NCBI
dbSNP
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This legacy RefSNP page contains old data from dbSNP build 151 (March 2018) and is no longer maintained. Please update your links and bookmarks to use the re-designed RefSNP Report page.
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Reference SNP (refSNP) Cluster Report: rs7393340                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterwith2hitwithHapMapFreq
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:
Ancestral Allele:G
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:A=0.00002/3 (TOPMED)
HGVS Names
  • CM000672.2:g.50703192G>A
  • NC_000010.10:g.52462952G>A
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss11171413 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs7393340 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss11171413WI_SSAHASNP|chr10.NT_008583.15_1014107fwd/TA/Gtctcgtcaagccctgcagatgtctagtccctcaagccctacagatgtctccagcacagat07/03/0310/10/03116Genomicunknown
ss12953969SC_SNP|NT_008583.15_1014107fwd/TA/Gtctcgtcaagccctgcagatgtctagtccctcaagccctacagatgtctccagcacagat10/22/0310/31/03119Genomicunknown
ss17411281CSHL-HAPMAP|CSHL-HuCC-200402.chr10.NT_008583.16_1014107fwd/TA/Gtctcgtcaagccctgcagatgtctagtccctcaagccctacagatgtctccagcacagat02/19/0403/04/04120Genomicunknown
ss19189570CSHL-HAPMAP|CSHL-HuDD-200402.chr10.NT_008583.16_1014107fwd/TA/Gtctcgtcaagccctgcagatgtctagtccctcaagccctacagatgtctccagcacagat02/20/0403/04/04120Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs7393340|allelePos=648|totalLen=872|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 TTAGGTTAGA ATATAAccaa ggcgggtgga tcacctgagg ttgggagttc aagaccagcc
 tgaccaacat ggagaaaccc catctctact aaaaatacaa aattagctgg gcatggtggc
 acatgcctgt aatcccagtt actcgggagg ctgaggcagg agaatcattt gaacccagaa
 ggcagaggtt gcagtgagct gggatcgtgc cattgcacac cagcctgggc accaagagcc
 aaacctcatc tcaaaaaaag taaataaata aataaaaaTG ACTAATAAAT ACTTACTGAA
 AGTATAAGTA TAAAAAACTT TAATTATGTT AATTATGAGA TTTTAAAACT GTATTACTGG
 AGAAAGAGAC CAAATCTCCT CATAATACtt tttttgttaa tttatttaat aataaaGATG
 AACATAAACA CCTGTGCAAT TCAGTGTTTA AAGTTTGCCA AGGTATATGT ATATATTTTT
 CCCAACGTTG atgctgtgag aagcccaagc catggagagg ccccaggcag gtgctctggt
 caacagccca agctaaatgc ccagccaaca ccagcatctg caaccagccc tgtgcgtgag
 gctttgcaga tgtctagtct cgtcaagccc tgcagatgtc tagtccc
 R
 tcaagcccta cagatgtctc cagcACAGAT AGAGCCTACA GATGTCTCCC CGCGAAACCA
 CACAGCCAAG TCCAGGCGGA AAATGTGAAA GATGTTTCTA CCAAGCCACT GAGTTTCTGG
 GTGGTTTGTT TTACAGTAAT AGAGGAGAAC CAGAATGGTC TGTTCCTGCA CTCTCCAGTG
 GTCCCCTATG TTCAAACACT CTGCTTAGCA AGCTTCATCA CCCA

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_008583
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterwith2hitwithHapMapFreq
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN