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Items: 1 to 20 of 29

1.
In vivo CRISPR screening identifies BAZ2 chromatin remodelers as druggable regulators of mammalian liver regeneration
Yuemeng Jia, Lin Li, Yu-Hsuan Lin, Purva Gopal, Shunli Shen, Kejin Zhou, Xueliang Yu, Tripti Sharma, Yu Zhang, Daniel J. Siegwart, Joseph M. Ready, Hao Zhu
Cell Stem Cell. Author manuscript; available in PMC 2023 Mar 3.
Published in final edited form as: Cell Stem Cell. 2022 Mar 3; 29(3): 372–385.e8. Published online 2022 Jan 31. doi: 10.1016/j.stem.2022.01.001
PMCID:
PMC8897233
ArticlePDF–3.9M
2.
Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development
Francesco Bedogni, Robert F. Hevner
Front Mol Neurosci. 2021; 14: 686034. Published online 2021 Jul 12. doi: 10.3389/fnmol.2021.686034
PMCID:
PMC8313239
ArticlePDF–1.6M
3.
BAZ2A safeguards genome architecture of ground‐state pluripotent stem cells
Damian Dalcher, Jennifer Yihong Tan, Cristiana Bersaglieri, Rodrigo Peña‐Hernández, Eva Vollenweider, Stefan Zeyen, Marc W Schmid, Valerio Bianchi, Stefan Butz, Marcin Roganowicz, Rostyslav Kuzyakiv, Tuncay Baubec, Ana Claudia Marques, Raffaella Santoro
EMBO J. 2020 Dec 1; 39(23): e105606. Published online 2020 Oct 14. doi: 10.15252/embj.2020105606
PMCID:
PMC7705451
ArticlePDF–4.7M
4.
TIP5 primes prostate luminal cells for the oncogenic transformation mediated by PTEN-loss
Karolina Pietrzak, Rostyslav Kuzyakiv, Ronald Simon, Marco Bolis, Dominik Bär, Rossana Aprigliano, Jean-Philippe Theurillat, Guido Sauter, Raffaella Santoro
Proc Natl Acad Sci U S A. 2020 Feb 18; 117(7): 3637–3647. Published online 2020 Feb 5. doi: 10.1073/pnas.1911673117
PMCID:
PMC7035629
ArticlePDF–2.7M
5.
The Epigenetic Factor Landscape of Developing Neocortex Is Regulated by Transcription Factors Pax6→ Tbr2→ Tbr1
Gina E. Elsen, Francesco Bedogni, Rebecca D. Hodge, Theo K. Bammler, James W. MacDonald, Susan Lindtner, John L. R. Rubenstein, Robert F. Hevner
Front Neurosci. 2018; 12: 571. Published online 2018 Aug 22. doi: 10.3389/fnins.2018.00571
PMCID:
PMC6113890
ArticlePDF–4.8M
6.
Fancd2 in vivo interaction network reveals a non-canonical role in mitochondrial function
Tingting Zhang, Wei Du, Andrew F. Wilson, Satoshi H. Namekawa, Paul R. Andreassen, Amom Ruhikanta Meetei, Qishen Pang
Sci Rep. 2017; 7: 45626. Published online 2017 Apr 5. doi: 10.1038/srep45626
PMCID:
PMC5381226
ArticlePDF–1.4M
7.
Oncogenic RAS directs silencing of tumor suppressor genes through ordered recruitment of transcriptional repressors
Narendra Wajapeyee, Sunil K. Malonia, Rajendra K. Palakurthy, Michael R. Green
Genes Dev. 2013 Oct 15; 27(20): 2221–2226. doi: 10.1101/gad.227413.113
PMCID:
PMC3814642
ArticlePDF–1.0M
8.
A High Resolution Molecular Atlas of the Fetal Mouse Lower Urogenital Tract
Lisa L. Abler, Kimberly P. Keil, Vatsal Mehta, Pinak S. Joshi, Christopher T. Schmitz, Chad M. Vezina
Dev Dyn. Author manuscript; available in PMC 2013 Feb 27.
Published in final edited form as: Dev Dyn. 2011 Oct; 240(10): 2364–2377. Published online 2011 Sep 8. doi: 10.1002/dvdy.22730
PMCID:
PMC3583531
ArticlePDF–4.2M
9.
