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Report for CCDS53542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53542.1 Public Homo sapiens 10 DUSP13A 24 110 108 CCDS HistoryNCBI Gene:128854680Re-query CCDS DB by CCDS ID:53542.1Re-query CCDS DB by GeneID:128854680

Public Note for CCDS 53542.1
This CCDS representation is supported by the mRNAs AY674051.1 and AY040091.1. The transcript is a candidate for nonsense-mediated mRNA decay (NMD); however, the protein is represented based on demonstration of the endogenous protein in mouse tissues in PMID:15252030, and because there are no non-NMD transcripts that can encode this protein in either human and mouse.

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 53542.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372702.7 ENSP00000361787.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372702.7Link to Ensembl Protein Viewer:ENSP00000361787.2Re-query CCDS DB by Nucleotide ID:ENST00000372702Re-query CCDS DB by Protein ID:ENSP00000361787
Original member NCBI NM_001007271.2 NP_001007272.1 Updated not alive Link to Nucleotide Sequence:NM_001007271.2Link to Protein Sequence:NP_001007272.1Re-query CCDS DB by Nucleotide ID:NM_001007271Re-query CCDS DB by Protein ID:NP_001007272
Current member NCBI NM_001007271.3 NP_001007272.1 Accepted alive Link to Nucleotide Sequence:NM_001007271.3Link to Protein Sequence:NP_001007272.1Re-query CCDS DB by Nucleotide ID:NM_001007271Re-query CCDS DB by Protein ID:NP_001007272Link to BLAST:NP_001007272.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007272.1 188 Q6B8I1-1 188 100% 0 0

Chromosomal Locations for CCDS 53542.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 75105669 75105868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75107992 75108209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75109009 75109157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGGCTGAGACCTCTCTCCCAGAGCTGGGGGGAGAGGACAAAGCCACGCCTTGCCCCAGCATCCTGGAGC
TGGAGGAGCTCCTGCGGGCAGGGAAGTCTTCTTGCAGCCGTGTGGACGAAGTTTGGCCCAACCTTTTCAT
AGGAGATGCGGCCACGGCAAACAACCGCTTTGAGCTGTGGAAGCTGGGCATCACCCACGTGCTGAACGCC
GCCCACAAGGGCCTCTACTGTCAGGGCGGCCCTGACTTCTACGGCAGCAGTGTGAGCTACCTGGGGGTGC
CAGCCCACGACCTCCCTGATTTTGACATCAGTGCCTACTTCTCCTCTGCGGCTGACTTCATCCACCGTGC
CCTCAACACGCCTGGGGCCAAGGTCCTGGTGCACTGTGTGGTGGGCGTGAGCCGCTCTGCCACGCTGGTC
CTGGCCTACCTCATGCTGCACCAGCGGCTGTCCCTGCGCCAGGCGGTGATCACCGTGAGGCAGCACCGAT
GGGTCTTCCCCAACCGAGGCTTCCTGCACCAGCTCTGCAGGCTGGACCAGCAACTGCGGGGTGCCGGCCA
GAGCTGA

Translation (188 aa):
MAETSLPELGGEDKATPCPSILELEELLRAGKSSCSRVDEVWPNLFIGDAATANNRFELWKLGITHVLNA
AHKGLYCQGGPDFYGSSVSYLGVPAHDLPDFDISAYFSSAADFIHRALNTPGAKVLVHCVVGVSRSATLV
LAYLMLHQRLSLRQAVITVRQHRWVFPNRGFLHQLCRLDQQLRGAGQS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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