NCBI
dbSNP
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This legacy RefSNP page contains old data from dbSNP build 151 (March 2018) and is no longer maintained. Please update your links and bookmarks to use the re-designed RefSNP Report page.
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Reference SNP (refSNP) Cluster Report: rs9701779                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:119/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreq
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:
Ancestral Allele:Not available
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:G=0.0293/3677 (TOPMED)
HGVS Names
  • CM000663.2:g.629994A>G
  • NC_000001.10:g.565374A>G
  • NC_000001.11:g.629994A>G
  • NG_032768.1:g.455A>G
  • NR_125957.1:n.-985T>C
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss275680272 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs9701779 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss13505191SC_JCM|chr1.NT_034471.3_44006fwd/TA/Ggccccctttcacttctgagtcccagaggttcccaaggcacccctctgacatccggcctgc10/31/0311/07/03119Genomicunknown
ss37044387BROAD|mt4824byFreqfwd/TA/Ggccccctttcacttctgagtcccagangttcccaaggcacccctctgacatccggcctgc04/25/0509/05/14131Genomicunknown
ss66863449ILLUMINA|HumanHap550v1.1_MitoA4825Gfwd/TA/Ggccccctttcacttctgagtcccagaggttcccaaggcacccctctgacatccggcctgc11/14/0611/14/06131Genomicunknown
ss66931988ILLUMINA|HumanHap650Yv1.0_MitoA4825Gfwd/TA/Ggccccctttcacttctgagtcccagaggttcccaaggcacccctctgacatccggcctgc11/14/0611/14/06131Genomicunknown
ss68074757ILLUMINA|HumanHap250Sv1.0_MitoA4825Gfwd/TA/Ggccccctttcacttctgagtcccagaggttcccaaggcacccctctgacatccggcctgc12/06/0612/07/06131Genomicunknown
ss69268945PERLEGEN|PGP04672045byFreqfwd/TA/Ggccccctttcacttctgagtcccagaggttcccaaggcacccctctgacatccggcctgc01/30/0703/31/08131Genomicunknown
ss70458809ILLUMINA|HumanHap550v3.0__MitoA4825Gfwd/TA/Ggccccctttcacttctgagtcccagaggttcccaaggcacccctctgacatccggcctgc04/20/0703/29/08131Genomicunknown
ss70979349ILLUMINA|HumanHap650Yv3.0_MitoA4825Gfwd/TA/Ggccccctttcacttctgagtcccagaggttcccaaggcacccctctgacatccggcctgc04/23/0704/23/07131Genomicunknown
ss75877932ILLUMINA|ILMN_Human_1M_MitoA4825Gfwd/TA/Ggccccctttcacttctgagtcccagaggttcccaaggcacccctctgacatccggcctgc08/28/0708/29/07131Genomicunknown
ss152536650ILLUMINA|Human610_Quadv1_B_MitoA4825G-13273339_T_F_1501342321fwd/TA/Ggccccctttcacttctgagtcccagaggttcccaaggcacccctctgacatccggcctgc06/18/0906/19/09131Genomicunknown
ss159102679ILLUMINA|Human660W-Quad_v1_A_MitoA4825G-13273339_T_F_1501342321fwd/TA/Ggccccctttcacttctgagtcccagaggttcccaaggcacccctctgacatccggcctgc07/06/0907/06/09131Genomicunknown
ss169133891ILLUMINA|Human1M-Duov3_B_MitoA4825G-13273339_T_F_1501342321fwd/TA/Ggccccctttcacttctgagtcccagaggttcccaaggcacccctctgacatccggcctgc10/01/0910/01/09132Genomicunknown
ss275680272GMI|GMI_AK_SNP_433fwd/A/Ggccccctttcacttctgagtcccagaggttcccaaggcacccctctgacatccggcctgc12/16/1012/16/10137Genomicunknown
ss537623970ILLUMINA|HumanOmni5-4v1_B_rs9701779-131_B_R_1893927720fwd/TA/Gctttcacttctgagtcccagaggttcccaaggcacccctctgacatccgg06/22/1208/28/15146Genomicunknown
ss778717296ILLUMINA|HumanOmni25Exome-8v1_A_rs9701779-131_B_R_1867868368fwd/TA/Gctttcacttctgagtcccagaggttcccaaggcacccctctgacatccgg05/30/1307/09/15146Genomicunknown
ss834176613ILLUMINA|HumanOmni2.5-8v1_A_rs9701779-131_B_R_1867868368fwd/TA/Gctttcacttctgagtcccagaggttcccaaggcacccctctgacatccgg09/18/1307/28/15146Genomicunknown
ss2632465436ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs9701779-131_B_R_18939277fwd/A/Gctttcacttctgagtcccagaggttcccaaggcacccctctgacatccgg02/02/1702/02/17151Genomicunknown
ss2697373716GRF|rs9701779fwd/A/Gctttcacttctgagtcccagaggttcccaaggcacccctctgacatccgg02/13/1702/13/17151Genomicunknown
ss2750622665GNOMAD|rs9701779fwd/A/Gctttcacttctgagtcccagaggttcccaaggcacccctctgacatccgg05/17/1705/17/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs9701779|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 TATTTCTAGG ACTATGAGAA TCGAACCCAT CCCTGAGAAT CCAAAATTCT CCGTGCCACC
 TATCACACCC CATCCTAAAG TAAGGTCAGC TAAATAAGCT ATCGGGCCCA TACCCCGAAA
 ATGTTGGTTA TATCCTTCCC GTACTAATTA ATCCCCTGGC CCAACCCGTC ATCTACTCTA
 CCATCTTTGC AGGCACACTC ATCACAGCGC TAAGCTCGCA CTGATTTTTT ACCTGAGTAG
 GCCTAGAAAT AAACATGCTA GCTTTTATTC CAGTTCTAAC CAAAAAAATA AACCCTCGTT
 CCACAGAAGC TGCCATCAAG TATTTCCTCA CGCAAGCAAC CGCATCCATA ATCCTTCTAA
 TAGCTATCCT CTTCAACAAT ATACTCTCCG GACAATGAAC CATAACCAAT ACCACCAATC
 AATACTCATC ATTAATAATC ATAATGGCTA TAGCAATAAA ACTAGGAATA GCCCCCTTTC
 ACTTCTGAGT CCCAGAGGTT
 R
 CCCAAGGCAC CCCTCTGACA TCCGGCCTGC TCCTTCTCAC ATGACAAAAA CTAGCCCCCA
 TCTCAATCAT ATACCAAATT TCTCCCTCAT TAAACGTAAG CCTTCTCCTC ACTCTTTCAA
 TCTTATCCAT CATGGCAGGC AGTTGAGGTG GATTAAACCA AACCCAACTA CGCAAAATCT
 TAGCATACTC CTCAATTACC CACATAGGAT GAATAACAGC AGTTCTACCG TACAACCCTA
 ACATAACCAT TCTTAATTTA ACTATTTATA TTATCCTAAC TACTACCGCA TTCCTACTAC
 TCAACTTAAA CTCCAGCACC ACAACCCTAC TACTATCTCG CACCTGAAAC AAGCTAACAT
 GACTAACACC CTTAATTCCA TCCACCCTCC TCTCCCTAGG AGGCCTGCCC CCGCTAACCG
 GCTTTTTGCC CAAATGGGCC ATTATCGAAG AATTCACAAA AAACAATAGC CTCATCATCC
 CCACCATCAT AGCCATCATC

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_034471
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
G/G
HWPA
G
ss13505191ENSEMBL_Watson 2IG1.00000000 1.00000000
ss37044387HapMap-CEUEuropean 118IG1.00000000 1.00000000
HapMap-HCBAsian 88IG0.863636370.136363640.001000000.863636370.13636364
HapMap-JPTAsian 88IG0.954545440.045454550.001000000.954545440.04545455
HapMap-YRISub-Saharan African 112IG1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0.075+/-0.1790000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqUNKNOWNUNKNOWNUNKNOWN