NCBI
dbSNP
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This legacy RefSNP page contains old data from dbSNP build 151 (March 2018) and is no longer maintained. Please update your links and bookmarks to use the re-designed RefSNP Report page.
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Reference SNP (refSNP) Cluster Report: rs200782791                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:137/151
Map to Genome Build:108/Weight 1
Validation Status:
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:
Ancestral Allele:Not available
Variation Viewer:link to VariationViewer
Clinical Significance:NA
NA
HGVS Names
  • CM000663.2:g.10603G>A
  • NC_000001.10:g.10603G>A
  • NC_000001.11:g.10603G>A
  • NR_046018.2:n.-1271G>A
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss275679849 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs200782791 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss275679849GMI|GMI_AK_SNP_9fwd/A/Gccctcgcggtgctctccgggtctgtgctgagagaacgcaactccgccggcgcaggcgcag12/16/1012/16/10137Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs200782791|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=137
 TAACCCAACC CTAACCCTAA CCCTAACCCT AACCCTAACC CTAACCCCTA ACCCTAACCC
 TAACCCTAAC CCTAACCTAA CCCTAACCCT AACCCTAACC CTAACCCTAA CCCTAACCCT
 AACCCTAACC CCTAACCCTA ACCCTAAACC CTAAACCCTA ACCCTAACCC TAACCCTAAC
 CCTAACCCCA ACCCCAACCC CAACCCCAAC CCCAACCCCA ACCCTAACCC CTAACCCTAA
 CCCTAACCCT ACCCTAACCC TAACCCTAAC CCTAACCCTA ACCCTAACCC CTAACCCCTA
 ACCCTAACCC TAACCCTAAC CCTAACCCTA ACCCTAACCC CTAACCCTAA CCCTAACCCT
 AACCCTCGCG GTACCCTCAG CCGGCCCGCC CGCCCGGGTC TGACCTGAGG AGAACTGTGC
 TCCGCCTTCA GAGTACCACC GAAATCTGTG CAGAGGACAA CGCAGCTCCG CCCTCGCGGT
 GCTCTCCGGG TCTGTGCTGA
 R
 GAGAACGCAA CTCCGCCGGC GCAGGCGCAG AGAGGCGCGC CGCGCCGGCG CAGGCGCAGA
 CACATGCTAG CGCGTCGGGG TGGAGGCGTG GCGCAGGCGC AGAGAGGCGC GCCGCGCCGG
 CGCAGGCGCA GAGACACATG CTACCGCGTC CAGGGGTGGA GGCGTGGCGC AGGCGCAGAG
 AGGCGCACCG CGCCGGCGCA GGCGCAGAGA CACATGCTAG CGCGTCCAGG GGTGGAGGCG
 TGGCGCAGGC GCAGAGACGC AAGCCTACGG GCGGGGGTTG GGGGGGCGTG TGTTGCAGGA
 GCAAAGTCGC ACGGCGCCGG GCTGGGGCGG GGGGAGGGTG GCGCCGTGCA CGCGCAGAAA
 CTCACGTCAC GGTGGCGCGG CGCAGAGACG GGTAGAACCT CAGTAATCCG AAAAGCCGGG
 ATCGACCGCC CCTTGCTTGC AGCCGGGCAC TACAGGACCC GCTTGCTCAC GGTGCTGTGC
 CAGGGCGCCC CCTGCTGGCG

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN