NCBI
dbSNP
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This legacy RefSNP page contains old data from dbSNP build 151 (March 2018) and is no longer maintained. Please update your links and bookmarks to use the re-designed RefSNP Report page.
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Reference SNP (refSNP) Cluster Report: rs34003473                 ** With Benign allele **
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:126/151
Map to Genome Build:108/Weight 1
Validation Status:byCluster
Citation:PubMedLitVarNEW
Allele
Variation Class:DIV:
deletion/insertion variation
RefSNP Alleles:-/T (FWD)
Allele Origin:
Ancestral Allele:T
Variation Viewer:link to VariationViewer
Clinical Significance:With Benign allele [ClinVar]
NA
HGVS Names
  • CM000672.2:g.87960877_87960878insT
  • NC_000010.10:g.89720634_89720635insT
  • NC_000010.11:g.87960877_87960878insT
  • NG_007466.2:g.102439_102440insT
  • NM_000314.4:c.802-17_802-16insT
  • NM_000314.6:c.802-17_802-16insT
  • NM_001304717.2:c.1321-17_1321-16insT
  • NM_001304718.1:c.211-17_211-16insT
  • NW_013171807.1:g.176666_176667insT
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss289028905 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs34003473 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss289028905GMI|GMI_AK_INDEL_705853fwd/-/Ttttctttttcttttctttttttttttttttaggacaaaatgtttcacttttgggtaaata12/20/1012/27/11137Genomicunknown
ss947263470SSIP|SSIP_indels_1089720633fwd/-/Tgtcatttcatttctttttcttttctttttttttttttttaggacaaaatg01/03/1402/24/15142Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs34003473|allelePos=501|totalLen=1001|taxid=9606|snpclass=2|alleles='-/T'|mol=Genomic|build=142
 AGAAGTAAAC ATGTATTTGC CATGCGTCAT CAGGGAAGTT GCACTCACCG TCCAAGAACT
 TTTGTTAAAG TAAATCTTGG AATAGGTAGC TCATTTGAAA TGTAGAAAAA ATTAAATCCA
 TATCTGAATT TTGTTTATAT GTATGTACAC GTAAACTAAA AACGTATTTA AAGCTAGTAT
 TAGATGAGAA AAGAGGTTTT TTTACTTAAA ATTTTAAGGC AAAAGTAGTT TATCTTAGAT
 CTTGTGAGAT TGTATTTTTG GTTTAAAATT TGAGAATTTG AGTGAAGAAA AATCATGTGA
 ATGAAAATGC AACAGATAAC TCAGATTGCC TTATAATAGT CTTTGTGTTT ACCTTTATTC
 AGAATATCAA ATGATAGTTT ATTTTGTTGA CTTTTTGCAA ATGTTTAACA TAGGTGACAG
 ATTTTCTTTT TTAAAAAAAT AAAACATCAT TAATTAAATA TGTCATTTCA TTTCTTTTTC
 TTTTCTTTTT TTTTTTTTTT
 N
 AGGACAAAAT GTTTCACTTT TGGGTAAATA CATTCTTCAT ACCAGGACCA GAGGAAACCT
 CAGAAAAAGT AGAAAATGGA AGTCTATGTG ATCAAGAAAT CGATAGCATT TGCAGTATAG
 AGCGTGCAGA TAATGACAAG GAATATCTAG TACTTACTTT AACAAAAAAT GATCTTGACA
 AAGCAAATAA AGACAAAGCC AACCGATACT TTTCTCCAAA TTTTAAGGTC AGTTAAATTA
 AACATTTTGT GGGGGTTGTT GACTTGTATG TATGTGATGT GTGTTTAATT CTAGGAGTAC
 AGCTGATGAA GAACTTGCTT GACAAGTTTT TAACTTATGT ATTATTTCGA AGCAGTGTTT
 ACGTAGCAGT AACATGAAAG TTTCTAATAA AATACCCAAT GTACACAGCG TCAAAAAAGC
 TGCATTTTTC CTTTTCCTAA TTCTTCGTTG TTTGCTGAAA TCTGGGGCAA AGGTGCGGGA
 GGGGGCTAAA TGACTGGGAT

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterUNKNOWNUNKNOWNUNKNOWN