NCBI
dbSNP
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This legacy RefSNP page contains old data from dbSNP build 151 (March 2018) and is no longer maintained. Please update your links and bookmarks to use the re-designed RefSNP Report page.
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Reference SNP (refSNP) Cluster Report: rs6702910                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitWith1000GenomeData
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (FWD)
Allele Origin:
Ancestral Allele:C
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:T=0.4169/2088 (1000 Genomes)
C=0.5000/62783 (TOPMED)
HGVS Names
  • CM000663.2:g.99593479C>T
  • NC_000001.10:g.100059035C>T
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss9903423 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs6702910 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss9903423BCM_SSAHASNP|chr1.NT_028050.12_932706byFreqfwd/BC/Taagcatttgcagaacaaattccataagatatttattaacctaagaaagtacatgctaaaa06/27/0310/25/06116Genomicunknown
ss20472351SSAHASNP|WGSA-200403-chr1.chr1.NT_028050.13_8247979fwd/BC/Taagcatttgcagaacaaattccataagatatttattaacctaagaaagtacatgctaaaa03/18/0403/18/04121Genomicunknown
ss41198519ABI|hCV29592043fwd/BC/Taagcatttgcagaacaaattccataagatatttattaacctaagaaagtacatgctaaaa07/16/0507/17/05126Genomicunknown
ss87656523BCMHGSC_JDW|JWB-0092411fwd/BC/Taagcatttgcagaacaaattccataagatatttattaacctaagaaagtacatgctaaaa02/26/0802/26/08129Genomicunknown
ss97961339HUMANGENOME_JCVI|1103675173808fwd/BC/Taagcatttgcagaacaaattccataagatatttattaacctaagaaagtacatgctaaaa03/30/0803/30/08130Genomicunknown
ss102767821BGI|BGI_rs6702910fwd/BC/Taagcatttgcagaacaaattccataagatatttattaacctaagaaagtacatgctaaaa06/04/0806/16/09131Genomicunknown
ss1084536881000GENOMES|CEU.trio.12.15.2008_126755_chr1_99831623fwd/BC/Taagcatttgcagaacaaattccataagatatttattaacctaagaaagtacatgctaaaa12/15/0812/15/08130Genomicunknown
ss1108910461000GENOMES|NA19240_2008_12_16_116581_chr1_99831623fwd/BC/Taagcatttgcagaacaaattccataagatatttattaacctaagaaagtacatgctaaaa12/17/0812/17/08130Genomicunknown
ss118919209ILLUMINA-UK|NA18507_000115556_NCBI36.1_chr1_99831623fwd/BC/Taagcatttgcagaacaaattccataagatatttattaacctaagaaagtacatgctaaaa01/21/0901/21/09130Genomic99 %
ss138045099ENSEMBL|ENSSNP11592082fwd/BC/Taagcatttgcagaacaaattccataagatatttattaacctaagaaagtacatgctaaaa05/15/0905/16/09131Genomicunknown
ss138842482ENSEMBL|ENSSNP294819fwd/BC/Taagcatttgcagaacaaattccataagatatttattaacctaagaaagtacatgctaaaa12/08/0810/16/09131Genomicunknown
ss155415571GMI|GMI_SNP_36345920fwd/BC/Taagcatttgcagaacaaattccataagatatttattaacctaagaaagtacatgctaaaa06/24/0906/24/09131Genomicunknown
ss160799895ILLUMINA|HumanOmni1-Quad_v1-0_B_rs6702910-128_T_R_1569294824rev/TA/Gttttagcatgtactttcttaggttaataaatatcttatggaatttgttctgcaaatgctt08/04/0910/04/09131Genomicunknown
ss163739146COMPLETE_GENOMICS|NA19240_36_chr1_99831623fwd/BC/Taagcatttgcagaacaaattccataagatatttattaacctaagaaagtacatgctaaaa09/29/0909/29/09132Genomicunknown
ss164869122COMPLETE_GENOMICS|NA07022_36_chr1_99831623fwd/BC/Taagcatttgcagaacaaattccataagatatttattaacctaagaaagtacatgctaaaa09/28/0909/30/09132Genomicunknown
ss166904721COMPLETE_GENOMICS|NA20431_36_chr1_99831623fwd/BC/Taagcatttgcagaacaaattccataagatatttattaacctaagaaagtacatgctaaaa09/30/0909/30/09132Genomicunknown
ss205079381BCM-HGSC-SUB|BCM_CMT_1011-20442fwd/BC/Taagcatttgcagaacaaattccataagatatttattaacctaagaaagtacatgctaaaa03/15/1003/15/10132Genomicunknown
ss2185486671000GENOMES|pilot_1_YRI_358350_chr1_99831623fwd/C/Taagcatttgcagaacaaattccataagatatttattaacctaagaaagtacatgctaaaa04/22/1004/22/10132Genomicunknown
ss2306567501000GENOMES|pilot_1_CEU_261379_chr1_99831623fwd/C/Taagcatttgcagaacaaattccataagatatttattaacctaagaaagtacatgctaaaa05/01/1005/01/10132Genomicunknown
ss2383237151000GENOMES|pilot_1_CHB+JPT_208792_chr1_99831623fwd/C/Taagcatttgcagaacaaattccataagatatttattaacctaagaaagtacatgctaaaa05/01/1005/01/10132Genomicunknown
ss275945326GMI|GMI_AK_SNP_265489fwd/C/Taagcatttgcagaacaaattccataagatatttattaacctaagaaagtacatgctaaaa12/16/1012/16/10137Genomicunknown
