NCBI
dbSNP
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Reference SNP (refSNP) Cluster Report: rs117662806                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:132/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqWith1000GenomeData
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:
Ancestral Allele:G
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:A=0.0773/387 (1000 Genomes)
A=0.1163/14600 (TOPMED)
HGVS Names
  • CM000678.2:g.40914G>A
  • NC_000016.9:g.90914G>A
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss236913579 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs117662806 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss2369135791000GENOMES|pilot_1_CEU_6518208_chr16_30914fwd/A/Gaataataataataataataacaacaagctggcatggtgcgcacctgtagttccagccact05/01/1005/01/10132Genomicunknown
ss660454712SSMP|16_90914fwd/TA/Gtaataataataataacaacaagctggcatggtgcgcacctgtagttccag12/14/1202/13/15138Genomicunknown
ss992173268EVA-GONL|EVA-GONL_rs117662806fwd/TA/Gtaataataataataacaacaagctggcatggtgcgcacctgtagttccag04/23/1404/30/14142Genomicunknown
ss1080408295JMKIDD_LAB|HGDP_WGS_chr16_90914fwd/TA/Gtaataataataataacaacaagctggcatggtgcgcacctgtagttccag07/10/1407/12/14142Genomicunknown
ss13549509591000GENOMES|PHASE3_V1_68344189fwd/A/Gtaataataataataacaacaagctggcatggtgcgcacctgtagttccag08/16/1408/16/14142Genomicunknown
ss1427745423DDI|DDI_rs117662806fwd/TA/Gtaataataataataacaacaagctggcatggtgcgcacctgtagttccag11/04/1411/04/14144Genomicunknown
ss1577790924EVA_GENOME_DK|EVA_GENOME_DK_snv_rs117662806fwd/TA/Gtaataataataataacaacaagctggcatggtgcgcacctgtagttccag02/19/1502/19/15144Genomicunknown
ss1633790798EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_16_90914_37808122fwd/A/Gtaataataataataacaacaagctggcatggtgcgcacctgtagttccag03/04/1503/04/15144Genomicunknown
ss1676784831EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_16_90914_37808122fwd/A/Gtaataataataataacaacaagctggcatggtgcgcacctgtagttccag03/04/1503/04/15144Genomicunknown
ss1696205823EVA_DECODE|EVA_DECODE_16_30914_109_rs117662806fwd/TA/Gtaataataataataacaacaagctggcatggtgcgcacctgtagttccag03/02/1503/04/15144Genomicunknown
ss1935578312WEILL_CORNELL_DGM|SNV:chr16:90914fwd/TA/Gtaataataataataacaacaagctggcatggtgcgcacctgtagttccag10/16/1510/19/15147Genomicunknown
ss2028576445JJLAB|SNP9079000fwd/TA/Gtaataataataataacaacaagctggcatggtgcgcacctgtagttccag08/29/1608/31/16149Genomicunknown
ss2156983775USC_VALOUEV|NC_000016.9:g.90914G>Afwd/A/Gtaataataataataacaacaagctggcatggtgcgcacctgtagttccag11/17/1611/17/16151Genomicunknown
ss2209766282HUMAN_LONGEVITY|HLI-16-40914-G-Afwd/A/Gtaataataataataacaacaagctggcatggtgcgcacctgtagttccag11/18/1611/18/16150Genomicunknown
ss2939123210GNOMAD|rs117662806fwd/A/Gtaataataataataacaacaagctggcatggtgcgcacctgtagttccag05/23/1705/23/17151Genomicunknown
ss3013892132SWEGEN|NC_000016.9:g.90914G>Afwd/A/Gtaataataataataacaacaagctggcatggtgcgcacctgtagttccag05/30/1705/30/17151Genomicunknown
ss3028112979BIOINF_KMB_FNS_UNIBA|16.40914G>Afwd/A/Gtaataataataataacaacaagctggcatggtgcgcacctgtagttccag07/05/1707/05/17151Genomicunknown
ss3351285360CSHL|rs117662806fwd/A/Gtaataataataataacaacaagctggcatggtgcgcacctgtagttccag10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs117662806|allelePos=201|totalLen=401|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 AGCCAGGCAT GGTAGCACAT GCCTGGAATC CCAGCTACTC AGGAGGCTGA GGCAGGAGAA
 TAGCTTGAAC CCGGGAGGCA GAGGTTGCAG TGAGCCGAGA TCATGACATT GCACTCCACC
 CTGGGCAACA AGAGCAAAAC TCCATCTCAA AAATAATAAT AATAATAAAT AATAATAATA
 ATAATAATAA CAACAAGCTG
 R
 GCATGGTGCG CACCTGTAGT TCCAGCCACT CGGGAGGCTG AGGTGGGAGG ATCGCTTGAG
 CCCAGGAGGT CCAGGCTGCA GTGAGCTGGG ATTGCGTTGG AACAGGAATT AAAAGAAATT
 AAAGAATGTG TAAGCAGAAA CTCAGTTGTA TGTAAGAAAA CCCAGTTCCC CTGAGAAAGA
 GAAAGAGCTG GAGTCCTTTA

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NC_000016
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotypesAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceHWPA
G
ss1354950959EAS 1008AF 1.00000000
EUR 1006AF 0.161000000.83899999
AFR 1322AF 0.049900000.95010000
AMR 694AF 0.128200010.87179995
SAS 978AF 0.071600010.92840004
ss236913579pilot_1_CEU_low_coverage_panel 120AF 0.125000000.87500000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0.143+/-0.2260000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqWith1000GenomeDataUNKNOWNUNKNOWNUNKNOWN