NCBI
dbSNP
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Reference SNP (refSNP) Cluster Report: rs34260203                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:126/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqWith1000GenomeData
Allele
Variation Class:DIV:
deletion/insertion variation
RefSNP Alleles:-/A (REV)
Allele Origin:
Ancestral Allele:A
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:T=0.3037/1521 (1000 Genomes)
T=0.3858/48445 (TOPMED)
HGVS Names
  • CM000663.2:g.897581delT
  • NC_000001.10:g.832961delT
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss229263673 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs34260203 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss154521631GMI|GMI_INDEL-11rev/-/Tttttcccctatctgacagccgactcactgatttttttctacattcttttttagtatgaat06/24/0906/24/09137Genomicunknown
ss193081954BUSHMAN|BUSHMAN-chr1-822823-822824rev/-/Tttttcccctatctgacagccgactcactgatttttttctacattcttttttagtatgaat02/16/1002/16/10137Genomicunknown
ss229263673GMI|GMI_NA10851_INDEL_14rev/-/Tttttcccctatctgacagccgactcactgatttttttctacattcttttttagtatgaat04/26/1012/20/10137Genomicunknown
ss287939387GMI|GMI_AK_INDEL_104rev/-/Tttttcccctatctgacagccgactcactgatttttttctacattcttttttagtatgaat12/20/1012/22/11137Genomicunknown
ss294562340PJP|DIP_44_chr1_822824rev/-/Tttttcccctatctgacagccgactcactgatttttttctacattcttttttagtatgaat01/21/1101/21/11137Genomicunknown
ss294562341PJP|DIP_45_chr1_822831rev/-/Tctatctgacagccgactcactgatttttttctacattcttttttagtatgaatagcttct01/21/1101/21/11134Genomicunknown
ss3259975071000GENOMES|JPTCHB_chr1_822823_indelrev/-/Tttttcccctatctgacagccgactcactgatttttttctacattcttttttagtatgaat03/11/1104/01/11137Genomicunknown
ss550899149LUNTER|YRI_1_822824-822824rev/-/Tccctatctgacagccgactcactgatttttttctacattcttttttagta11/21/1211/21/12138Genomic95 %
ss550903137LUNTER|CEU_1_822824-822824rev/-/Tccctatctgacagccgactcactgatttttttctacattcttttttagta11/21/1211/21/12138Genomic95 %
ss552739025LUNTER|JPTCHB_1_822824-822824rev/-/Tccctatctgacagccgactcactgatttttttctacattcttttttagta11/21/1211/21/12138Genomic95 %
ss663209402SSMP|indel_1_832961rev/-/Tccctatctgacagccgactcactgatttttttctacattcttttttagta12/18/1202/09/15144Genomicunknown
ss666080089BILGI_BIOE|indel_1_832961-832961rev/-/Tccctatctgacagccgactcactgatttttttctacattcttttttagta12/26/1212/26/12138Genomicunknown
ss974769843EVA-GONL|EVA-GONL_rs34260203rev/-/Tccctatctgacagccgactcactgatttttttctacattcttttttagta04/23/1404/23/14142Genomicunknown
ss13676454691000GENOMES|PHASE3_V1_6040byFreqrev/-/Tccctatctgacagccgactcactgatttttttctacattcttttttagta08/16/1408/07/15142Genomicunknown
ss1536213903DDI|DDI_rs34260203rev/-/Tccctatctgacagccgactcactgatttttttctacattcttttttagta12/24/1412/24/14144Genomicunknown
ss1573868304EVA_GENOME_DK|EVA_GENOME_DK_gatk_indels_rs34260203rev/-/Tccctatctgacagccgactcactgatttttttctacattcttttttagta02/19/1502/19/15144Genomicunknown
ss1700143190EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_1_832960_791rev/-/Tccctatctgacagccgactcactgatttttttctacattcttttttagta03/04/1503/06/15144Genomicunknown
ss1700153743EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_1_832960_791rev/-/Tccctatctgacagccgactcactgatttttttctacattcttttttagta03/04/1503/06/15144Genomicunknown
ss1793709421HAMMER_LAB|Hsieh_397rev/-/Tccctatctgacagccgactcactgatttttttctacattcttttttagta07/15/1507/15/15146Genomicunknown
ss2030297757JJLAB|INDEL91rev/-/Tccctatctgacagccgactcactgatttttttctacattcttttttagta08/30/1608/31/16149Genomicunknown
ss2624264893SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV573rev/-/Tccctatctgacagccgactcactgatttttttctacattcttttttagta01/06/1701/06/17151Genomicunknown
ss2750645636GNOMAD|rs34260203rev/-/Tccctatctgacagccgactcactgatttttttctacattcttttttagta05/17/1705/17/17151Genomicunknown
ss2986150538SWEGEN|NC_000001.10:832961_832961delrev/-/Tccctatctgacagccgactcactgatttttttctacattcttttttagta05/30/1705/30/17151Genomicunknown
ss3063573540MCHAISSO|HG00514136rev/-/Tccctatctgacagccgactcactgatttttttctacattcttttttagta09/15/1709/15/17151Genomic92 %
ss3064386051MCHAISSO|HG00733107rev/-/Tccctatctgacagccgactcactgatttttttctacattcttttttagta09/15/1709/15/17151Genomic92 %
ss3065282525MCHAISSO|NA19240151rev/-/Tccctatctgacagccgactcactgatttttttctacattcttttttagta09/15/1709/15/17151Genomic92 %

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs34260203|allelePos=501|totalLen=1001|taxid=9606|snpclass=2|alleles='-/A'|mol=Genomic|build=151
 TAAGAAGGGG AGCTCGGAAG CATCAGGGTA ACAATGGGAC AGGCGTGGGG TCTGGTTCGT
 TTCACCTTGG AACCTTTTCA CACTGATGAG GAGGAGGAAG GAGAGTATAG CGACGTAACA
 GAAGAGGTTA CAGACCAGGT TTGTTTGCCA GCTAAAGCTG AAGCGGCAAA GGAGGGAGAG
 GTTCATCCCT ACCCTTCTGC ACCCCCTCAT TATTATTTTG AAGAAAATGA CCCTCCAGGT
 ATTTCTTTTC CAGAGGACTG TGGGCGAAAA GTAGTTGCCC CAGTGACTGA GCAGCGCCTG
 GAGCGACTGC TCTTAGTTCT ATTCAGGCAG GAATTCAGCA AGCTAGAAGA GAGGGTGATT
 TAGAGGCTTG GCAGTTCCCT GTTAGAATAC ACCCCCCAGA TCAACAGGGA GATATTATAG
 CTACATTTGA ACCTTTTCCT TTTAAATTAC TCAAAGAATT TAAAGAAGCT ATTCATACTA
 AAAAAGAATG TAGAAAAAAA
 N
 TCAGTGAGTC GGCTGTCAGA TAGGGGAAAA AAGAGAACTG CTAAGCTGAA ATATGTCCAA
 AATGTAAAAA AGGAAATCAT TGGGCTAACC AATGTCACTC TAAGTTTGAT GAAGAACGGA
 ACCCGATTTC GGGAAACACC ATGAGGGGCC CATCCTAGGC CCGTTCTAAA CCGGGGCATT
 TCCAACTCAG GCCATTCCCT CCCCACCGTA CAATGTCTGT CCCCTGCCAC AGCTGGTAGT
 GTTGCAGTAG ATTTATGCTG CACAAAAGCT GTGAGCCCTC TGCCTGGGGA ACCCCTGCAA
 AAGGTCCCAA CAGGAGTCTG TGGACCCTTG CCAGCAGGGA CGATAGGATT ACTTTTAGAA
 AGGTCTAGTT TAAGTTTAAA AGGGGTACAA ATACATACAG GAGTCACTGA TTCAGATCAC
 AATGGGGAAA TTCAAATTGT TATATCTACT TCTGTTCCCT GGAAAGCAGA GCCAGGAGAT
 CGGCTCCTGA TTGTGCCATA

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] Note: rs34260203 allele is reverse to the genome back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
Source-/-
HWP-
A
ss1367645469EAS 1008AF 0.723200020.27680001
EUR 1006AF 0.476100000.52389997
AFR 1322AF 0.938000020.06200000
AMR 694AF 0.639800010.36020002
SAS 978AF 0.608399990.39160001
ss193081954BUSHMAN_POP2 2IG1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0.423+/-0.1810000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqWith1000GenomeDataUNKNOWNUNKNOWNUNKNOWN