NCBI
dbSNP
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Reference SNP (refSNP) Cluster Report: rs12021501                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:120/151
Map to Genome Build:108/Weight 1
Validation Status:
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:
Ancestral Allele:G
Variation Viewer:link to VariationViewer
Clinical Significance:NA
NA
HGVS Names
  • CM000663.2:g.113327460G>A
  • NC_000001.10:g.113870082G>A
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss18069702 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs12021501 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss18069702SC_SNP|SC-CHR1_NA11321-200402.chr1.NT_019273.16_4866030fwd/TA/Gctctctgtgtgttgagctgcctggagctgaggaggggtgacaccagcatccctgtgacca02/20/0403/04/04120Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs12021501|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=120
 Aattcttaat tctttttctg tgttaccttg aatttctttg agttttgttc aaacagctat
 ttgaaattct ctgtctgaaa ggtcacatat ctctgtctct ctggggttgt tccctggtgc
 cttatttagt ttgtttggtg aggccatgct cttttgaatg gtcttgatgc ttatggatat
 ttgttggtgc ctgggctttg aggagttatt cataatctgg gcttgtttgt acctgtcctt
 cttggaaagg ctttccaggt atttgaaggg acttgggttt ggtgacctaa gtttttgatc
 actgcagcca tatctgcttt aggaagtact ccaagcccag taacactggt tcttgcagac
 tcgtagaggt acgcccatgg ggtcttggat aagatctggg agaattctct ggattaccag
 gcaaagactc ttgttctctt ttcttacttt ctctcaaaca aatggagtct ctctctgtgt
 gttgagctgc ctggagctga
 R
 ggaggggtga caccagcatc cctgtgacca gtacctctga gactgcactg ggtcagacct
 gaagccagca cagcactggg tcctgcccag gcctgctgta actactccct ggctactgtc
 tatgttcaat caaggccttg gggctctaca atcagcaggt ggtgaagcca gccatgcttg
 tgtccctccc ttaagggcag caatccctct ggcccccagg caggtccaaa gatgccgtcc
 tggagcgagg gcctggaggc agaaacccta gaagtctacc tgatgctcta gtctaatgtg
 gctgagctgt caccaaaacc accagaaaaa gtccttctca ctcttctctc cccttttccc
 aggcagagga gtctctcccc atgtctgcca ccaccataag ttcatggaga gtactgccag
 ggtaccacta atgttcactt aaggcccaag ggctcttcag tgagcttttg gtaaatgctg
 ccaggcctgg gactcactct

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_019273
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN