NCBI
dbSNP
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Reference SNP (refSNP) Cluster Report: rs4618082                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:129/151
Map to Genome Build:108/Weight 1
Validation Status:byCluster
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/T (FWD)
Allele Origin:
Ancestral Allele:T
Variation Viewer:link to VariationViewer
Clinical Significance:NA
NA
HGVS Names
  • CM000664.2:g.69879166T>A
  • NC_000002.11:g.70106298T>A
  • NC_000002.12:g.69879166T>A
  • NM_178439.4:c.*162T>A
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss6263511 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs4618082 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss6263511SC_JCM|NT_022184.9_401935fwd/TA/Ttgacaaaggccttatgaactgtacagacaaacagaagattattcttatcctcattgcatt01/10/0310/10/03149Genomicunknown
ss75301570ILLUMINA|ILMN_Human_1M_rs4618082fwd/A/Ttgacaaaggccttatgaactgtacagacaaacagaagattattcttatcctcattgcatt08/28/0708/29/07129Genomicunknown
ss119481298KRIBB_YJKIM|KHS1643545fwd/A/Ttgacaaaggccttatgaactgtacagacaaacagaagattattcttatcctcattgcatt02/04/0902/04/09131Genomicunknown
ss123187946ILLUMINA|HumanCNV370v1_C_rs4618082fwd/A/Ttgacaaaggccttatgaactgtacagacaaacagaagattattcttatcctcattgcatt04/14/0904/15/09131Genomicunknown
ss154302763ILLUMINA|Human610_Quadv1_B_rs4618082-128_T_F_1514286077fwd/A/Ttgacaaaggccttatgaactgtacagacaaacagaagattattcttatcctcattgcatt06/18/0906/20/09131Genomicunknown
ss160691543ILLUMINA|HumanOmni1-Quad_v1-0_B_rs4618082-128_T_F_1514286077fwd/A/Ttgacaaaggccttatgaactgtacagacaaacagaagattattcttatcctcattgcatt08/04/0910/04/09131Genomicunknown
ss171837737ILLUMINA|HumanCNV370-Quadv3_C_rs4618082-128_T_F_1514286077fwd/A/Ttgacaaaggccttatgaactgtacagacaaacagaagattattcttatcctcattgcatt10/01/0910/04/09132Genomicunknown
ss173762124ILLUMINA|Human1M-Duov3_B_rs4618082-128_T_F_1514286077fwd/A/Ttgacaaaggccttatgaactgtacagacaaacagaagattattcttatcctcattgcatt10/01/0910/04/09132Genomicunknown
ss480981667ILLUMINA|HumanOmni2.5-4v1_B_rs4618082-128_T_F_1617298189fwd/A/Taaggccttatgaactgtacagacaaacagaagattattcttatcctcatt01/30/1210/28/16137Genomicunknown
ss481002152ILLUMINA|HumanOmniExpress-12v1_C_rs4618082-131_T_F_1857630420fwd/A/Taaggccttatgaactgtacagacaaacagaagattattcttatcctcatt01/30/1210/27/16137Genomicunknown
ss481980338ILLUMINA|HumanOmni1-Quad_v1-0_C_rs4618082-131_T_F_1865705334fwd/A/Taaggccttatgaactgtacagacaaacagaagattattcttatcctcatt01/30/1208/28/15146Genomicunknown
ss485285752ILLUMINA|HumanOmni2.5-4v1_D_rs4618082-131_T_F_1857630420fwd/A/Taaggccttatgaactgtacagacaaacagaagattattcttatcctcatt01/30/1210/28/16137Genomicunknown
ss537250161ILLUMINA|HumanOmni5-4v1_B_rs4618082-131_T_F_1893175840fwd/A/Taaggccttatgaactgtacagacaaacagaagattattcttatcctcatt06/22/1208/28/15146Genomicunknown
ss778342330ILLUMINA|HumanOmni25Exome-8v1_A_rs4618082-131_T_F_1865705334fwd/A/Taaggccttatgaactgtacagacaaacagaagattattcttatcctcatt05/30/1307/09/15146Genomicunknown
ss783088778ILLUMINA|HumanOmni2.5-4v1_H_rs4618082-131_T_F_1857630420fwd/A/Taaggccttatgaactgtacagacaaacagaagattattcttatcctcatt05/30/1307/28/15146Genomicunknown
ss784046235ILLUMINA|HumanOmniExpressExome-8v1_A_rs4618082-131_T_F_1893175840fwd/A/Taaggccttatgaactgtacagacaaacagaagattattcttatcctcatt05/31/1306/19/15146Genomicunknown
ss825652754ILLUMINA|HumanCNV370v1_C_rs4618082-111_T_F_IFA1185318938:1185318941fwd/A/Taaggccttatgaactgtacagacaaacagaagattattcttatcctcatt06/24/1311/21/14147Genomicunknown
ss832347226ILLUMINA|HumanOmniExpress-12v1_H_rs4618082-131_T_F_1857630420fwd/A/Taaggccttatgaactgtacagacaaacagaagattattcttatcctcatt09/17/1306/18/15146Genomicunknown
ss833796940ILLUMINA|HumanOmni2.5-8v1_A_rs4618082-131_T_F_1865705334fwd/A/Taaggccttatgaactgtacagacaaacagaagattattcttatcctcatt09/18/1307/28/15146Genomicunknown
ss1752367216ILLUMINA|OmniExpressExome-8v1-1_B_rs4618082-131_T_F_1893175840fwd/A/Taaggccttatgaactgtacagacaaacagaagattattcttatcctcatt05/27/1506/09/15146Genomicunknown
ss2633630484ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs4618082-131_T_F_18931758fwd/A/Taaggccttatgaactgtacagacaaacagaagattattcttatcctcatt02/02/1702/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs4618082|allelePos=201|totalLen=401|taxid=9606|snpclass=1|alleles='A/T'|mol=Genomic|build=151
 TGTAACTTCT TGTATATATC ACCAGAAAAA AAGAATTGAA AATAATCGTC ACCCAGAAAA
 TCCAGAAAAC TGAAGATTTC ATCAGTTGGA AACAGTAGCA CTTTGAAAAC TTTTTAGGCC
 AGCTTTAATT TAATGGCCCT ACTGATATTC ACATCGAAGG TGACTAACAA TGACAAAGGC
 CTTATGAACT GTACAGACAA
 W
 ACAGAAGATT ATTCTTATCC TCATTGCATT TCTATGCATA TGCGTAAGAA CATTTTAAAG
 CCAAGAAAAT ATCTGTCAAA CCATTTCTGT TAGAACGATG TCAATTCATG CTTTTAATTT
 AGCATCAATA GAAAATTGCT GTAGGTAAAT CTCACATTTA TCTGCAACAA AATATAGATT
 TAATTTTTAG CTTAAACTTT

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_022184.9
dbSNP Blast Analysis
UniGene Cluster ID
293971

  Population Diversity (Alleles in RefSNP orientation) back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceT/T
HWPT
ss6263511HapMap-CEUEuropean 120IG1.00000000 1.00000000
HapMap-HCBAsian 90IG1.00000000 1.00000000
HapMap-JPTAsian 90IG1.00000000 1.00000000
HapMap-YRISub-Saharan African 120IG1.00000000 1.00000000
ENSEMBL_Venter 2IG1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterUNKNOWNUNKNOWNUNKNOWN