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Items: 15

1.
Assessment of community efforts to advance network-based prediction of protein–protein interactions
Xu-Wen Wang, Lorenzo Madeddu, Kerstin Spirohn, Leonardo Martini, Adriano Fazzone, Luca Becchetti, Thomas P. Wytock, István A. Kovács, Olivér M. Balogh, Bettina Benczik, Mátyás Pétervári, Bence Ágg, Péter Ferdinandy, Loan Vulliard, Jörg Menche, Stefania Colonnese, Manuela Petti, Gaetano Scarano, Francesca Cuomo, Tong Hao, Florent Laval, Luc Willems, Jean-Claude Twizere, Marc Vidal, Michael A. Calderwood, Enrico Petrillo, Albert-László Barabási, Edwin K. Silverman, Joseph Loscalzo, Paola Velardi, Yang-Yu Liu
Nat Commun. 2023; 14: 1582. Published online 2023 Mar 22. doi: 10.1038/s41467-023-37079-7
PMCID:
PMC10033937
AbstractArticlePDF–1.5M
2.
NudCL2 regulates cell migration by stabilizing both myosin-9 and LIS1 with Hsp90
Wenwen Chen, Wei Wang, Xiaoxia Sun, Shanshan Xie, Xiaoyang Xu, Min Liu, Chunxia Yang, Min Li, Wen Zhang, Wei Liu, Liangjing Wang, Tianhua Zhou, Yuehong Yang
Cell Death Dis. 2020 Jul; 11(7): 534. Published online 2020 Jul 14. doi: 10.1038/s41419-020-02739-9
PMCID:
PMC7360774
AbstractArticlePDF–3.3M
3.
A reference map of the human binary protein interactome
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood
Nature. Author manuscript; available in PMC 2020 Oct 8.
Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x
PMCID:
PMC7169983
AbstractArticlePDF–5.4M
4.
Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei
Domenico Fasci, Hugo van Ingen, Richard A. Scheltema, Albert J. R. Heck
Mol Cell Proteomics. 2018 Oct; 17(10): 2018–2033. Published online 2018 Jul 18. doi: 10.1074/mcp.RA118.000924
PMCID:
PMC6166682
AbstractArticlePDF–3.8M
5.
MURC/cavin-4 Is Co-Expressed with Caveolin-3 in Rhabdomyosarcoma Tumors and Its Silencing Prevents Myogenic Differentiation in the Human Embryonal RD Cell Line
Fiorella Faggi, Silvia Codenotti, Pietro Luigi Poliani, Manuela Cominelli, Nicola Chiarelli, Marina Colombi, Marika Vezzoli, Eugenio Monti, Federica Bono, Giovanni Tulipano, Chiara Fiorentini, Alessandra Zanola, Harriet P. Lo, Robert G. Parton, Charles Keller, Alessandro Fanzani
PLoS One. 2015; 10(6): e0130287. Published online 2015 Jun 18. doi: 10.1371/journal.pone.0130287
PMCID:
PMC4472524
AbstractArticlePDF–14M
6.
A genome-wide association meta-analysis of plasma Aß peptides concentrations in the elderly
V Chouraki, RFAG De Bruijn, J Chapuis, JC Bis, C Reitz, S Schraen, CA Ibrahim-Verbaas, B Grenier-Boley, C Delay, R Rogers, F Demiautte, A Mounier, AL Fitzpatrick, The Alzheimer’s Disease Neuroimaging Initiative, C Berr, J-F Dartigues, AG Uitterlinden, A Hofman, M Breteler, JT Becker, M Lathrop, N Schupf, A Alpérovitch, R Mayeux, CM van Duijn, L Buée, P Amouyel, OL Lopez, MA Ikram, C Tzourio, J-C Lambert
Mol Psychiatry. Author manuscript; available in PMC 2015 May 4.
Published in final edited form as: Mol Psychiatry. 2014 Dec; 19(12): 1326–1335. Published online 2014 Feb 18. doi: 10.1038/mp.2013.185
PMCID:
PMC4418478
AbstractArticlePDF–1.0M
7.