ss290580501PJP|SNP_86859_chr1_99831623fwd/C/Taagcatttgcagaacaaattccataagatatttattaacctaagaaagtacatgctaaaa01/21/1101/21/11134Genomicunknown
ss481323431ILLUMINA|HumanOmni2.5-4v1_B_rs6702910-128_T_R_1767320407fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc01/30/1210/28/16137Genomicunknown
ss481348621ILLUMINA|HumanOmniExpress-12v1_C_rs6702910-131_T_R_1858047418fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc01/30/1210/27/16137Genomicunknown
ss482329911ILLUMINA|HumanOmni1-Quad_v1-0_C_rs6702910-131_T_R_1865289679fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc01/30/1208/28/15146Genomicunknown
ss485456845ILLUMINA|HumanOmni2.5-4v1_D_rs6702910-131_T_R_1858047418fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc01/30/1210/27/16137Genomicunknown
ss537380762ILLUMINA|HumanOmni5-4v1_B_rs6702910-131_T_R_1895025263fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc06/22/1208/28/15146Genomicunknown
ss554480693TISHKOFF|snp_chr1_100059035fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc11/22/1211/22/12138Genomicunknown
ss648253972SSMP|1_100059035fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc12/14/1202/09/15138Genomicunknown
ss778577048ILLUMINA|HumanOmni25Exome-8v1_A_rs6702910-131_T_R_1865289679fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc05/30/1307/09/15146Genomicunknown
ss783173900ILLUMINA|HumanOmni2.5-4v1_H_rs6702910-131_T_R_1858047418fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc05/30/1307/28/15146Genomicunknown
ss784129367ILLUMINA|HumanOmniExpressExome-8v1_A_rs6702910-131_T_R_1895025263fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc05/31/1306/18/15146Genomicunknown
ss832433468ILLUMINA|HumanOmniExpress-12v1_H_rs6702910-131_T_R_1858047418fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc09/17/1306/18/15146Genomicunknown
ss834034133ILLUMINA|HumanOmni2.5-8v1_A_rs6702910-131_T_R_1865289679fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc09/18/1307/28/15146Genomicunknown
ss975483064EVA-GONL|EVA-GONL_rs6702910fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc04/23/1404/23/14142Genomicunknown
ss1068127738JMKIDD_LAB|HGDP_WGS_chr1_100059035fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc07/10/1407/10/14142Genomicunknown
ss12921079731000GENOMES|PHASE3_V1_2885817fwd/C/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc08/16/1408/16/14142Genomicunknown
ss1425911001DDI|DDI_rs6702910fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc11/04/1411/04/14144Genomicunknown
ss1574271609EVA_GENOME_DK|EVA_GENOME_DK_snv_rs6702910fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc02/19/1502/19/15144Genomicunknown
ss1584861369EVA_DECODE|EVA_DECODE_1_99831623_732119_rs6702910fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc03/02/1503/02/15144Genomicunknown
ss1600817109EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_1_100059035_1584051fwd/C/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc03/04/1503/04/15144Genomicunknown
ss1643811142EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_1_100059035_1584051fwd/C/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc03/04/1503/04/15144Genomicunknown
ss1751859116ILLUMINA|OmniExpressExome-8v1-1_B_rs6702910-131_T_R_1895025263fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc05/27/1506/09/15146Genomicunknown
ss1794807716HAMMER_LAB|Hsieh_305475fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc07/15/1507/15/15146Genomicunknown
ss1918682653WEILL_CORNELL_DGM|SNV:chr1:100059035fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc10/16/1510/16/15147Genomicunknown
ss1946002825ILLUMINA|HumanCoreExome-12v1-0_C_rs6702910-131_T_R_1895025263fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc10/29/1510/29/15147Genomicunknown
ss1958296795ILLUMINA|rs6702910-131_T_R_1895025263fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc11/13/1511/13/15147Genomicunknown
ss1966820789GENOMED|rs6702910fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc02/16/1602/16/16147Genomicunknown
ss2019862825JJLAB|SNP365380fwd/BC/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc08/29/1608/30/16149Genomicunknown
