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dbSNP
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This legacy RefSNP page contains old data from dbSNP build 151 (March 2018) and is no longer maintained. Please update your links and bookmarks to use the re-designed RefSNP Report page.
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Reference SNP (refSNP) Cluster Report: rs28853987                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:125/151
Map to Genome Build:108/Weight 1
Validation Status:
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:
Ancestral Allele:Not available
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:A=0.0148/1856 (TOPMED)
HGVS Names
  • CM000663.2:g.10938G>A
  • NC_000001.10:g.10938G>A
  • NC_000001.11:g.10938G>A
  • NR_046018.2:n.-936G>A
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss35373994 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs28853987 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss35373994SSAHASNP|TA-079.chr1_801fwd/TA/Gcgcaggcgcagagaggcgcaccgcgccggccaggcgcagagacacatgctagcgcgtcca03/11/05125Genomicunknown
ss2750600997GNOMAD|rs28853987fwd/A/Ggcgcagagaggcgcaccgcgccggccaggcgcagagacacatgctagcgc05/17/1705/17/17151Genomicunknown
ss2986141224SWEGEN|NC_000001.10:g.10938G>Afwd/A/Ggcgcagagaggcgcaccgcgccggccaggcgcagagacacatgctagcgc05/30/1705/30/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs28853987|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 CCCAACCCCA ACCCCAACCC CAACCCTAAC CCCTAACCCT AACCCTAACC CTACCCTAAC
 CCTAACCCTA ACCCTAACCC TAACCCTAAC CCCTAACCCC TAACCCTAAC CCTAACCCTA
 ACCCTAACCC TAACCCTAAC CCCTAACCCT AACCCTAACC CTAACCCTCG CGGTACCCTC
 AGCCGGCCCG CCCGCCCGGG TCTGACCTGA GGAGAACTGT GCTCCGCCTT CAGAGTACCA
 CCGAAATCTG TGCAGAGGAC AACGCAGCTC CGCCCTCGCG GTGCTCTCCG GGTCTGTGCT
 GAGGAGAACG CAACTCCGCC GGCGCAGGCG CAGAGAGGCG CGCCGCGCCG GCGCAGGCGC
 AGACACATGC TAGCGCGTCG GGGTGGAGGC GTGGCGCAGG CGCAGAGAGG CGCGCCGCGC
 CGGCGCAGGC GCAGAGACAC ATGCTACCGC GTCCAGGGGT GGAGGCGTGG CGCAGGCGCA
 GAGAGGCGCA CCGCGCCGGC
 R
 CAGGCGCAGA GACACATGCT AGCGCGTCCA GGGGTGGAGG CGTGGCGCAG GCGCAGAGAC
 GCAAGCCTAC GGGCGGGGGT TGGGGGGGCG TGTGTTGCAG GAGCAAAGTC GCACGGCGCC
 GGGCTGGGGC GGGGGGAGGG TGGCGCCGTG CACGCGCAGA AACTCACGTC ACGGTGGCGC
 GGCGCAGAGA CGGGTAGAAC CTCAGTAATC CGAAAAGCCG GGATCGACCG CCCCTTGCTT
 GCAGCCGGGC ACTACAGGAC CCGCTTGCTC ACGGTGCTGT GCCAGGGCGC CCCCTGCTGG
 CGACTAGGGC AACTGCAGGG CTCTCTTGCT TAGAGTGGTG GCCAGCGCCC CCTGCTGGCG
 CCGGGGCACT GCAGGGCCCT CTTGCTTACT GTATAGTGGT GGCACGCCGC CTGCTGGCAG
 CTAGGGACAT TGCAGGGTCC TCTTGCTCAA GGTGTAGTGG CAGCACGCCC ACCTGCTGGC
 AGCTGGGGAC ACTGCCGGGC

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN