Effects of Cot S400 mutation on IKK complex activation and association. (A and B) Activation of cotransfected (A) or endogenous (B) IKK by wild-type (WT) or SA(2) Cot. 293T cells were transfected with 5 μg of empty vector or the indicated Cot constructs; samples shown in panel A were also transfected with 5 μg of Flag-tagged IKKα or 0.1 μg of IKKβ. Twenty hours after transfection cells were harvested, lysed, and subjected to immunoprecipitation with either anti-Flag antibody M2 (A) or anti-IKKγ (B). IKK kinase assays were then carried out as described in Materials and Methods, with recombinant IκBα as an exogenous substrate. A small aliquot of each lysate was assayed by Western blot for expression of the Cot constructs (lower gels). Equal expression and immunoprecipitation of IKKα were confirmed by reprobing the kinase assay blot with anti-Flag antibody (data not shown). As IKKβ displays higher levels of kinase activity than IKKα, much lower quantities of the former were transfected, precluding detection of the autophosphorylated kinase (A, upper right gel). (C) 293T cells were cotransfected with 5 μg of Flag-tagged IKKα and the indicated Cot constructs. Twenty hours after transfection cells were harvested, lysed, and subjected to immunoprecipitation with anti-Flag antibody. After SDS-PAGE and Western blotting, membranes were probed with anti-Myc antibody 9E10 to reveal coprecipitated Cot. IP's, immunoprecipitates; FL, full length; Autorad., autoradiography; WCL, whole-cell lysates.