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dbSNP
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This legacy RefSNP page contains old data from dbSNP build 151 (March 2018) and is no longer maintained. Please update your links and bookmarks to use the re-designed RefSNP Report page.
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Reference SNP (refSNP) Cluster Report: rs2661837                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:100/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqWith1000GenomeData
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/G (FWD)
Allele Origin:
Ancestral Allele:C
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:G=0.0166/83 (1000 Genomes)
G=0.0072/909 (TOPMED)
HGVS Names
  • CM000668.2:g.160369142C>G
  • NC_000006.11:g.160790174C>G
  • NC_000006.12:g.160369142C>G
  • NM_021977.3:c.429+20294C>G
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss279105363 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2661837 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss3754555SC_JCM|AC034136.6_2907byFreqfwd/TC/Gacagtagatactttcaggggattttcatataatgattgcattttgccattgttctttatt09/25/0110/25/06100Genomicunknown
ss75242062ILLUMINA|ILMN_Human_1M_rs2661837fwd/C/Gacagtagatactttcaggggattttcatataatgattgcattttgccattgttctttatt08/28/0708/29/07129Genomicunknown
ss119441897KRIBB_YJKIM|KHS1604144fwd/C/Gacagtagatactttcaggggattttcatataatgattgcattttgccattgttctttatt02/04/0902/04/09131Genomicunknown
ss160567648ILLUMINA|HumanOmni1-Quad_v1-0_B_rs2661837-128_B_R_1514211721rev/C/Gaataaagaacaatggcaaaatgcaatcattatatgaaaatcccctgaaagtatctactgt08/04/0910/03/09131Genomicunknown
ss173422075ILLUMINA|Human1M-Duov3_B_rs2661837-128_B_R_1514211721rev/C/Gaataaagaacaatggcaaaatgcaatcattatatgaaaatcccctgaaagtatctactgt10/01/0910/03/09132Genomicunknown
ss2407657591000GENOMES|pilot_1_CHB+JPT_2650836_chr6_160710164fwd/C/Gacagtagatactttcaggggattttcatataatgattgcattttgccattgttctttatt05/01/1005/01/10132Genomicunknown
ss279105363GMI|GMI_AK_SNP_3425605fwd/C/Gacagtagatactttcaggggattttcatataatgattgcattttgccattgttctttatt12/16/1012/16/10137Genomicunknown
ss410859471ILLUMINA|Cardio-Metabo_Chip_11395247_A_chr6_160710164rev/C/Gaataaagaacaatggcaaaatgcaatcattatatgaaaatcccctgaaagtatctactgt06/07/1106/07/11135Genomicunknown
ss480629065ILLUMINA|HumanOmni2.5-4v1_B_rs2661837-128_B_R_1617290852rev/C/Gagatactttcaggggattttcatataatgattgcattttgccattgttct01/30/1210/28/16137Genomicunknown
ss480644152ILLUMINA|HumanOmniExpress-12v1_C_rs2661837-131_B_R_1857285989rev/C/Gagatactttcaggggattttcatataatgattgcattttgccattgttct01/30/1210/27/16137Genomicunknown
ss481484791ILLUMINA|HumanOmni1-Quad_v1-0_C_rs2661837-131_B_R_1865214623fwd/C/Gagatactttcaggggattttcatataatgattgcattttgccattgttct01/30/1208/28/15146Genomicunknown
ss485109696ILLUMINA|HumanOmni2.5-4v1_D_rs2661837-131_B_R_1857285989rev/C/Gagatactttcaggggattttcatataatgattgcattttgccattgttct01/30/1210/28/16137Genomicunknown
ss537113644ILLUMINA|HumanOmni5-4v1_B_rs2661837-131_B_R_1885746917fwd/C/Gagatactttcaggggattttcatataatgattgcattttgccattgttct06/22/1208/29/15146Genomicunknown
ss559669011TISHKOFF|snp_chr6_160790174fwd/C/Gagatactttcaggggattttcatataatgattgcattttgccattgttct11/22/1211/23/12138Genomicunknown
ss654012387SSMP|6_160790174fwd/C/Gagatactttcaggggattttcatataatgattgcattttgccattgttct12/14/1202/11/15138Genomicunknown
ss778342316ILLUMINA|HumanOmni25Exome-8v1_A_rs2661837-131_B_R_1865214623fwd/C/Gagatactttcaggggattttcatataatgattgcattttgccattgttct05/30/1307/09/15142Genomicunknown
ss783001128ILLUMINA|HumanOmni2.5-4v1_H_rs2661837-131_B_R_1857285989fwd/C/Gagatactttcaggggattttcatataatgattgcattttgccattgttct05/30/1307/28/15142Genomicunknown
ss783961611ILLUMINA|HumanOmniExpressExome-8v1_A_rs2661837-131_B_R_1885746917fwd/C/Gagatactttcaggggattttcatataatgattgcattttgccattgttct05/31/1306/19/15142Genomicunknown
ss832258263ILLUMINA|HumanOmniExpress-12v1_H_rs2661837-131_B_R_1857285989fwd/C/Gagatactttcaggggattttcatataatgattgcattttgccattgttct09/17/1306/19/15144Genomicunknown
ss833796926ILLUMINA|HumanOmni2.5-8v1_A_rs2661837-131_B_R_1865214623fwd/C/Gagatactttcaggggattttcatataatgattgcattttgccattgttct09/18/1307/28/15142Genomicunknown
ss1074207831JMKIDD_LAB|HGDP_WGS_chr6_160790174fwd/C/Gagatactttcaggggattttcatataatgattgcattttgccattgttct07/10/1407/11/14142Genomicunknown
ss13231490171000GENOMES|PHASE3_V1_35235822fwd/C/Gagatactttcaggggattttcatataatgattgcattttgccattgttct08/16/1408/16/14142Genomicunknown
ss1712916976EVA_SVP|EVA_SVP_611343fwd/C/Gagatactttcaggggattttcatataatgattgcattttgccattgttct03/12/1503/12/15144Genomicunknown
ss1752613038ILLUMINA|OmniExpressExome-8v1-1_B_rs2661837-131_B_R_1885746917fwd/C/Gagatactttcaggggattttcatataatgattgcattttgccattgttct05/27/1506/09/15146Genomicunknown
ss2152345846USC_VALOUEV|NC_000006.11:g.160790174C>Gfwd/C/Gagatactttcaggggattttcatataatgattgcattttgccattgttct11/17/1611/17/16150Genomicunknown
ss2290210366HUMAN_LONGEVITY|HLI-6-160369142-C-Gfwd/C/Gagatactttcaggggattttcatataatgattgcattttgccattgttct11/18/1611/18/16150Genomicunknown
ss2634539673ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs2661837-131_B_R_18857469fwd/C/Gagatactttcaggggattttcatataatgattgcattttgccattgttct02/02/1702/02/17151Genomicunknown
ss2707984799GRF|rs2661837fwd/C/Gagatactttcaggggattttcatataatgattgcattttgccattgttct02/13/1702/13/17151Genomicunknown
ss2847592380GNOMAD|rs2661837fwd/C/Gagatactttcaggggattttcatataatgattgcattttgccattgttct05/18/1705/18/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs2661837|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='C/G'|mol=Genomic|build=151
 TCCCCGCCAC ACCACAGAAT CTGTGCTTCC CAGGGTCTCT GATGACCTTG AGGTTGCTGT
 TCACTCACCT CCTCACCCCT GGTCTTATGT ATCACACCAA AGTGTCAGCT GTGCAAAAGC
 CAGGAATAGG ATTCCTACTC TGTAGGGACC CCTGTGGCTG GCGCAGGTAG CTGCCATAGT
 CACCGGTTCA TATTTCACCG TTCTGCTCAT TTCGTGCTCC CTGGTACATC TCTTATTTCA
 CTGCTTGCAT ATTCTGTCCA AGCTCTGATA AAGCCAAACA CATTTAACAG ATGGACACAA
 CTGGCCATGC TTCAGGCTTC TGATTCACCC ATACTTCCAG GAGCCATGAA TCTGAAATCT
 GGAGCTGGTC TGTAGAAAGC ATTCTATTTA GTGAAATGTT GAAGGAATTT TAGGTCAACT
 ATCATGTATT TCATTGTCTC CAATGCCATA ATTTCCAAGT GCCTACTTGA ACAGTAGATA
 CTTTCAGGGG ATTTTCATAT
 S
 AATGATTGCA TTTTGCCATT GTTCTTTATT TTTTCAGTAA TGCTCCATCT GTAAACAACC
 CAAATTTCAA AGCCTGACAT AGTGTATTGA CAAATTATTC CTGGATGCCT GTTTTTATCA
 GGCCAAAATC CATAGTTATT CTAAAATGGA TATCATACAA ATAATGCTGC TGTAGCATGC
 TAACATTTTC CAGACTATTA TGAAAATGTT TAGCTCATTT ACAAGTCATG GGAAACAATA
 TCGGAATTTG CTACTGTGTA GAACCATTAC TATAGCACTT CCAGTGATGC CTGCTTGTGA
 TCTTTATTGC CCACTTTATA GTTCTGTATT TTCATCTCCA TTTTTTAATC CTTAAATATA
 CAAAGTAAAA TGTAAATATC TTTTTTGTGG GTCTTTTAGA ATTATTTTTT AGCATTAGCA
 CTTGTAAATT TACTGGAAGT TTCAACAATT TGTATTTCAT GTTAGATAAA AGTAAGGAAG
 CTTTCAAAGA AAAGTCTAAC

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NC_000006 AC040893
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC/C
C/G
HWPC
G
ss1323149017EAS 1008AF 0.927600030.07240000
EUR 1006AF 1.00000000
AFR 1322AF 0.993200000.00680000
AMR 694AF 0.998599950.00140000
SAS 978AF 1.00000000
ss240765759pilot_1_CHB+JPT_low_coverage_panel 120AF 0.958333310.04166667
ss3754555HapMap-CEUEuropean 120IG1.00000000 1.00000000
HapMap-HCBAsian 90IG0.844444450.155555561.000000000.922222200.07777778
HapMap-JPTAsian 90IG0.977777780.022222221.000000000.988888860.01111111
HapMap-YRISub-Saharan African 120IG1.00000000 1.00000000
ENSEMBL_Watson 2IG1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0.033+/-0.1230000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqWith1000GenomeDataUNKNOWNUNKNOWNUNKNOWN