NCBI
dbSNP
Attention: This page will be retired!
This legacy RefSNP page contains old data from dbSNP build 151 (March 2018) and is no longer maintained. Please update your links and bookmarks to use the re-designed RefSNP Report page.
Spacer gif

Spacer gif
Reference SNP (refSNP) Cluster Report: rs142753025                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:134/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterWith1000GenomeData
Allele
Variation Class:DIV:
deletion/insertion variation
RefSNP Alleles:-/GATAGAGA (FWD)
Allele Origin:
Ancestral Allele:Not available
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:-=0.0276/3470 (TOPMED)
HGVS Names
  • CM000663.2:g.862155_862162delGATAGAGA
  • NC_000001.10:g.797535_797542delGATAGAGA
  • NC_000001.11:g.862155_862162delGATAGAGA
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss287939326 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs142753025 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss287939326GMI|GMI_AK_INDEL_75fwd/-/GATAGAGAagatgatagatggatggatgatagatgattgatagagagagaaggatgatagactgagca12/20/1012/22/11137Genomicunknown
ss3259974721000GENOMES|JPTCHB_chr1_787397_indelfwd/-/GATAGAGAagatgatagatggatggatgatagatgattgatagagagagaaggatgatagactgagca03/11/1104/01/11134Genomicunknown
ss552739005LUNTER|JPTCHB_1_787398-787405fwd/-/GATAGAGAatagatggatggatgatagatgattgatagagagagaaggatgatagact11/21/1211/21/12138Genomic95 %
ss1700142688EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_1_797534_510fwd/-/GATAGAGAatagatggatggatgatagatgattgatagagagagaaggatgatagact03/04/1503/06/15144Genomicunknown
ss1700153574EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_1_797534_510fwd/-/GATAGAGAatagatggatggatgatagatgattgatagagagagaaggatgatagact03/04/1503/06/15144Genomicunknown
ss2750641572GNOMAD|rs142753025fwd/-/GATAGAGAatagatggatggatgatagatgattgatagagagagaaggatgatagact05/17/1705/17/17151Genomicunknown
ss3063573522MCHAISSO|HG00514118fwd/-/GATAGAGAatagatggatggatgatagatgattgatagagagagaaggatgatagact09/15/1709/15/17151Genomic92 %

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs142753025|allelePos=501|totalLen=1001|taxid=9606|snpclass=2|alleles='-/GATAGAGA'|mol=Genomic|build=151
 ATGTATGTGT GTATGTGCAT ATGTGTGCAT GTGAAGATGG ATAGATGATA GATACATAGG
 TGATTTATGT ATAGGTAGAT GACAGATATT GGTAATTAAT TGATAGTAGA TAGGTTGATA
 GTATATAGGT GATTGATAGA TGGATGATAG ATCATTGATA GATGATAGGT AGATAGTAGA
 TAGATTATAG GTAGATAAAT AGATGGATGA TGGATGGATG ATAGATACTT GATTGATAGA
 TGATAGGTAG ATAGTAGATA GATGATAGAT AATGATAGAT GATAGCTAGA TAGTAGATAG
 ATGTGATAGG TAGATGGTAG ATAGAGATGA TGATAGATGG ATGATAGATG GATGGATGGA
 TGATAGGTGA TTGATAGATG GTAGATAGGT GGATGGTAGA GATGGTAGAT AAATAGATGG
 ATGATGGATG GATGATAGAG AGCTGATAGT AGATAAGGTA GATAGTAGAT AGATGATAGA
 TGGATGGATG ATAGATGATT
 N
 GATAGAGAGA GAAGGATGAT AGACTGAGCA TCATAACTTC ACTGAATGCT ACCAGTTGGA
 TTCAAAAGTC AGCAAACTGA AACGTCGAAT TTCAGCCAGC TATCAGAAAT ATTGTAATCT
 GACAACAAAA GATAAACAAG GGAACATGGA AGTGGCAGCT ATTCCAGAAG CTGCACCTCT
 CAGCATGGGC ACAGAACCAC AGAAGTGGAG CCAGAGTCCT CTCCACATCT CCTCTGGGTC
 GGCGTTATCA TTGTCACAAT GGGTGGAGGC TGGACCTTGT GAAGGCAAAG GCATACGGTG
 CTTTCTTGCT TCTGCTGTTT GGTGACTCCC TTACTCATTC CCTCTGCGGT GGCTGAGGGG
 CTGATGATCA GTTCCTCTGC CCAGAATGCC CTGACCATGC TGGGTGTCTG TCCTCCCTAG
 ACCTGGGTCT GCAGGATGAC AAGGACCCTG CAGCAGAAAC TCCTCTGTCT CTTCCCTGAG
 CACCGTCTTC CATGCTGCCT

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterWith1000GenomeDataUNKNOWNUNKNOWNUNKNOWN