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Items: 20

1.
Lack of collagen α6(IV) chain in mice does not cause severe-to-profound hearing loss or cochlear malformation, a distinct phenotype from nonsyndromic hearing loss with COL4A6 missense mutation
Shaoying Tang, Tomoko Yonezawa, Yukihide Maeda, Mitsuaki Ono, Takahiro Maeba, Toru Miyoshi, Ryusuke Momota, Yasuko Tomono, Toshitaka Oohashi
PLoS One. 2021; 16(4): e0249909. Published online 2021 Apr 13. doi: 10.1371/journal.pone.0249909
PMCID:
PMC8043391
ArticlePDF–3.2M
2.
Type IV collagen α6 chain is a regulator of keratin 10 in keratinization of oral mucosal epithelium
Taishi Komori, Mitsuaki Ono, Emilio Satoshi Hara, Junji Ueda, Ha Thi Thu Nguyen, Ha Thi Nguyen, Tomoko Yonezawa, Takahiro Maeba, Aya Kimura-Ono, Takeshi Takarada, Ryusuke Momota, Kenji Maekawa, Takuo Kuboki, Toshitaka Oohashi
Sci Rep. 2018; 8: 2612. Published online 2018 Feb 8. doi: 10.1038/s41598-018-21000-0
PMCID:
PMC5805778
ArticlePDF–2.3M
3.
Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression
Alexandra Naba, Karl R. Clauser, D. R. Mani, Steven A. Carr, Richard O. Hynes
Sci Rep. 2017; 7: 40495. Published online 2017 Jan 10. doi: 10.1038/srep40495
PMCID:
PMC5223159
ArticlePDF–2.3M
4.
COL4A6 is dispensable for autosomal recessive Alport syndrome
Tomohiro Murata, Kan Katayama, Toshitaka Oohashi, Timo Jahnukainen, Tomoko Yonezawa, Yoshikazu Sado, Eiji Ishikawa, Shinsuke Nomura, Karl Tryggvason, Masaaki Ito
Sci Rep. 2016; 6: 29450. Published online 2016 Jul 5. doi: 10.1038/srep29450
PMCID:
PMC4932521
ArticlePDF–2.3M
5.
Thyroid follicle development requires Smad1/5- and endothelial cell-dependent basement membrane assembly
Mylah Villacorte, Anne-Sophie Delmarcelle, Manon Lernoux, Mahé Bouquet, Pascale Lemoine, Jennifer Bolsée, Lieve Umans, Susana Chuva de Sousa Lopes, Patrick Van Der Smissen, Takako Sasaki, Guido Bommer, Patrick Henriet, Samuel Refetoff, Frédéric P. Lemaigre, An Zwijsen, Pierre J. Courtoy, Christophe E. Pierreux
Development. 2016 Jun 1; 143(11): 1958–1970. doi: 10.1242/dev.134171
PMCID:
PMC4920163
Article
6.
Developmental distribution of collagen IV isoforms and relevance to ocular diseases
Xiaoyang Bai, David J. Dilworth, Yi-Chinn Weng, Douglas B. Gould
Matrix Biol. Author manuscript; available in PMC 2016 Feb 10.
Published in final edited form as: Matrix Biol. 2009 May; 28(4): 194–201. Published online 2009 Mar 9. doi: 10.1016/j.matbio.2009.02.004
PMCID:
PMC4749355
ArticlePDF–899K
7.
Difference in expression of hepatic microRNAs miR-29c, miR-34a, miR-155, and miR-200b is associated with strain-specific susceptibility to dietary nonalcoholic steatohepatitis in mice
Igor P. Pogribny, Athena Starlard-Davenport, Volodymyr P. Tryndyak, Tao Han, Sharon A. Ross, Ivan Rusyn, Frederick A. Beland
Lab Invest. Author manuscript; available in PMC 2015 Jan 2.
Published in final edited form as: Lab Invest. 2010 Oct; 90(10): 1437–1446. Published online 2010 Jun 14. doi: 10.1038/labinvest.2010.113
PMCID:
PMC4281935
ArticlePDF–547K
8.
D-2-hydroxyglutarate produced by mutant IDH1 perturbs collagen maturation and basement membrane function
Masato Sasaki, Christiane B. Knobbe, Momoe Itsumi, Andrew J. Elia, Isaac S. Harris, Iok In Christine Chio, Rob A. Cairns, Susan McCracken, Andrew Wakeham, Jillian Haight, Annick You Ten, Bryan Snow, Takeshi Ueda, Satoshi Inoue, Kazuo Yamamoto, Myunggon Ko, Anjana Rao, Katharine E. Yen, Shinsan M. Su, Tak Wah Mak
Genes Dev. 2012 Sep 15; 26(18): 2038–2049. doi: 10.1101/gad.198200.112
PMCID:
PMC3444730
ArticlePDF–1.6M
9.
The Matrisome: In Silico Definition and In Vivo Characterization by Proteomics of Normal and Tumor Extracellular Matrices
Alexandra Naba, Karl R. Clauser, Sebastian Hoersch, Hui Liu, Steven A. Carr, Richard O. Hynes
Mol Cell Proteomics. 2012 Apr; 11(4): M111.014647. Published online 2011 Dec 9. doi: 10.1074/mcp.M111.014647
PMCID:
PMC3322572
ArticlePDF–7.3M
10.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
ArticlePDF–1.0M
11.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
ArticlePDF–3.8M
12.
Hopx and Hdac2 interact to modulate Gata4 acetylation and embryonic cardiac myocyte proliferation
Chinmay M. Trivedi, Wenting Zhu, Qiaohong Wang, Cheng Jia, Hae Jin Kee, Li Li, Sridhar Hannenhalli, Jonathan A. Epstein
Dev Cell. Author manuscript; available in PMC 2011 Sep 14.
Published in final edited form as: Dev Cell. 2010 Sep 14; 19(3): 450–459. doi: 10.1016/j.devcel.2010.08.012
PMCID:
PMC2947937
ArticlePDF–2.3M
13.
Abnormal Expression of Collagen IV in Lens Activates Unfolded Protein Response Resulting in Cataract
Zeynep Firtina, Brian P. Danysh, Xiaoyang Bai, Douglas B. Gould, Takehiro Kobayashi, Melinda K. Duncan
J Biol Chem. 2009 Dec 18; 284(51): 35872–35884. Published online 2009 Oct 26. doi: 10.1074/jbc.M109.060384
PMCID:
PMC2791016
ArticlePDF–7.2M
14.
Transcriptome-based systematic identification of extracellular matrix proteins
Ri-ichiroh Manabe, Ko Tsutsui, Tomiko Yamada, Mina Kimura, Itsuko Nakano, Chisei Shimono, Noriko Sanzen, Yutaka Furutani, Tomohiko Fukuda, Yasuko Oguri, Keiko Shimamoto, Daiji Kiyozumi, Yuya Sato, Yoshikazu Sado, Haruki Senoo, Shohei Yamashina, Shiro Fukuda, Jun Kawai, Nobuo Sugiura, Koji Kimata, Yoshihide Hayashizaki, Kiyotoshi Sekiguchi
Proc Natl Acad Sci U S A. 2008 Sep 2; 105(35): 12849–12854. Published online 2008 Aug 29. doi: 10.1073/pnas.0803640105
PMCID:
PMC2529034
ArticlePDF–1.1M
15.
Compound Genetic Ablation of Nidogen 1 and 2 Causes Basement Membrane Defects and Perinatal Lethality in Mice
Bernhard L. Bader, Neil Smyth, Sabine Nedbal, Nicolai Miosge, Anke Baranowsky, Sharada Mokkapati, Monzur Murshed, Roswitha Nischt
Mol Cell Biol. 2005 Aug; 25(15): 6846–6856. doi: 10.1128/MCB.25.15.6846-6856.2005
PMCID:
PMC1190363
ArticlePDF–2.0M
16.
Bifunctional promoter of type IV collagen COL4A5 and COL4A6 genes regulates the expression of α5 and α6 chains in a distinct cell-specific fashion
Malin Sund, Yohei Maeshima, Raghu Kalluri
Biochem J. 2005 May 1; 387(Pt 3): 755–761. Prepublished online 2004 Dec 15. Published online 2005 Apr 26. doi: 10.1042/BJ20041870
PMCID:
PMC1135006
ArticlePDF–191K
17.
Discoidin domain receptor 1 functions in axon extension of cerebellar granule neurons
Rupal S. Bhatt, Toshifumi Tomoda, Yin Fang, Mary E. Hatten
Genes Dev. 2000 Sep 1; 14(17): 2216–2228. doi: 10.1101/gad.821600
PMCID:
PMC316891
ArticlePDF–5.7M
18.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
ArticlePDF–3.4M
19.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
ArticlePDF–1.4M
20.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
ArticlePDF–118K

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