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Reference SNP (refSNP) Cluster Report: rs10218493                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:119/151
Map to Genome Build:108/Weight 1
Validation Status:byCluster
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G/T (FWD)
Allele Origin:
Ancestral Allele:Not available
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:A=0.3110/39053 (TOPMED)
HGVS Names
  • CM000663.2:g.10904G>A
  • CM000663.2:g.10904G>T
  • NC_000001.10:g.10904G>A
  • NC_000001.11:g.10904G>A
  • NC_000001.11:g.10904G>T
  • NR_046018.2:n.-970G>A
  • NR_046018.2:n.-970G>T
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss14085932 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs10218493 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss14085932WUGSC_SSAHASNP|chr1.NT_077402.1_767fwd/TA/Gacacatgctaccgcgtccaggggtggaggctggcgcaggcgcagagaggcgcaccgcgcc11/05/0311/22/03119Genomicunknown
ss23121396WUGSC_SSAHASNP|WUGSC_WUchr7_SNPS_200403.chr1.NT_077402.1_767fwd/TA/Gacacatgctaccgcgtccaggggtggaggctggcgcaggcgcagagaggcgcaccgcgcc03/22/0403/22/04126Genomicunknown
ss2750600991GNOMAD|rs10218493fwd/A/Gtgctaccgcgtccaggggtggaggctggcgcaggcgcagagaggcgcacc05/17/1705/17/17151Genomicunknown
ss2986141222SWEGEN|NC_000001.10:g.10904G>Afwd/A/Gtgctaccgcgtccaggggtggaggctggcgcaggcgcagagaggcgcacc05/30/1705/30/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs10218493|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G/T'|mol=Genomic|build=151
 TAAccctaac cctaacccta accccaaccc caaccccaac cccaacccca accccaaccc
 taacccctaa ccctaaccct aaccctaccc taaccctaac cctaacccta accctaaccc
 taacccctaa cccctaaccc taaccctaac cctaacccta accctaaccc taacccctaa
 ccctaaCCCT AACCCTAacc ctcgcggtac cctcagccgg cccgcccgcc cgggtctgac
 ctgaggagaa ctgtgctccg ccttcagagt accaccgaaa tctgtgcaga ggacaacgca
 gctccgccct cgcggtgctc tccgggtctg tgctgaggag aacgcaactc cgccggcgca
 ggcgcagaga ggcgcgccgc gccggcgcag gcgcagacac atgctagcgc gtcggggtgg
 aggcgtggcg caggcgcaga gaggcgcgcc gcgccggcgc aggcgcagag acacatgcta
 ccgcgtccag gggtggaggc
 D
 tggcgcaggc gcagagaggc gcaccgcgcc ggcgcaggcg cagagacaca tgctagcgcg
 tccaggggtg gaggcgtggc gcaggcgcag agacgcaagc ctacgggcgg gggttggggg
 ggcgtgtgtt gcaggagcaa agtcgcacgg cgccgggctg gggcgggggg agggtggcgc
 cgtgcacgcg cagaaactca cgtcacggtg gcgcggcgca gagacgggta gaacctcagt
 aatccgaaaa gccgggatcg accgcccctt gcttgcagcc gggcactaca ggacccgctt
 gctcacggtg ctgtgccagg gcgccccctg ctggcgacta gggcaactgc agggctctct
 tgcttagagt ggtggccagc gccccctgct ggcgccgggg cactgcaggg ccctcttgct
 tactgtatag tggtggcacg ccgcctgctg gcagctaggg acattgcagg gtcctcttgc
 tcaaggtgta gtggcagcac

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_077402
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceG/G
HWPG
ss14085932ENSEMBL_Watson 2IG1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterUNKNOWNUNKNOWNUNKNOWN