NCBI
dbSNP
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This legacy RefSNP page contains old data from dbSNP build 151 (March 2018) and is no longer maintained. Please update your links and bookmarks to use the re-designed RefSNP Report page.
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Reference SNP (refSNP) Cluster Report: rs11202607                 ** With Benign allele **
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:120/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqWith1000GenomeData
Citation:PubMedLitVarNEW
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (FWD)
Allele Origin:
Ancestral Allele:C
Variation Viewer:link to VariationViewer
Clinical Significance:With Benign allele [ClinVar]
MAF/MinorAlleleCount:T=0.0789/395 (1000 Genomes)
T=0.0690/8658 (TOPMED)
HGVS Names
  • CM000672.2:g.87967657C>T
  • NC_000010.10:g.89727414C>T
  • NC_000010.11:g.87967657C>T
  • NG_007466.2:g.109219C>T
  • NM_000314.4:c.*2185C>T
  • NM_000314.6:c.*2185C>T
  • NM_001304717.2:c.*2185C>T
  • NM_001304718.1:c.*2185C>T
  • NW_013171807.1:g.183446C>T
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss280714863 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs11202607 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss16083271SC_SNP|NT_030059.11_8475930fwd/BC/Ttgttacaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaacatgg11/18/0311/22/03120Genomicunknown
ss18439187SC_SNP|SC-CHR9-12_NA11321-200402.chr10.NT_030059.11_8475930fwd/BC/Ttgttacaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaacatgg02/20/0403/04/04120Genomicunknown
ss38349857EGP_SNPS|PTEN-106162byFreqfwd/BC/Ttgttacaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaacatgg07/07/0511/02/06126Genomicunknown
ss61705810SI_EXO|NT_030059.12_8475930byFreqfwd/BC/Ttgttacaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaacatgg07/11/0603/31/08127Genomicunknown
ss66926550ILLUMINA|HumanHap550v1.1_rs11202607fwd/BC/Ttgttacaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaacatgg11/14/0611/14/06127Genomicunknown
ss67079284ILLUMINA|HumanHap650Yv1.0_rs11202607fwd/BC/Ttgttacaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaacatgg11/14/0611/14/06127Genomicunknown
ss68103670ILLUMINA|HumanHap250Sv1.0_rs11202607fwd/BC/Ttgttacaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaacatgg12/06/0612/07/06127Genomicunknown
ss70524471ILLUMINA|HumanHap550v3.0__rs11202607rev/TA/Gccatgttacatattggaacaataaagttacttttaatatgcggtgcccgaaattgtaaca04/20/0703/30/08130Genomicunknown
ss71054118ILLUMINA|HumanHap650Yv3.0_rs11202607fwd/BC/Ttgttacaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaacatgg04/23/0704/23/07127Genomicunknown
ss74917282ILLUMINA|ILMN_Human_1M_rs11202607fwd/BC/Ttgttacaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaacatgg08/28/0708/29/07129Genomicunknown
ss85086931KRIBB_YJKIM|KHS895036fwd/BC/Ttgttacaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaacatgg12/04/0712/08/07130Genomicunknown
ss152963051ILLUMINA|Human610_Quadv1_B_rs11202607-126_T_R_1502089623rev/TA/Gccatgttacatattggaacaataaagttacttttaatatgcggtgcccgaaattgtaaca06/18/0906/19/09131Genomicunknown
ss159170354ILLUMINA|Human660W-Quad_v1_A_rs11202607-126_T_R_1502089623rev/TA/Gccatgttacatattggaacaataaagttacttttaatatgcggtgcccgaaattgtaaca07/06/0907/06/09131Genomicunknown
ss159969290ILLUMINA|HumanOmni1-Quad_v1-0_B_rs11202607-126_T_R_1502089623rev/TA/Gccatgttacatattggaacaataaagttacttttaatatgcggtgcccgaaattgtaaca08/04/0910/01/09131Genomicunknown
ss171158564ILLUMINA|Human1M-Duov3_B_rs11202607-126_T_R_1502089623rev/TA/Gccatgttacatattggaacaataaagttacttttaatatgcggtgcccgaaattgtaaca10/01/0910/01/09132Genomicunknown
ss2352745091000GENOMES|pilot_1_CEU_4879138_chr10_89717394fwd/C/Ttgttacaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaacatgg05/01/1005/01/10132Genomicunknown
ss2419617591000GENOMES|pilot_1_CHB+JPT_3846836_chr10_89717394fwd/C/Ttgttacaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaacatgg05/01/1005/01/10132Genomicunknown
ss244272001ILLUMINA|CVDSNP55v1_A_rs11202607rev/TA/Gccatgttacatattggaacaataaagttacttttaatatgcggtgcccgaaattgtaaca06/10/1006/10/10132Genomicunknown
ss280714863GMI|GMI_AK_SNP_5035198fwd/C/Ttgttacaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaacatgg12/16/1012/16/10137Genomicunknown
ss286235669GMI|GMI_NA10851_SNP_2248454fwd/C/Ttgttacaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaacatgg12/17/1012/17/10138Genomicunknown
ss479495895ILLUMINA|HumanOmni2.5-4v1_B_rs11202607-128_T_R_1501364460fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa01/30/1210/28/16137Genomicunknown
ss479499807ILLUMINA|HumanOmniExpress-12v1_C_rs11202607-131_T_R_1852949826fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa01/30/1210/27/16137Genomicunknown
ss479942940ILLUMINA|HumanOmni1-Quad_v1-0_C_rs11202607-131_T_R_1865441309fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa01/30/1208/28/15146Genomicunknown
ss484547289ILLUMINA|HumanOmni2.5-4v1_D_rs11202607-131_T_R_1852949826fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa01/30/1210/27/16137Genomicunknown
ss536686110ILLUMINA|HumanOmni5-4v1_B_rs11202607-131_T_R_1886407518fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa06/22/1208/29/15146Genomicunknown
ss657123270SSMP|10_89727414fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa12/14/1202/12/15138Genomicunknown
ss778755854ILLUMINA|HumanOmni25Exome-8v1_A_rs11202607-131_T_R_1869429303fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa05/30/1307/10/15146Genomicunknown
ss782720307ILLUMINA|HumanOmni2.5-4v1_H_rs11202607-131_T_R_1852949826fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa05/30/1307/29/15146Genomicunknown
ss783687891ILLUMINA|HumanOmniExpressExome-8v1_A_rs11202607-131_T_R_1886407518fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa05/31/1306/18/15146Genomicunknown
ss831971868ILLUMINA|HumanOmniExpress-12v1_H_rs11202607-131_T_R_1852949826fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa09/17/1306/18/15146Genomicunknown
ss834215563ILLUMINA|HumanOmni2.5-8v1_A_rs11202607-131_T_R_1869429303fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa09/18/1307/29/15146Genomicunknown
ss987754612EVA-GONL|EVA-GONL_rs11202607fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa04/23/1404/25/14142Genomicunknown
ss1077180490JMKIDD_LAB|HGDP_WGS_chr10_89727414fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa07/10/1407/11/14142Genomicunknown
ss13384396541000GENOMES|PHASE3_V1_51134413fwd/C/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa08/16/1408/16/14142Genomicunknown
ss1426397491DDI|DDI_rs11202607fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa11/04/1411/04/14144Genomicunknown
ss1575269335EVA_GENOME_DK|EVA_GENOME_DK_snv_rs11202607fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa02/19/1502/19/15144Genomicunknown
ss1597427372EVA_DECODE|EVA_DECODE_10_89717394_683359_rs11202607fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa03/02/1503/04/15144Genomicunknown
ss1625094830EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_10_89727414_28233939fwd/C/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa03/04/1503/04/15144Genomicunknown
ss1668088863EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_10_89727414_28233939fwd/C/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa03/04/1503/04/15144Genomicunknown
ss1711264015EVA_MGP|EVA_XIMO_379775fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa03/09/1503/09/15144Genomicunknown
ss1713198921EVA_SVP|EVA_SVP_893288fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa03/12/1503/12/15144Genomicunknown
ss1751985443ILLUMINA|OmniExpressExome-8v1-1_B_rs11202607-131_T_R_1886407518fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa05/27/1506/09/15146Genomicunknown
ss1931122886WEILL_CORNELL_DGM|SNV:chr10:89727414fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa10/16/1510/17/15147Genomicunknown
ss1967189171GENOMED|rs11202607fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa02/16/1602/16/16147Genomicunknown
ss2026289193JJLAB|SNP6791748fwd/BC/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa08/29/1608/30/16149Genomicunknown
ss2154564584USC_VALOUEV|NC_000010.10:g.89727414C>Tfwd/C/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa11/17/1611/17/16150Genomicunknown
ss2176768849HUMAN_LONGEVITY|HLI-10-87967657-C-Tfwd/C/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa11/18/1611/18/16150Genomicunknown
ss2339872340TOPMED|10_89727414_C/Tfwd/C/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa11/19/1611/19/16150Genomicunknown
