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Select item 65937281.

Helicobacter pylori infection alters gastric and tongue coating microbial communities

Yubin Zhao, Xuefeng Gao, Jiaxuan Guo, Dongbao Yu, Ying Xiao, Huijie Wang, Yuchan Li

Helicobacter. 2019 Apr; 24(2): e12567. Published online 2019 Feb 7. doi: 10.1111/hel.12567

PMCID:: PMC6593728

Abstract Article PDF–1.1M

Select item 65670032.

Dysbiosis Disrupts Gut Immune Homeostasis and Promotes Gastric Diseases

Devinder Toor, Mishi Kaushal Wasson, Prashant Kumar, G. Karthikeyan, Naveen Kumar Kaushik, Chhavi Goel, Sandhya Singh, Anil Kumar, Hridayesh Prakash

Int J Mol Sci. 2019 May; 20(10): 2432. Published online 2019 May 16. doi: 10.3390/ijms20102432

PMCID:: PMC6567003

Abstract Article PDF–1.0M

Select item 65554023.

Deciphering bacterial epigenomes using modern sequencing technologies

John Beaulaurier, Eric E. Schadt, Gang Fang

Nat Rev Genet. Author manuscript; available in PMC 2019 Sep 1.

Published in final edited form as: Nat Rev Genet. 2019 Mar; 20(3): 157–172. doi: 10.1038/s41576-018-0081-3

PMCID:: PMC6555402

Abstract Article PDF–565K

Select item 65442164.

Analysis of gut microbiota and the effect of lauric acid against necrotic enteritis in Clostridium perfringens and Eimeria side-by-side challenge model

Wen-Yuan Yang, Yuejia Lee, Hsinyi Lu, Chung-Hsi Chou, Chinling Wang

PLoS One. 2019; 14(5): e0205784. Published online 2019 May 31. doi: 10.1371/journal.pone.0205784

PMCID:: PMC6544216

Abstract Article PDF–3.2M

Select item 65091905.

Alzheimer’s Disease Microbiome Is Associated with Dysregulation of the Anti-Inflammatory P-Glycoprotein Pathway

John P. Haran, Shakti K. Bhattarai, Sage E. Foley, Protiva Dutta, Doyle V. Ward, Vanni Bucci, Beth A. McCormick

mBio. 2019 May-Jun; 10(3): e00632-19. Published online 2019 May 7. doi: 10.1128/mBio.00632-19

PMCID:: PMC6509190

Abstract Article PDF–5.1M

Select item 65030056.

Probing Clostridium difficile Infection in Complex Human Gut Cellular Models

Blessing O. Anonye, Jack Hassall, Jamie Patient, Usanee Detamornrat, Afnan M. Aladdad, Stephanie Schüller, Felicity R. A. J. Rose, Meera Unnikrishnan

Front Microbiol. 2019; 10: 879. Published online 2019 Apr 30. doi: 10.3389/fmicb.2019.00879

PMCID:: PMC6503005

Abstract Article PDF–3.9M

Select item 64974487.

A Method for Isolation and Proteomic Analysis of Outer Membrane Vesicles from Fecal Samples by LC-MS/MS

Jing Wu, Mingrui An, Jianhui Zhu, Zhijing Tan, Grace Y. Chen, Ryan W Stidham, David M. Lubman

J Proteomics Bioinform. Author manuscript; available in PMC 2020 Mar 18.

Published in final edited form as: J Proteomics Bioinform. 2019; 12(2): 38–42. Published online 2019 Mar 18. doi: 10.4172/0974-276X.1000494

PMCID:: PMC6497448

Abstract Article PDF–571K

Select item 64918368.

First Report of Integrative Conjugative Elements in Riemerella anatipestifer Isolates From Ducks in China

Dekang Zhu, Jianbang Wan, Zhishuang Yang, Jinge Xu, Mingshu Wang, Renyong Jia, Shun Chen, Mafeng Liu, Xinxin Zhao, Qiao Yang, Ying Wu, Shaqiu Zhang, Yunya Liu, Ling Zhang, Yanling Yu, Xiaoyue Chen, Anchun Cheng

Front Vet Sci. 2019; 6: 128. Published online 2019 Apr 24. doi: 10.3389/fvets.2019.00128

PMCID:: PMC6491836

Abstract Article PDF–5.7M

Select item 64826599.

Cancer Immune Checkpoint Inhibitor Therapy and the Gut Microbiota

Arthur E. Frankel, Sachin Deshmukh, Amit Reddy, John Lightcap, Maureen Hayes, Steven McClellan, Seema Singh, Brooks Rabideau, T. Grant Glover, Bruce Roberts, Andrew Y. Koh

Integr Cancer Ther. 2019; 18: 1534735419846379. Published online 2019 Apr 23. doi: 10.1177/1534735419846379

PMCID:: PMC6482659

Abstract Article PDF–567K

Select item 643763810.

Synbiotic-driven improvement of metabolic disturbances is associated with changes in the gut microbiome in diet-induced obese mice

Xinxin Ke, Alesia Walker, Sven-Bastiaan Haange, Ilias Lagkouvardos, Yuwen Liu, Philippe Schmitt-Kopplin, Martin von Bergen, Nico Jehmlich, Xin He, Thomas Clavel, Peter C.K. Cheung

Mol Metab. 2019 Apr; 22: 96–109. Published online 2019 Feb 5. doi: 10.1016/j.molmet.2019.01.012

PMCID:: PMC6437638

Abstract Article PDF–5.3M

Select item 643635211.

