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dbSNP
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Reference SNP (refSNP) Cluster Report: rs869096886                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:147/151
Map to Genome Build:108/Weight
Validation Status:byCluster
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:
Ancestral Allele:Not available
Variation Viewer:link to VariationViewer
Clinical Significance:NA
NA
HGVS Names
  • J01415.2:m.11251A>G
  • NC_012920.1:m.11251A>G
  • YP_003024035.1:p.Leu164=
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss2400908 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs869096886 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss2400908TSC-CSHL|TSC0444777byFreqfwd/TA/Gagtaggctcccttcccctactcatcgcactatttacactcacaacaccctaggctcacta06/14/0109/05/14147Genomicunknown
ss46525718BROAD|mt11251fwd/TA/Gagtaggctcccttcccctactcatcgcactatttacactcacaacaccctaggctcacta04/25/0507/21/05147Genomicunknown
ss66863424ILLUMINA|HumanHap550v1.1_MitoA11252Gfwd/TA/Gagtaggctcccttcccctactcatcgcactatttacactcacaacaccctaggctcacta11/14/0611/14/06147Genomicunknown
ss66931938ILLUMINA|HumanHap650Yv1.0_MitoA11252Gfwd/TA/Gagtaggctcccttcccctactcatcgcactatttacactcacaacaccctaggctcacta11/14/0611/14/06147Genomicunknown
ss68074732ILLUMINA|HumanHap250Sv1.0_MitoA11252Gfwd/TA/Gagtaggctcccttcccctactcatcgcactatttacactcacaacaccctaggctcacta12/06/0612/07/06147Genomicunknown
ss70458786ILLUMINA|HumanHap550v3.0__MitoA11252Grev/BC/Ttagtgagcctagggtgttgtgagtgtaaatagtgcgatgagtaggggaagggagcctact04/20/0703/29/08147Genomicunknown
ss70979326ILLUMINA|HumanHap650Yv3.0_MitoA11252Gfwd/TA/Gagtaggctcccttcccctactcatcgcactatttacactcacaacaccctaggctcacta04/23/0704/23/07147Genomicunknown
ss75896859ILLUMINA|ILMN_Human_1M_MitoA11252Gfwd/TA/Gagtaggctcccttcccctactcatcgcactatttacactcacaacaccctaggctcacta08/28/0708/29/07147Genomicunknown
ss484376862ILLUMINA|HumanOmni2.5-4v1_D_MitoA11252G-0_B_R_1852011184fwd/TA/Ggctcccttcccctactcatcgcactatttacactcacaacaccctaggct01/30/1210/28/16150Genomicunknown
ss536559235ILLUMINA|HumanOmni5-4v1_B_MitoA11252G-0_B_R_1852011184fwd/TA/Ggctcccttcccctactcatcgcactatttacactcacaacaccctaggct06/22/1208/28/15147Genomicunknown
ss1711594900EVA_MGP|EVA_XIMO_710660fwd/TA/Ggctcccttcccctactcatcgcactatttacactcacaacaccctaggct03/09/1503/09/15147Genomicunknown
ss1958161359ILLUMINA|MitoA11252G-0_B_R_1852011184fwd/TA/Ggctcccttcccctactcatcgcactatttacactcacaacaccctaggct11/13/1511/13/15147Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs869096886|allelePos=437|totalLen=1394|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=150
 AAAAACACAT AATTTGAATC AACACAACCA CCCACAGCCT AATTATTAGC ATCATCCCTC
 TACTATTTTT TAACCAAATC AACAACAACC TATTTAGCTG TTCCCCAACC TTTTCCTCCG
 ACCCCCTAAC AACCCCCCTC CTAATACTAA CTACCTGACT CCTACCCCTC ACAATCATGG
 CAAGCCAACG CCACTTATCC AGTGAACCAC TATCACGAAA AAAACTCTAC CTCTCTATAC
 TAATCTCCCT ACAAATCTCC TTAATTATAA CATTCACAGC CACAGAACTA ATCATATTTT
 ATATCTTCTT CGAAACCACA CTTATCCCCA CCTTGGCTAT CATCACCCGA TGAGGCAACC
 AGCCAGAACG CCTGAACGCA GGCACATACT TCCTATTCTA CACCCTAGTA GGCTCCCTTC
 CCCTACTCAT CGCACT
 R
 ATTTACACTC ACAACACCCT AGGCTCACTA AACATTCTAC TACTCACTCT CACTGCCCAA
 GAACTATCAA ACTCCTGAGC CAACAACTTA ATATGACTAG CTTACACAAT AGCTTTTATA
 GTAAAGATAC CTCTTTACGG ACTCCACTTA TGACTCCCTA AAGCCCATGT CGAAGCCCCC
 ATCGCTGGGT CAATAGTACT TGCCGCAGTA CTCTTGAAAC TAGGCGGCTA TGGTATAATA
 CGCCTCACAC TCATTCTCAA CCCCCTGACA AAACACATAG CCTACCCCTT CCTTGTACTA
 TCCCTATGAG GCATAATTAT AACAAGCTCC ATCTGCCTAC GACAAACAGA CCTAAAATCG
 CTCATTGCAT ACTCTTCAAT CAGCCACATA GCCCTCGTAG TAACAGCCAT TCTCATCCAA
 ACCCCCTGAA GCTTCACCGG CGCAGTCATT CTCATAATCG CCCACGGACT TACATCCTCA
 TTACTATTCT GCCTAGCAAA CTCAAACTAC GAACGCACTC ACAGTCGCAT CATAATCCTC
 TCTCAAGGAC TTCAAACTCT ACTCCCACTA ATAGCTTTTT GATGACTTCT AGCAAGCCTC
 GCTAACCTCG CCTTACCCCC CACTATTAAC CTACTGGGAG AACTCTCTGT GCTAGTAACC
 ACGTTCTCCT GATCAAATAT CACTCTCCTA CTTACAGGAC TCAACATACT AGTCACAGCC
 CTATACTCCC TCTACATATT TACCACAACA CAATGGGGCT CACTCACCCA CCACATTAAC
 AACATAAAAC CCTCATTCAC ACGAGAAAAC ACCCTCATGT TCATACACCT ATCCCCCATT
 CTCCTCCTAT CCCTCAACCC CGACATCATT ACCGGGTTTT CCTCTTGTAA ATATAGTTTA
 ACCAAAACAT CAGATTGTGA ATCTGACAAC AGAGGCTTAC GACCCCTTAT TTACCGA

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
G/G
HWPA
G
ss2400908HapMap-CEUEuropean 226IG0.840707960.159292040.001000000.840707960.15929204
HapMap-HCBAsian 90IG1.00000000 1.00000000
HapMap-JPTAsian 88IG1.00000000 1.00000000
HapMap-YRISub-Saharan African 120IG1.00000000 1.00000000
HAPMAP-GIH 176IG0.965909060.034090910.001000000.965909060.03409091
HAPMAP-LWK 178IG0.988764050.011235960.001000000.988764050.01123596
HAPMAP-MKK 286IG0.993007000.006993010.001000000.993007000.00699301
HAPMAP-TSI 176IG0.784090940.215909090.001000000.784090940.21590909

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
-1.000+/-00000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterUNKNOWNUNKNOWNUNKNOWN