A Genome-Wide Screen to Identify Transcription Factors Expressed in Pelvic Ganglia of the Lower Urinary Tract
Carrie B. Wiese, Sara Ireland, Nicole L. Fleming, Jing Yu, M. Todd Valerius, Kylie Georgas, Han Sheng Chiu, Jane Brennan, Jane Armstrong, Melissa H. Little, Andrew P. McMahon, E. Michelle Southard-Smith
Front Neurosci. 2012; 6: 130. Published online 2012 Sep 12. doi: 10.3389/fnins.2012.00130
PMCID:
PMC3439845
ArticlePDF–1.4M
10.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
ArticlePDF–1.0M
11.
A High Throughput in situ Hybridization Method to Characterize mRNA Expression Patterns in the Fetal Mouse Lower Urogenital Tract
Lisa L. Abler, Vatsal Mehta, Kimberly P. Keil, Pinak S. Joshi, Chelsea-Leigh Flucus, Heather A. Hardin, Christopher T. Schmitz, Chad M. Vezina
J Vis Exp. 2011; (54): 2912. Published online 2011 Aug 19. doi: 10.3791/2912
PMCID:
PMC3177421
ArticlePDF–510K
12.
Development, Maturation, and Necessity of Transcription Factors in the Mouse Suprachiasmatic Nucleus
Cassandra VanDunk, Lindsay A. Hunter, Paul A. Gray
J Neurosci. 2011 Apr 27; 31(17): 6457–6467. doi: 10.1523/JNEUROSCI.5385-10.2011
PMCID:
PMC3106226
ArticlePDF–5.9M
13.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
ArticlePDF–3.8M
14.
The NoRC complex mediates the heterochromatin formation and stability of silent rRNA genes and centromeric repeats
Claudio Guetg, Philipp Lienemann, Valentina Sirri, Ingrid Grummt, Danièle Hernandez-Verdun, Michael O Hottiger, Martin Fussenegger, Raffaella Santoro
EMBO J. 2010 Jul 7; 29(13): 2135–2146. Published online 2010 Feb 18. doi: 10.1038/emboj.2010.17
Correction in:
EMBO J. 2010 Jul 7; 29(13): 2253.
PMCID:
PMC2905252
ArticlePDF–1.0M
15.
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin
Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108
PMCID:
PMC2556270
ArticlePDF–493K
16.
The structure of NoRC-associated RNA is crucial for targeting the chromatin remodelling complex NoRC to the nucleolus
Christine Mayer, Melanie Neubert, Ingrid Grummt
EMBO Rep. 2008 Aug; 9(8): 774–780. Published online 2008 Jul 4. doi: 10.1038/embor.2008.109
PMCID:
PMC2515205
ArticlePDF–872K
17.
BGEM: An In Situ Hybridization Database of Gene Expression in the Embryonic and Adult Mouse Nervous System
Susan Magdaleno, Patricia Jensen, Craig L Brumwell, Anna Seal, Karen Lehman, Andrew Asbury, Tony Cheung, Tommie Cornelius, Diana M Batten, Christopher Eden, Shannon M Norland, Dennis S Rice, Nilesh Dosooye, Sundeep Shakya, Perdeep Mehta, Tom Curran
PLoS Biol. 2006 Apr; 4(4): e86. Published online 2006 Mar 28. doi: 10.1371/journal.pbio.0040086
PMCID:
PMC1413568
ArticlePDF–99K
18.
The chromatin remodeling complex NoRC controls replication timing of rRNA genes
Junwei Li, Raffaella Santoro, Karel Koberna, Ingrid Grummt
EMBO J. 2005 Jan 12; 24(1): 120–127. Published online 2004 Dec 2. doi: 10.1038/sj.emboj.7600492
PMCID:
PMC544905
ArticlePDF–304K
19.
Genomic Analysis of Mouse Retinal Development
Seth Blackshaw, Sanjiv Harpavat, Jeff Trimarchi, Li Cai, Haiyan Huang, Winston P Kuo, Griffin Weber, Kyungjoon Lee, Rebecca E Fraioli, Seo-Hee Cho, Rachel Yung, Elizabeth Asch, Lucila Ohno-Machado, Wing H Wong, Constance L Cepko
PLoS Biol. 2004 Sep; 2(9): e247. Published online 2004 Jun 29. doi: 10.1371/journal.pbio.0020247
PMCID:
PMC439783
ArticlePDF–975K
20.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
ArticlePDF–3.4M

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