Identification of a Fifth Antibacterial Toxin Produced by a Single Bacteroides fragilis Strain

Andrew M. Shumaker, Valentina Laclare McEneany, Michael J. Coyne, Pamela A. Silver, Laurie E. Comstock

J Bacteriol. 2019 Apr 15; 201(8): e00577-18. Prepublished online 2019 Jan 28. Published online 2019 Mar 26. doi: 10.1128/JB.00577-18

PMCID:: PMC6436352

Abstract Article PDF–2.4M

Select item 643533412.

Functional assignment of multiple catabolic pathways for D-apiose

Michael S. Carter, Xinshuai Zhang, Hua Huang, Jason T. Bouvier, Brian San Francisco, Matthew W. Vetting, Nawar Al-Obaidi, Jeffrey B. Bonanno, Agnidipta Ghosh, Rémi G. Zallot, Harvey M. Andersen, Steven C. Almo, John A. Gerlt

Nat Chem Biol. Author manuscript; available in PMC 2019 Mar 26.

Published in final edited form as: Nat Chem Biol. 2018 Jul; 14(7): 696–705. Published online 2018 Jun 4. doi: 10.1038/s41589-018-0067-7

PMCID:: PMC6435334

Abstract Article PDF–2.2M

Select item 642874013.

Inferring Bacterial Infiltration in Primary Colorectal Tumors From Host Whole Genome Sequencing Data

Man Guo, Er Xu, Dongmei Ai

Front Genet. 2019; 10: 213. Published online 2019 Mar 15. doi: 10.3389/fgene.2019.00213

PMCID:: PMC6428740

Abstract Article PDF–4.6M

Select item 642490914.

Identification of phenol- and p-cresol-producing intestinal bacteria by using media supplemented with tyrosine and its metabolites

Yuki Saito, Tadashi Sato, Koji Nomoto, Hirokazu Tsuji

FEMS Microbiol Ecol. 2018 Sep; 94(9): fiy125. Published online 2018 Jun 22. doi: 10.1093/femsec/fiy125

Correction in:: FEMS Microbiol Ecol. 2019 Apr; 95(4): fiy206.

Correction in:: FEMS Microbiol Ecol. 2020 Jan; 96(1): fiz195.

PMCID:: PMC6424909

Abstract Article PDF–2.4M

Select item 642442315.

Identification of the microbial diversity after fecal microbiota transplantation therapy for chronic intractable constipation using 16s rRNA amplicon sequencing

Tadashi Ohara

PLoS One. 2019; 14(3): e0214085. Published online 2019 Mar 19. doi: 10.1371/journal.pone.0214085

PMCID:: PMC6424423

Abstract Article PDF–1.3M

Select item 641436916.

Highly Specific Sewage-Derived Bacteroides Quantitative PCR Assays Target Sewage-Polluted Waters

Shuchen Feng, Sandra L. McLellan

Appl Environ Microbiol. 2019 Mar 15; 85(6): e02696-18. Prepublished online 2019 Jan 11. Published online 2019 Mar 6. doi: 10.1128/AEM.02696-18

PMCID:: PMC6414369

Abstract Article PDF–1.5M

Select item 641213317.

Amino acid based de Bruijn graph algorithm for identifying complete coding genes from metagenomic and metatranscriptomic short reads

Jiemeng Liu, Qichao Lian, Yamao Chen, Ji Qi

Nucleic Acids Res. 2019 Mar 18; 47(5): e30. Published online 2019 Jan 18. doi: 10.1093/nar/gkz017

PMCID:: PMC6412133

Abstract Article PDF–1.4M

Select item 641108518.

Virome diversity correlates with intestinal microbiome diversity in adult monozygotic twins

J. Leonardo Moreno-Gallego, Shao-Pei Chou, Sara C. Di Rienzi, Julia K. Goodrich, Timothy Spector, Jordana T. Bell, Nicholas Youngblut, Ian Hewson, Alejandro Reyes, Ruth E. Ley

Cell Host Microbe. Author manuscript; available in PMC 2020 Feb 13.

Published in final edited form as: Cell Host Microbe. 2019 Feb 13; 25(2): 261–272.e5. doi: 10.1016/j.chom.2019.01.019

PMCID:: PMC6411085

Abstract Article PDF–2.5M

Select item 640451919.

Sources and persistence of fecal indicator bacteria and Bacteroidales in sand as measured by culture-based and culture-independent methods: A case study at Santa Monica Pier, California

Kathryn B Mika, Karina A Chavarria, Greg Imamura, Chay Tang, Robert Torres, Jennifer A. Jay

Water Air Soil Pollut. Author manuscript; available in PMC 2019 Mar 7.

Published in final edited form as: Water Air Soil Pollut. 2017 Apr; 228: 124. Published online 2017 Mar 6. doi: 10.1007/s11270-017-3291-y

PMCID:: PMC6404519

Abstract Article PDF–2.5M

Select item 640427420.

Early gut microbiota signature of aGvHD in children given allogeneic hematopoietic cell transplantation for hematological disorders

Elena Biagi, Daniele Zama, Simone Rampelli, Silvia Turroni, Patrizia Brigidi, Clarissa Consolandi, Marco Severgnini, Eleonora Picotti, Pietro Gasperini, Pietro Merli, Nunzia Decembrino, Marco Zecca, Simone Cesaro, Maura Faraci, Arcangelo Prete, Franco Locatelli, Andrea Pession, Marco Candela, Riccardo Masetti

BMC Med Genomics. 2019; 12: 49. Published online 2019 Mar 7. doi: 10.1186/s12920-019-0494-7

PMCID:: PMC6404274

Abstract Article PDF–1.1M

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This sample represents a MAG derived from the metagenomic sample SAMN17312188

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