422-z
PMCID:
PMC6823512
ArticlePDF–1.3M
2.
The nucleotide sequence of Saccharomyces cerevisiae chromosome XII
M. Johnston, L. Hillier, L. Riles, other members of the Genome Sequencing Center, K. Albermann, B. André, W. Ansorge, V. Benes, M. Brückner, H. Delius, E. Dubois, A. Düsterhöft, K.-D. Entian, M. Floeth, A. Goffeau, U. Hebling, K. Heumann, D. Heuss-Neitzel, H. Hilbert, F. Hilger, K. Kleine, P. Kötter, E. J. Louis, F. Messenguy, H. W. Mewes, T. Miosga, D. Möstl, S. Müller-Auer, U. Nentwich, B. Obermaier, E. Piravandi, T. M. Pohl, D. Portetelle, B. Purnelle, S. Rechmann, M. Rieger, M. Rinke, M. Rose, M. Scharfe, B. Scherens, P. Scholler, C. Schwager, S. Schwarz, A. P. Underwood, L. A. Urrestarazu, M. Vandenbol, P. Verhasselt, F. Vierendeels, M Voet, G. Volckaert, H. Voss, R. Wambutt, E. Wedler, H. Wedler, F. K. Zimmermann, A. Zollner, J. Hani, J. D. Hoheisel
Nature. Author manuscript; available in PMC 2019 Jul 9.
Published in final edited form as: Nature. 1997 May 29; 387(6632 Suppl): 87–90.
PMCID:
PMC6615710
ArticlePDF–424K
3.
Modulation of acetate utilization in Komagataella phaffii by metabolic engineering of tolerance and metabolism
Qin Xu, Chenxiao Bai, Yiqi Liu, Lili Song, Lin Tian, Yunfeng Yan, Jinfeng Zhou, Xiangshan Zhou, Yuanxing Zhang, Menghao Cai
Biotechnol Biofuels. 2019; 12: 61. Published online 2019 Mar 21. doi: 10.1186/s13068-019-1404-0
PMCID:
PMC6427870
ArticlePDF–3.8M
4.
Saccharomyces cerevisiae Differential Functionalization of Presumed ScALT1 and ScALT2 Alanine Transaminases Has Been Driven by Diversification of Pyridoxal Phosphate Interactions
Erendira Rojas-Ortega, Beatriz Aguirre-López, Horacio Reyes-Vivas, Martín González-Andrade, Jose C. Campero-Basaldúa, Juan P. Pardo, Alicia González
Front Microbiol. 2018; 9: 944. Published online 2018 May 14. doi: 10.3389/fmicb.2018.00944
PMCID:
PMC5960717
ArticlePDF–3.5M
5.
Whole-Genome Sequence and Variant Analysis of W303, a Widely-Used Strain of Saccharomyces cerevisiae
Kinnari Matheson, Lance Parsons, Alison Gammie
G3 (Bethesda) 2017 Jul; 7(7): 2219–2226. Published online 2017 Jun 5. doi: 10.1534/g3.117.040022
PMCID:
PMC5499129
ArticlePDF–1.5M
6.
Scarless Gene Tagging with One-Step Transformation and Two-Step Selection in Saccharomyces cerevisiae and Schizosaccharomyces pombe
Dirk Landgraf, Dann Huh, Erinc Hallacli, Susan Lindquist
PLoS One. 2016; 11(10): e0163950. Published online 2016 Oct 13. doi: 10.1371/journal.pone.0163950
PMCID:
PMC5063382
ArticlePDF–4.1M
7.
Extracting DNA words based on the sequence features: non-uniform distribution and integrity
Zhi Li, Hongyan Cao, Yuehua Cui, Yanbo Zhang
Theor Biol Med Model. 2016; 13: 2. Published online 2016 Jan 25. doi: 10.1186/s12976-016-0028-3
PMCID:
PMC4727310
ArticlePDF–785K
8.
hUTP24 is essential for processing of the human rRNA precursor at site A1, but not at site A0
Rafal Tomecki, Anna Labno, Karolina Drazkowska, Dominik Cysewski, Andrzej Dziembowski
RNA Biol. 2015 Sep; 12(9): 1010–1029. Published online 2015 Aug 3. doi: 10.1080/15476286.2015.1073437
PMCID:
PMC4615547
ArticlePDF–1.4M
9.
Ribosomal Database Project: data and tools for high throughput rRNA analysis
James R. Cole, Qiong Wang, Jordan A. Fish, Benli Chai, Donna M. McGarrell, Yanni Sun, C. Titus Brown, Andrea Porras-Alfaro, Cheryl R. Kuske, James M. Tiedje
Nucleic Acids Res. 2014 Jan 1; 42(Database issue): D633–D642. Published online 2013 Nov 27. doi: 10.1093/nar/gkt1244
PMCID:
PMC3965039
ArticlePDF–509K
10.
The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry
G3 (Bethesda) 2014 Mar; 4(3): 389–398. Published online 2013 Dec 27. doi: 10.1534/g3.113.008995
PMCID:
PMC3962479
ArticlePDF–1006K
11.
Reliable differentiation of Meyerozyma guilliermondii from Meyerozyma caribbica by internal transcribed spacer restriction fingerprinting
Wahengbam Romi, Santosh Keisam, Giasuddin Ahmed, Kumaraswamy Jeyaram
BMC Microbiol. 2014; 14: 52. Published online 2014 Feb 28. doi: 10.1186/1471-2180-14-52
PMCID:
PMC3946169
ArticlePDF–2.3M
12.
Genomes of Ashbya Fungi Isolated from Insects Reveal Four Mating-Type Loci, Numerous Translocations, Lack of Transposons, and Distinct Gene Duplications
Fred S. Dietrich, Sylvia Voegeli, Sidney Kuo, Peter Philippsen
G3 (Bethesda) 2013 Aug; 3(8): 1225–1239. Published online 2013 Aug 1. doi: 10.1534/g3.112.002881
PMCID:
PMC3737163
ArticlePDF–1.8M
13.
Examining new phylogenetic markers to uncover the evolutionary history of early-diverging fungi: comparing MCM7, TSR1 and rRNA genes for single- and multi-gene analyses of the Kickxellomycotina
E.D. Tretter, E.M. Johnson, Y. Wang, P. Kandel, M.M. White
Persoonia. 2013 Jun; 30: 106–125. Published online 2013 Mar 20. doi: 10.3767/003158513X666394
PMCID:
PMC3734964
ArticlePDF–786K
14.
Two CDC42 paralogs modulate C. neoformans thermotolerance and morphogenesis under host physiological conditions
Elizabeth R. Ballou, Connie B. Nichols, Kathleen J Miglia, Lukasz Kozubowski, J. Andrew Alspaugh
Mol Microbiol. Author manuscript; available in PMC 2013 Jun 18.
Published in final edited form as: Mol Microbiol. 2010 Feb; 75(3): 763–780. Published online 2009 Dec 16. doi: 10.1111/j.1365-2958.2009.07019.x
PMCID:
PMC3685590
ArticlePDF–5.1M
15.
Factors That Affect Large Subunit Ribosomal DNA Amplicon Sequencing Studies of Fungal Communities: Classification Method, Primer Choice, and Error
Teresita M. Porter, G. Brian Golding
PLoS One. 2012; 7(4): e35749. Published online 2012 Apr 27. doi: 10.1371/journal.pone.0035749
Correction in:
PLoS One. 2012; 7(8): 10.1371/annotation/188edbe7-9f2e-4031-9155-d4a9337e6257.
PMCID:
PMC3338786
ArticlePDF–879K
16.
Saccharomyces Genome Database: the genomics resource of budding yeast
J. Michael Cherry, Eurie L. Hong, Craig Amundsen, Rama Balakrishnan, Gail Binkley, Esther T. Chan, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Benjamin C. Hitz, Kalpana Karra, Cynthia J. Krieger, Stuart R. Miyasato, Rob S. Nash, Julie Park, Marek S. Skrzypek, Matt Simison, Shuai Weng, Edith D. Wong
Nucleic Acids Res. 2012 Jan; 40(Database issue): D700–D705. Published online 2011 Nov 21. doi: 10.1093/nar/gkr1029
PMCID:
PMC3245034
ArticlePDF–103K
17.
Saccharomyces cerevisiae S288C genome annotation: a working hypothesis
Dianna G. Fisk, Catherine A. Ball, Kara Dolinski, Stacia R. Engel, Eurie L. Hong, Laurie Issel-Tarver, Katja Schwartz, Anand Sethuraman, David Botstein, J. Michael Cherry, The Saccharomyces Genome Database Project
Yeast. Author manuscript; available in PMC 2011 Feb 16.
Published in final edited form as: Yeast. 2006 Sep; 23(12): 857–865. doi: 10.1002/yea.1400
PMCID:
PMC3040122
ArticlePDF–122K
18.
Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes
Celine A Hayden, Richard A Jorgensen
BMC Biol. 2007; 5: 32. Published online 2007 Jul 30. doi: 10.1186/1741-7007-5-32
PMCID:
PMC2075485
ArticlePDF–1.1M
19.
The Growth-Regulatory Protein HCRP1/hVps37A Is a Subunit of Mammalian ESCRT-I and Mediates Receptor Down-Regulation
Kristi G. Bache, Thomas Slagsvold, Alicia Cabezas, Ken R. Rosendal, Camilla Raiborg, Harald Stenmark
Mol Biol Cell. 2004 Sep; 15(9): 4337–4346. doi: 10.1091/mbc.E04-03-0250
PMCID:
PMC515363
ArticlePDF–487K

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