NCBI
dbSNP
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Reference SNP (refSNP) Cluster Report: rs2907081                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:101/151
Map to Genome Build:108/Weight 1
Validation Status:byCluster
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (FWD)
Allele Origin:
Ancestral Allele:Not available
Variation Viewer:link to VariationViewer
Clinical Significance:NA
NA
HGVS Names
  • CM000663.2:g.68316T>C
  • NC_000001.10:g.68316T>C
  • NC_000001.11:g.68316T>C
  • NM_001005484.1:c.-775T>C
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss163702023 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2907081 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss4102163SC_JCM|AC005605.1_8664fwd/BC/Tcacacaaccacaacctgcagttattacctatgttaggcttaaaataattacttggcttca10/15/0110/10/03101Genomicunknown
ss163702023COMPLETE_GENOMICS|NA07022_36_chr1_58179fwd/BC/Tcacacaaccacaacctgcagctattacctatgttaggcttaaaataattacttggcttca09/28/0909/29/09132Genomicunknown
ss553710077TISHKOFF|snp_chr1_68316fwd/BC/Taaccacaacctgcagctattacctatgttaggcttaaaataattacttgg11/22/1211/22/12142Genomicunknown
ss832934030ILLUMINA|Human660W-Quad_v1_C_rs2907081-128_B_F_1864650226fwd/BC/Taaccacaacctgcagctattacctatgttaggcttaaaataattacttgg09/18/1307/02/15147Genomicunknown
ss833524860ILLUMINA|Human660W-Quad_v1_H_rs2907081-128_B_F_1864650226fwd/BC/Taaccacaacctgcagctattacctatgttaggcttaaaataattacttgg09/18/1307/02/15147Genomicunknown
ss1793705114HAMMER_LAB|Hsieh_24fwd/BC/Taaccacaacctgcagctattacctatgttaggcttaaaataattacttgg07/15/1507/15/15146Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs2907081|allelePos=251|totalLen=501|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=147
 CCTCACAGAA CTTCTATAAA GTTGTGCTAT TATCACCTAT ATTTTCCAGA TGTGGCCGTA
 AGACTGAAAT CACTTAGGTG ACTTGTCTAA GGTCATTCAG ATACATAGTA GATAACCCAG
 GATTTGAACA CAGGCCTCCT AGCACACAAG CTCATATCTT AACTACTTTA ATACGTTGCT
 CGATGGGATC TTACAGGTCT TCATTCACCC CTTTCCTGCT CACACAACCA CAACCTGCAG
 CTATTACCTA
 Y
 TGTTAGGCTT AAAATAATTA CTTGGCTTCA TTTCCAAGCT CCCTCCCTTC CAATTCACAT
 TGAGTCCAGA GCTAAATTAA ACAATCATTC AAAATTTTTC AGTAGTTCTT GTCTCTATAA
 TAAAACAGAA ATGCTTTAGA AAGCATTCCA AAATCTCTTA CCAGTTTTAT CTCCTATGAA
 AGTCCTTCAC ACTTTCTCTC ATTTAAACTT TATTGCATTT TCCTCACTTT TTCTCACTTC
 ACTTTTGAAT

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
AC005605 AC073186 L78442
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC/C
HWPC
ss163702023CEUEuropean 2IG1.00000000 1.00000000
ss4102163ENSEMBL_Venter 2IG1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterUNKNOWNUNKNOWNUNKNOWN