ss2632742306ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs11202607-131_T_R_1886407fwd/C/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa02/02/1702/02/17151Genomicunknown
ss2698815896GRF|rs11202607fwd/C/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa02/13/1702/13/17151Genomicunknown
ss2710716510ILLUMINA|Consortium-OncoArray_15047405_A_rs11202607-131_T_R_1886407518fwd/C/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa03/22/1703/22/17151Genomicunknown
ss2891608618GNOMAD|rs11202607fwd/C/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa05/19/1705/19/17151Genomicunknown
ss3006890001SWEGEN|NC_000010.10:g.89727414C>Tfwd/C/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa05/30/1705/30/17151Genomicunknown
ss3026934160BIOINF_KMB_FNS_UNIBA|10.87967657C>Tfwd/C/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa07/05/1707/05/17151Genomicunknown
ss3126322888TOPMED|TOPMed_freeze_5?chr10:87,967,657fwd/C/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa09/29/1709/29/17151Genomicunknown
ss3349240484CSHL|rs11202607fwd/C/Tcaatttcgggcaccgcatattaaaagtaactttattgttccaatatgtaa10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs11202607|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=151
 GAATATCCAG CCATTTTGTT TCTTAATGGT ATAAAATTCC ATTTTCAATA ACTTATTGGT
 GCTGAAATTG TTCACTAGCT GTGGTCTGAC CTAGTTAATT TACAAATACA GATTGAATAG
 GACCTACTAG AGCAGCATTT ATAGAGTTTG ATGGCAAATA GATTAGGCAG AACTTCATCT
 AAAATATTCT TAGTAAATAA TGTTGACACG TTTTCCATAC CTTGTCAGTT TCATTCAACA
 ATTTTTAAAT TTTTAACAAA GCTCTTAGGA TTTACACATT TATATTTAAA CATTGATATA
 TAGAGTATTG ATTGATTGCT CATAAGTTAA ATTGGTAAAG TTAGAGACAA CTATTCTAAC
 ACCTCACCAT TGAAATTTAT ATGCCACCTT GTCTTTCATA AAAGCTGAAA ATTGTTACCT
 AAAATGAAAA TCAACTTCAT GTTTTGAAGA TAGTTATAAA TATTGTTCTT TGTTACAATT
 TCGGGCACCG CATATTAAAA
 Y
 GTAACTTTAT TGTTCCAATA TGTAACATGG AGGGCCAGGT CATAAATAAT GACATTATAA
 TGGGCTTTTG CACTGTTATT ATTTTTCCTT TGGAATGTGA AGGTCTGAAT GAGGGTTTTG
 ATTTTGAATG TTTCAATGTT TTTGAGAAGC CTTGCTTACA TTTTATGGTG TAGTCATTGG
 AAATGGAAAA ATGGCATTAT ATATATTATA TATATAAATA TATATTATAC ATACTCTCCT
 TACTTTATTT CAGTTACCAT CCCCATAGAA TTTGACAAGA ATTGCTATGA CTGAAAGGTT
 TTCGAGTCCT AATTAAAACT TTATTTATGG CAGTATTCAT AATTAGCCTG AAATGCATTC
 TGTAGGTAAT CTCTGAGTTT CTGGAATATT TTCTTAGACT TTTTGGATGT GCAGCAGCTT
 ACATGTCTGA AGTTACTTGA AGGCATCACT TTTAAGAAAG CTTACAGTTG GGCCCTGTAC
 CATCCCAAGT CCTTTGTAGC

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_030059.12
dbSNP Blast Analysis
UniGene Cluster ID
500466

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC/C
C/T
T/T
HWPC
T
ss1338439654EAS 1008AF 0.864100040.13589999
EUR 1006AF 0.923500000.07650000
AFR 1322AF 0.953899980.04610000
AMR 694AF 0.871799950.12820001
SAS 978AF 0.968299980.03170000
ss235274509pilot_1_CEU_low_coverage_panel 120AF 0.908333360.09166667
ss241961759pilot_1_CHB+JPT_low_coverage_panel 120AF 0.933333340.06666667
ss38349857EGP_YORUB-PANELSub-Saharan African 22IG1.00000000 1.00000000
EGP_HISP-PANELHispanic 44IG0.727272750.227272730.045454550.527089000.840909060.15909091
EGP_CEPH-PANELEuropean 44IG0.954545440.04545455 1.000000000.977272750.02272727
EGP_AD-PANELAfrican American 28IG0.857142870.14285715 1.000000000.928571400.07142857
EGP_ASIAN-PANELAsian 46IG0.826086940.130434780.043478260.150222000.891304370.10869565
ss61705810HapMap-CEUEuropean 226IG0.876106200.12389380 1.000000000.938053070.06194690
HapMap-HCBAsian 86IG0.813953460.18604651 1.000000000.906976760.09302326
HapMap-JPTAsian 172IG0.860465110.127906980.011627910.438578000.924418630.07558139
HapMap-YRISub-Saharan African 224IG0.946428600.05357143 1.000000000.973214270.02678571
HAPMAP-ASW 98IG0.918367330.08163265 1.000000000.959183690.04081633
HAPMAP-CHBAsian 82IG0.829268280.17073171 1.000000000.914634170.08536585
HAPMAP-CHD 170IG0.811764720.152941180.035294120.050043000.888235270.11176471
HAPMAP-GIH 176IG0.954545440.04545455 1.000000000.977272750.02272727
HAPMAP-LWK 180IG0.911111120.08888889 1.000000000.955555560.04444445
HAPMAP-MEX 100IG0.699999990.280000000.020000001.000000000.839999970.16000000
HAPMAP-MKK 284IG0.711267590.260563370.028169011.000000000.841549280.15845071
HAPMAP-TSI 174IG0.850574730.137931030.011494250.527089000.919540230.08045977
ENSEMBL_Venter 2IG1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.145+/-0.2270000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqWith1000GenomeDataUNKNOWNUNKNOWNYES