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dbSNP
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Reference SNP (refSNP) Cluster Report: rs62101625                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:130/151
Map to Genome Build:108/Weight 1
Validation Status:byCluster
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:
Ancestral Allele:A
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:G=0.4014/50403 (TOPMED)
HGVS Names
  • CM000663.2:g.19004A>G
  • NC_000001.10:g.19004A>G
  • NC_000001.11:g.19004A>G
  • NR_024540.1:n.205-638T>C
  • NR_106918.1:n.-1568T>C
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss275679870 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs62101625 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss87152844BCMHGSC_JDW|JWB-2715336fwd/TA/Ggatgtgccaagtgcattcttgtgtgcttgctctcatggaacgccatttccccagacatcc02/26/0802/26/08130Genomicunknown
ss95802272HUMANGENOME_JCVI|1104753232828rev/BC/Tggatgtctggggaaatggcgttccatgagagcaagcacacaagaatgcacttggcacatc03/24/0807/01/08131Genomicunknown
ss205555432BCM-HGSC-SUB|BCM_CMT_1011-256769fwd/TA/Ggatgtgccaagtgcattcttgtgtgcttgctctcatggaacgccatttccccagacatcc03/15/1003/16/10132Genomicunknown
ss275679870GMI|GMI_AK_SNP_30fwd/A/Ggatgtgccaagtgcattcttgtgtgcttgctctcatggaacgccatttccccagacatcc12/16/1012/16/10142Genomicunknown
ss1573850677EVA_GENOME_DK|EVA_GENOME_DK_snv_rs201619486fwd/TA/Ggccaagtgcattcttgtgtgcttgctctcatggaacgccatttccccaga02/19/1502/19/15144Genomicunknown
ss2019497480JJLAB|SNP35fwd/TA/Ggccaagtgcattcttgtgtgcttgctctcatggaacgccatttccccaga08/29/1608/30/16149Genomicunknown
ss2750602161GNOMAD|rs62101625fwd/A/Ggccaagtgcattcttgtgtgcttgctctcatggaacgccatttccccaga05/17/1705/17/17151Genomicunknown
ss2986141530SWEGEN|NC_000001.10:g.19004A>Gfwd/A/Ggccaagtgcattcttgtgtgcttgctctcatggaacgccatttccccaga05/30/1705/30/17151Genomicunknown
ss3343271490CSHL|rs201619486fwd/A/Ggccaagtgcattcttgtgtgcttgctctcatggaacgccatttccccaga10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs62101625|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 CCAGGGCCGA TCTTGGTGCC ATCCAGGGGG CCTCTACAAG GATAATCTGA CCTGCAGGGT
 CGAGGAGTTG ACGGTGCTGA GTTCCCTGCA CTCTCAGTAG GGACAGGCCC TATGCTGCCA
 CCTGTACATG CTATCTGAAG GACAGCCTCC AGGGCACACA GAGGATGGTA TTTACACATG
 CACACATGGC TACTGATGGG GCAAGCACTT CACAACCCCT CATGATCACG TGCAGCAGAC
 AATGTGGCCT CTGCAGAGGG GGAACGGAGA CCGGAGGCTG AGACTGGCAA GGCTGGACCT
 GAGTGTCGTC ACCTAAATTC AGACGGGGAA CTGCCCCTGC ACATACTGAA CGGCTCACTG
 AGCAAACCCC GAGTCCCGAC CACCGCCTCA GTGTGGTCTA GCTCCTCACC TGCTTCCATC
 CTCCCTGGTG CGGGGTGGGC CCAGTGATAT CAGCTGCCTG CTGTTCCCCA GATGTGCCAA
 GTGCATTCTT GTGTGCTTGC
 R
 TCTCATGGAA CGCCATTTCC CCAGACATCC CTGTGGCTGG CTCCTGATGC CCGAGGCCCA
 AGTGTCTGAT GCTTTAAGGC ACATCACCCC ACTCATGCTT TTCCATGTTC TTTGGCCGCA
 GCAAGGCCGC TCTCACTGCA AAGTTAACTC TGATGCGTGT GTAACACAAC ATCCTCCTCC
 CAGTCGCCCC TGTAGCTCCC CTACCTCCAA GAGCCCAGCC CTTGCCCACA GGGCCACACT
 CCACGTGCAG AGCAGCCTCA GCACTCACCG GGCACGAGCG AGCCTGTGTG GTGCGCAGGG
 ATGAGAAGGC AGAGGCGCGA CTGGGGTTCA TGAGGAAGGG CAGGAGGAGG GTGTGGGATG
 GTGGAGGGGT TTGAGAAGGC AGAGGCGCGA CTGGGGTTCA TGAGGAAAGG GAGGGGGAGG
 ATGTGGGATG GTGGAGGGGC TGCAGACTCT GGGCTAGGGA AAGCTGGGAT GTCTCTAAAG
 GTTGGAATGA ATGGCCTAGA

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
ABBA01128546
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/G
HWPA
G
ss95802272J. Craig Venter 2IG1.00000000 0.500000000.50000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0.500+/-00000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterUNKNOWNUNKNOWNUNKNOWN