| Name | Page | Value |
|---|---|---|
| pg | All | 0, 1, or 2 for pages first, second, or third page, respectively. |
| species | first | The species or tax ID to be searched. This is either the tax ID in an integer form or the name of the species followed by an underscore and the tax id. For example, human_9606 and 9606 are equivalent. |
| tax_id | first | Same as species. Ignored if species is specified. |
| RSPick | first | 1 if selecting SNPs by RS numbers, 2 if selecting a gene by name or ID, empty or 0 otherwise. |
| RSlist | first | A list of rs number delimited by spaces, commas, or newlines. This is used only if RSPick is 1 |
| Gene | first | The name or NCBI ID of a gene. This is used only if RSPick is 2. |
| chr | first | Chromosome. This can be a number or a string such as X, Y, Un, or MT. This is used only if RSPick is empty or 0. |
| rng | first | Range of SNPs to be selected, valid values are C and F. F specifies a range and C specifies that the range is centered around an RS number or base pair. This is used only if RSPick is empty or 0. See below for more details |
| rngspec | first | Values are chr_pos or rs If chr_pos then the range will be selected by number of base pairs within the chromosome, otherwise it is a range between two RS numbers or an within a specified number of base pairs of an RS, depending on the value of rng. This is used only if RSPick is empty or 0. |
| from | first | This is the position in base pairs within the chromosome or an RS number for the beginning or center of the range, depending on the value of rng (see above.) RS numbers can optionally be preceeded with 'rs' and base pair numbers may optionally end with K or M for kilo or mega base pairs. This is used only if RSPick is empty or zero. |
| to | first | If rng is F this is the ending RS number or base pair, using the format as from above. If rng is C this is the number of base pairs from the centered position specified in from above. This is used only if RSPick empty or 0. |
| weight1 | first | 1 if selecting weight 1 snps only, omitted otherwise. This is used only if RSPick is not 1. |
| trusnp | first | 1 if selecting SNPs only, omitted otherwise. This is used only if RSPick is not 1. |
| diall | first | 1 if selecting diallelic SNPs only, omitted otherwise. This is used only if RSPick is not 1. |
| snpfnc | first | SNP Function. An integer representing the SNP function. Multiple values can be selected, but they must be separate name=value pairs. For example snpfnc=2&snpfnc=3&snpfnc=4, etc. This is optional and is used only if RSPick is not 1. |
| founders | second | 1 if selecting founders only within a pedigree, omitted otherwise. |
| pop | second | For Human (9606): Population and type. A string consisting of the
integer pop_id from the Population table
followed by an exclamation point (!) and the
integer population
group. The population groups are: 0 - Undefined 1 - African American 2 - Asian 3 - European 4 - Global 5 - Hispanic 6 - Native American 7 - North African/Middle Eastern 8 - Sub-Saharan African 9 - Tissue For non-human species this is the integer pop_id only. Multiple name=value pairs may be used. |
| ind | second | For non-human only. submitted_ind_id from the SubInd table. Multiple name=value pairs may be used. |
| type | third | The value is xml for downloading xml, text for tab separated text, and empty or omitted for retrieving html. |
| api | third | If the value is 1 then the Content-type will be text/xml for xml and text/plain for text. If this is omitted or the value is 0 then the content-type will be application/octet-stream. The purpose of this is to direct the browser to save the output to a file. |
| indGty | third | If the value is no then individuals, genotypes, and pedigrees are omitted. This is used only when type is xml, |