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dbSNP
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This legacy RefSNP page contains old data from dbSNP build 151 (March 2018) and is no longer maintained. Please update your links and bookmarks to use the re-designed RefSNP Report page.
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Reference SNP (refSNP) Cluster Report: rs12021504                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:120/151
Map to Genome Build:108/Weight 1
Validation Status:
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (FWD)
Allele Origin:
Ancestral Allele:C
Variation Viewer:link to VariationViewer
Clinical Significance:NA
NA
HGVS Names
  • CM000663.2:g.63292225C>T
  • NC_000001.10:g.63757896C>T
  • NC_000001.11:g.63292225C>T
  • NR_038252.2:n.391+12470G>A
  • NR_038252.3:n.391+12470G>A
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss18069709 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs12021504 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss18069709SC_SNP|SC-CHR1_NA11321-200402.chr1.NT_032977.6_25320966fwd/BC/Ttccagccagggtgacagagtgagactccattcaaaaaaaaaaaaaaaaaaaaaaaagaat02/20/0403/04/04120Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs12021504|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=120
 TTTAGAAAGA CAAATTGAAT TGCTATAAGG AATATGGATC CTTTCAAAGT ACTGCTCAAG
 ATTGACATCA CTGTATCTAA ATTATCTTTC ATTTGTTTTT AAGATGTTCA TCTCAAGAAC
 CAGCATGCTA GTACTCACTT TGTTATATAT CACATATTAC ATTGATCAAA GTATTTCTTT
 TGGCTGGATC CTAGATTTAG CCTCAGAATT TTCCTCAACA CAagccagtc acagtggctc
 atgcctgtaa tcccatcact ttgggaggct ggatcacttg agatcagaag tttgatacca
 acctggccaa catggtgaaa ccccatctct actaaaaata caaaaattag ctaaattagc
 tgagcatggt ggtgcacacc tgtagtccca gctacttggg aggctgaagt gggagaatcg
 cttgaaccca caggcagagg ttgcagtgag ccaatattgc atcactgcac tccagccagg
 gtgacagagt gagactccat
 Y
 tcaaaaaaaa aaaaaaaaaa aaaaaagaaT TTTCCTCAGC GCGATTCTCC TATTCTTCTA
 GCAGCAATGA TCAATTGAAG AAACTTCTTT GCAGGCCCGG GCACTGTAAA AAAGAACAGG
 ATTTggccgg gcgcggtggc tcacgcccat aatcccagca ctttgggagg ccgaggcagg
 tggatcacga ggtcaggaaa cagagatgac caacatggtg aaaccccatc tctactaaaa
 attcaaaaat tagccgggcg tgttggcgtg tgcctctagt cccagctact caggaggctg
 aagcaggaga atcgcttgaa cgcaggaggc ggaggttgcc gtgagccgag accgtgccac
 tgcactccag cctgggccac acagcgagac actgtctcaa aaaaaaaaaa aaaGgccggg
 tgcggtggct cacgcctgta atcccagcac tttgggaggc caaagtgggc agatcatgag
 gtcaggagat catcctggct

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_032977
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN