PMC Links for Nucleotide (Select 682117612) - PMC

Muhammad Yasir, A. Keith Turner, Sarah Bastkowski, David Baker, Andrew J. Page, Andrea Telatin, Minh-Duy Phan, Leigh Monahan, George M. Savva, Aaron Darling, Mark A. Webber, Ian G. Charles

Genome Res. 2020 Feb; 30(2): 239–249. doi: 10.1101/gr.254391.119

PMCID:: PMC7050523

Abstract Article PDF–8.0M

Select item 69896004.

Short-Term Adaptation Modulates Anaerobic Metabolic Flux to Succinate by Activating ExuT, a Novel D-Glucose Transporter in Escherichia coli

Hyun Ju Kim, Haeyoung Jeong, Sang Jun Lee

Front Microbiol. 2020; 11: 27. Published online 2020 Jan 23. doi: 10.3389/fmicb.2020.00027

PMCID:: PMC6989600

Abstract Article PDF–2.8M

Select item 69544335.

Point mutations in topoisomerase I alter the mutation spectrum in E. coli and impact the emergence of drug resistance genotypes

Amit Bachar, Elad Itzhaki, Shmuel Gleizer, Melina Shamshoom, Ron Milo, Niv Antonovsky

Nucleic Acids Res. 2020 Jan 24; 48(2): 761–769. Published online 2019 Nov 28. doi: 10.1093/nar/gkz1100

PMCID:: PMC6954433

Abstract Article PDF–1.7M

Select item 69418946.

Mutations that improve efficiency of a weak-link enzyme are rare compared to adaptive mutations elsewhere in the genome

Andrew B Morgenthaler, Wallis R Kinney, Christopher C Ebmeier, Corinne M Walsh, Daniel J Snyder, Vaughn S Cooper, William M Old, Shelley D Copley

eLife. 2019; 8: e53535. Published online 2019 Dec 9. doi: 10.7554/eLife.53535

PMCID:: PMC6941894

Abstract Article PDF–2.8M

Select item 69252577.

Evolution of satellite plasmids can prolong the maintenance of newly acquired accessory genes in bacteria

Xue Zhang, Daniel E. Deatherage, Hao Zheng, Stratton J. Georgoulis, Jeffrey E. Barrick

Nat Commun. 2019; 10: 5809. Published online 2019 Dec 20. doi: 10.1038/s41467-019-13709-x

PMCID:: PMC6925257

Abstract Article PDF–1.6M

Select item 68285408.

Adaptation to mutational inactivation of an essential gene converges to an accessible suboptimal fitness peak

João V Rodrigues, Eugene I Shakhnovich

eLife. 2019; 8: e50509. Published online 2019 Oct 1. doi: 10.7554/eLife.50509

PMCID:: PMC6828540

Abstract Article PDF–2.2M

Select item 65991229.

Deletion of the major Escherichia coli multidrug transporter AcrB reveals transporter plasticity and redundancy in bacterial cells

Noémie Alon Cudkowicz, Shimon Schuldiner

PLoS One. 2019; 14(6): e0218828. Published online 2019 Jun 28. doi: 10.1371/journal.pone.0218828

PMCID:: PMC6599122

Abstract Article PDF–1.4M

Select item 656131910.

Proteomic Profiling, Transcription Factor Modeling, and Genomics of Evolved Tolerant Strains Elucidate Mechanisms of Vanillin Toxicity in Escherichia coli

Calum A. Pattrick, Joseph P. Webb, Jeffrey Green, Roy R. Chaudhuri, Mark O. Collins, David J. Kelly

mSystems. 2019 Jul-Aug; 4(4): e00163-19. Published online 2019 Jun 11. doi: 10.1128/mSystems.00163-19

PMCID:: PMC6561319

Abstract Article PDF–3.5M

Select item 644240611.

Identification of functional butanol-tolerant genes from Escherichia coli mutants derived from error-prone PCR-based whole-genome shuffling

Xueting He, Tingli Xue, Yuanyuan Ma, Junyan Zhang, Zhiquan Wang, Jiefang Hong, Lanfeng Hui, Jianjun Qiao, Hao Song, Minhua Zhang

Biotechnol Biofuels. 2019; 12: 73. Published online 2019 Apr 1. doi: 10.1186/s13068-019-1405-z

PMCID:: PMC6442406

Abstract Article PDF–2.5M

Select item 641586912.

The genetic basis for adaptation of model-designed syntrophic co-cultures

Colton J. Lloyd, Zachary A. King, Troy E. Sandberg, Ying Hefner, Connor A. Olson, Patrick V. Phaneuf, Edward J. O’Brien, Jon G. Sanders, Rodolfo A. Salido, Karenina Sanders, Caitriona Brennan, Gregory Humphrey, Rob Knight, Adam M. Feist

PLoS Comput Biol. 2019 Mar; 15(3): e1006213. Published online 2019 Mar 1. doi: 10.1371/journal.pcbi.1006213

PMCID:: PMC6415869

Abstract Article PDF–3.9M

Select item 641213213.

The y-ome defines the 35% of Escherichia coli genes that lack experimental evidence of function

Sankha Ghatak, Zachary A King, Anand Sastry, Bernhard O Palsson

Nucleic Acids Res. 2019 Mar 18; 47(5): 2446–2454. Published online 2019 Jan 30. doi: 10.1093/nar/gkz030

PMCID:: PMC6412132

Abstract Article PDF–1.2M

Select item 641109714.

Coupling S-adenosylmethionine–dependent methylation to growth: Design and uses

Hao Luo, Anne Sofie L. Hansen, Lei Yang, Konstantin Schneider, Mette Kristensen, Ulla Christensen, Hanne B. Christensen, Bin Du, Emre Özdemir, Adam M. Feist, Jay D. Keasling, Michael K. Jensen, Markus J. Herrgård, Bernhard O. Palsson

PLoS Biol. 2019 Mar; 17(3): e2007050. Published online 2019 Mar 11. doi: 10.1371/journal.pbio.2007050

PMCID:: PMC6411097

Abstract Article PDF–1.4M

Select item 638490615.

Mutations in sigma 70 transcription factor improves expression of functional eukaryotic membrane proteins in Escherichia coli

Pablo Emiliano Tomatis, Marco Schütz, Elina Umudumov, Andreas Plückthun

Sci Rep. 2019; 9: 2483. Published online 2019 Feb 21. doi: 10.1038/s41598-019-39492-9

PMCID:: PMC6384906

Abstract Article PDF–4.1M

Select item 638180216.

Effects of sub-lethal concentrations of copper ammonium acetate, pyrethrins and atrazine on the response of Escherichia coli to antibiotics

Hyunwoo Jun, Brigitta Kurenbach, Jack Aitken, Alibe Wasa, Mitja N.P. Remus-Emsermann, William Godsoe, Jack A. Heinemann

Version 1. F1000Res. 2019; 8: 32. Published online 2019 Jan 9. doi: 10.12688/f1000research.17652.1

PMCID:: PMC6381802

Abstract Article PDF–2.4M

Select item 629603317.

Reframing gene essentiality in terms of adaptive flexibility

Gabriela I. Guzmán, Connor A. Olson, Ying Hefner, Patrick V. Phaneuf, Edward Catoiu, Lais B. Crepaldi, Lucas Goldschmidt Micas, Bernhard O. Palsson, Adam M. Feist

BMC Syst Biol. 2018; 12: 143. Published online 2018 Dec 17. doi: 10.1186/s12918-018-0653-z