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dbSNP
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Reference SNP (refSNP) Cluster Report: rs2821590                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:100/151
Map to Genome Build:108/Weight 1
Validation Status:bySubmitterWith1000GenomeData
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:G/T (FWD)
Allele Origin:
Ancestral Allele:T
Variation Viewer:link to VariationViewer
Clinical Significance:NA
NA
HGVS Names
  • CM000683.2:g.13029409G>T
  • NC_000021.8:g.14401730G>T
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss3995649 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2821590 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss3995649PERLEGEN|P00199501fwd/BG/Tggaaaaaaggacagattcttgatgaaactagcaaataatgagacagcaagtaaaaagggc09/26/0110/10/03100Genomicunknown
ss3408876631000GENOMES|20100804_snps_12531204_chr21_14401730fwd/G/Tggaaaaaaggacagattcttgatgaaactagcaaataatgagacagcaagtaaaaagggc03/22/1103/22/11134Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs2821590|allelePos=101|totalLen=201|taxid=9606|snpclass=1|alleles='G/T'|mol=Genomic|build=134
 CTTTTTCCTT AATAGGTATT TTCATACCTT ATAAACACAT GTATGACCTT GGATGTCCAA
 TTAAATCCCA GGAAAAAAGG ACAGATTCTT GATGAAACTA
 K
 GCAAATAATG AGACAGCAAG TAAAAAGGGC TCCCCAGCAG AACCTCCGAC CAGCTTGCAC
 ACTGACAGGA GTGCACACTG AGGTGGAGCC TCAGGAAGTT

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_002836
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
bySubmitterWith1000GenomeData
Validated by: PERLEGEN
UNKNOWNUNKNOWNUNKNOWN