ss2147881528USC_VALOUEV|NC_000001.10:g.100059035C>Tfwd/C/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc11/17/1611/17/16150Genomicunknown
ss2165031744HUMAN_LONGEVITY|HLI-1-99593479-C-Tfwd/C/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc11/18/1611/18/16150Genomicunknown
ss2632553627ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs6702910-131_T_R_18950252fwd/C/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc02/02/1702/02/17151Genomicunknown
ss2697808859GRF|rs6702910fwd/C/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc02/13/1702/13/17151Genomicunknown
ss2710678276ILLUMINA|Consortium-OncoArray_15047405_A_rs6702910-131_T_R_1895025263fwd/C/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc03/22/1703/22/17151Genomicunknown
ss2758638580GNOMAD|rs6702910fwd/C/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc05/17/1705/17/17151Genomicunknown
ss2987305768SWEGEN|NC_000001.10:g.100059035C>Tfwd/C/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc05/30/1705/30/17151Genomicunknown
ss3021113799ILLUMINA|MEGA_Consortium_v2_15070954_A2_rs6702910-138_T_R_2276652867fwd/C/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc06/28/1706/28/17151Genomicunknown
ss3023695000BIOINF_KMB_FNS_UNIBA|1.99593479C>Tfwd/C/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc07/05/1707/05/17151Genomicunknown
ss3343595951CSHL|rs6702910fwd/C/Ttttgcagaacaaattccataagatatttattaacctaagaaagtacatgc10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs6702910|allelePos=851|totalLen=1051|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=151
 ACATACCAAT AATCATAATT AATGTAAATA CATTAAACCA GCCATTAAAT AACAGATATC
 ATCAAGAAAA AAATATATAT ATGTGCAGTT TTAAAAAACA CATTAAAAGT ATACAGAAAG
 TTTGAAGATA ATGGGCTAAA AAAGATGTAT CATAAGAATA CTAACCCAAG AAAGCTCATG
 tttcaaacaa gaaatatttt aaagggaaat aactacaaga aaaacggtgg gcacaaataa
 taaaaaagag cattccacta agttacaata ataaacacat atacatctaa caatttggcc
 tcaaatttat aaagctaaaa ctaatagaat aatgagaact aaacaaaata acaatgacag
 tggacaattt ttaaatacct ctatcaGAAA CATATCAAGC AGAAAAAGAA ACTGAGATTT
 AGAAAACTGA ggctgggcac agtggctcat gcctgtaatc ccagcatttt gagaggctga
 ggcagacaga ttgcttaagt ttaggagttt gaggccagtc tgggcaacat ggaaaaaacc
 tacctctaca aaagatacaa aagttagctg ggcatggtgg catgcacctg tagccccagc
 tacttggggg gctgaggtga gaggatctct tgagcctggg aggtcaaggc tacagtgagc
 catgattgca cccctgtact ccagcctggg caacagagca agaccctgtc tcaaaaaaag
 aaaaaagaaa aTTCAGACAA CATATTTTGA CAAGATTAAT CCaatAGAGA TAAATAGAAT
 CCTGCACCTC ACAAATAGAG AACATTTTTA TGCATATATG AAGCATTTGC AGAACAAATT
 CCATAAGATA
 Y
 TTTATTAACC TAAGAAAGTA CATGCTAAAA CTACTATATG CCTGGCCATT ATCTAAAGAG
 AAGAGAGTTC TTAAGAAGAG GTGGTTAGAG GGAAAACAGA GGTGAAAGAA ATATATTCTA
 GTTTATTTAG TTGGCAATTA CTTGTGGGGC ATCTAGTATG TTCCATTCTC CCAACTGGTC
 TTATAAAAAG TATCCCGCAT

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_028050 ABBA01045451
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC/C
C/T
T/T
HWPC
T
ss118919209YRI 2IG 1.00000000 0.500000000.50000000
ss1292107973EAS 1008AF 0.690499960.30950001
EUR 1006AF 0.392600000.60740000
AFR 1322AF 0.671000000.32900000
AMR 694AF 0.456799980.54320002
SAS 978AF 0.639100020.36090001
ss138045099ENSEMBL_Watson 2IG 1.00000000 0.500000000.50000000
ss138842482ENSEMBL_Venter 2IG 1.00000000 1.00000000
ss163739146YRISub-Saharan African 2IG 1.00000000 0.500000000.50000000
ss164869122CEUEuropean 2IG 1.00000000 1.00000000
ss166904721PGP 2IG 1.00000000 1.00000000
ss218548667pilot_1_YRI_low_coverage_panel 118AF 0.661016940.33898306
ss230656750pilot_1_CEU_low_coverage_panel 120AF 0.375000000.62500000
ss238323715pilot_1_CHB+JPT_low_coverage_panel 120AF 0.716666640.28333333
ss97961339J. Craig Venter 2IG 1.00000000 1.00000000
ss9903423HapMap-CEUEuropean 110IG0.163636360.545454560.290909080.438578000.436363640.56363636
HapMap-HCBAsian 82IG0.658536610.195121940.146341460.004998000.756097560.24390244
HapMap-JPTAsian 80IG0.425000010.500000000.075000000.402784000.675000010.32499999
HapMap-YRISub-Saharan African 104IG0.480769220.423076930.096153851.000000000.692307710.30769232
ENSEMBL_Watson 2IG1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0.486+/-0.0820000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN