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  Haplotype Specifications

      Welcome to the development area for haplotype specifications in dbSNP. Here you will find our latest designs and proposed specifications for submitting, databasing, and exchanging haplotype information. These specifications are a prototype based on available haplotype data for the human HLA gene region where traditional serological alleles have been defined at the molecular (SNP) level. We welcome your suggestions and feedback as we work with the genome centers, academic institutions and our international partners in developing a uniform standard for the description of haplotype data. Please send your comments to snp-admin@ncbi.nlm.nih.gov.

Data Exchange Formats
 
   
  ASN.1 definition for haplotype exchange set
         MS Word document
         PDF format
   
Data Submission Formats
 
   
  XML DTD for data submission format
         NCBI Haplotype Set XML DTD (NHS.dtd)
         Referenced general NCBI entities (NCBI_Entity.mod)
         Haplotype-specific module of DTD (NHS.mod)
   
Proposed relational schema for haplotype data
 
   
  Haplotype Schema
   
  Schema in PNG format
   
Prototype display
 
   
  Haplotype Set report in dbSNP
  Individual Haplotype report in dbSNP

 

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION:
FAQ | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Main Search |Batch Query | By Submitter |New Batches | Method | Population | Publication
| Chromosome Report | Batch |Locus Info | Free Form | Easy Form | Between Marker
HAPLOTYPE: Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

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Revised: October 28, 2004 11:32 AM.