NCBI
dbSNP
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Reference SNP (refSNP) Cluster Report: rs2821571                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:100/151
Map to Genome Build:108/Weight 1
Validation Status:bySubmitter
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (FWD)
Allele Origin:
Ancestral Allele:T
Variation Viewer:link to VariationViewer
Clinical Significance:NA
NA
HGVS Names
  • CM000683.2:g.13012468T>C
  • NC_000021.8:g.14384789T>C
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss3995628 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2821571 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss3995628PERLEGEN|P00199476fwd/BC/Tgagtatgggatgacaattttcaacctggcaatataaaaagaagaaaaatgttgggtaaat09/26/0110/10/03100Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs2821571|allelePos=101|totalLen=201|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=100
 GTGGGCAATA TCATCAACCC TTGAGGGAAA TTCAAGATAT TCCTAACACA GAAATATTCT
 TAGCTGAAAA GAGTATGGGA TGACAATTTT CAACCTGGCA
 Y
 ATATAAAAAG AAGAAAAATG TTGGGTAAAT GAACAGCAAA AGAAAGATGA CATTCATATG
 TCCTATGCAA TTCTGAATAC TTATTTTATG TAGGTGAATA

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_002836
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
bySubmitter
Validated by: PERLEGEN
UNKNOWNUNKNOWNUNKNOWN