MURC/Cavin-4 facilitates recruitment of ERK to caveolae and concentric cardiac hypertrophy induced by α1-adrenergic receptors
Takehiro Ogata, Daisuke Naito, Naohiko Nakanishi, Yukiko K. Hayashi, Takuya Taniguchi, Kotaro Miyagawa, Tetsuro Hamaoka, Naoki Maruyama, Satoaki Matoba, Koji Ikeda, Hiroyuki Yamada, Hidemasa Oh, Tomomi Ueyama
Proc Natl Acad Sci U S A. 2014 Mar 11; 111(10): 3811–3816. Published online 2014 Feb 24. doi: 10.1073/pnas.1315359111
PMCID:
PMC3956167
AbstractArticlePDF–1.4M
8.
FSHD Myotubes with Different Phenotypes Exhibit Distinct Proteomes
Alexandra Tassin, Baptiste Leroy, Dalila Laoudj-Chenivesse, Armelle Wauters, Céline Vanderplanck, Marie-Catherine Le Bihan, Frédérique Coppée, Ruddy Wattiez, Alexandra Belayew
PLoS One. 2012; 7(12): e51865. Published online 2012 Dec 18. doi: 10.1371/journal.pone.0051865
PMCID:
PMC3525578
AbstractArticlePDF–1.3M
9.
Interactions of Pathological Hallmark Proteins: TUBULIN POLYMERIZATION PROMOTING PROTEIN/p25, β-AMYLOID, AND α-SYNUCLEIN
Judit Oláh, Orsolya Vincze, Dezső Virók, Dóra Simon, Zsolt Bozsó, Natália Tőkési, István Horváth, Emma Hlavanda, János Kovács, Anna Magyar, Mária Szűcs, Ferenc Orosz, Botond Penke, Judit Ovádi
J Biol Chem. 2011 Sep 30; 286(39): 34088–34100. Published online 2011 Aug 8. doi: 10.1074/jbc.M111.243907
PMCID:
PMC3190826
AbstractArticlePDF–5.7M
10.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
11.
Molecular Genetic and Functional Characterization Implicate Muscle-Restricted Coiled-Coil Gene (MURC) as a Causal Gene for Familial Dilated Cardiomyopathy
Gabriela Rodriguez, Tomomi Ueyama, Takehiro Ogata, Grazyna Czernuszewicz', Yanli Tan, Gerald W. Dorn, II, Roberta Bogaev, Katsuya Amano, Hidemasa Oh, Hiroaki Matsubara, James T. Willerson, Ali J. Marian
Circ Cardiovasc Genet. Author manuscript; available in PMC 2012 Aug 1.
Published in final edited form as: Circ Cardiovasc Genet. 2011 Aug 1; 4(4): 349–358. Published online 2011 Jun 3. doi: 10.1161/CIRCGENETICS.111.959866
PMCID:
PMC3157556
AbstractArticlePDF–1.2M
12.
MURC/Cavin-4 and cavin family members form tissue-specific caveolar complexes
Michele Bastiani, Libin Liu, Michelle M. Hill, Mark P. Jedrychowski, Susan J. Nixon, Harriet P. Lo, Daniel Abankwa, Robert Luetterforst, Manuel Fernandez-Rojo, Michael R. Breen, Steven P. Gygi, Jorgen Vinten, Piers J. Walser, Kathryn N. North, John F. Hancock, Paul F. Pilch, Robert G. Parton
J Cell Biol. 2009 Jun 29; 185(7): 1259–1273. doi: 10.1083/jcb.200903053
PMCID:
PMC2712963
AbstractArticlePDF–5.5M
13.
SDPR induces membrane curvature and functions in the formation of caveolae
Carsten G. Hansen, Nicholas A. Bright, Gillian Howard, Benjamin J. Nichols
Nat Cell Biol. Author manuscript; available in PMC 2010 Jan 1.
Published in final edited form as: Nat Cell Biol. 2009 Jul; 11(7): 807–814. Published online 2009 Jun 14. doi: 10.1038/ncb1887
PMCID:
PMC2712677
AbstractArticlePDF–3.5M
14.
MURC, a Muscle-Restricted Coiled-Coil Protein That Modulates the Rho/ROCK Pathway, Induces Cardiac Dysfunction and Conduction Disturbance
Takehiro Ogata, Tomomi Ueyama, Koji Isodono, Masashi Tagawa, Naofumi Takehara, Tsuneaki Kawashima, Koichiro Harada, Tomosaburo Takahashi, Tetsuo Shioi, Hiroaki Matsubara, Hidemasa Oh
Mol Cell Biol. 2008 May; 28(10): 3424–3436. Published online 2008 Mar 10. doi: 10.1128/MCB.02186-07
PMCID:
PMC2423172
AbstractArticlePDF–2.0M
15.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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