Name: rs1041938
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs1041938

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr2:134453973 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: A>T
Variation Type: SNV Single Nucleotide Variation
Frequency: T=0.246579 (65267/264690, TOPMED)
T=0.222402 (31155/140084, GnomAD)
T=0.38233 (10803/28256, 14KJPN) (+ 17 more)
T=0.15124 (2857/18890, ALFA)
T=0.38502 (6453/16760, 8.3KJPN)
T=0.3276 (2098/6404, 1000G_30x)
T=0.3241 (1623/5008, 1000G)
T=0.0607 (272/4480, Estonian)
T=0.0589 (227/3854, ALSPAC)
T=0.0512 (190/3708, TWINSUK)
T=0.4392 (1287/2930, KOREAN)
T=0.4547 (833/1832, Korea1K)
T=0.053 (53/998, GoNL)
T=0.045 (27/600, NorthernSweden)
T=0.326 (107/328, HapMap)
A=0.358 (111/310, SGDP_PRJ)
T=0.440 (95/216, Qatari)
A=0.440 (95/216, Vietnamese)
T=0.05 (2/40, GENOME_DK)
A=0.40 (8/20, Siberian)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: MGAT5 : 3 Prime UTR Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541

Population	Group	Sample Size	Ref Allele	Alt Allele
Total	Global	18890	A=0.84876	T=0.15124
European	Sub	14286	A=0.93469	T=0.06531
African	Sub	2946	A=0.4725	T=0.5275
African Others	Sub	114	A=0.351	T=0.649
African American	Sub	2832	A=0.4774	T=0.5226
Asian	Sub	112	A=0.554	T=0.446
East Asian	Sub	86	A=0.50	T=0.50
Other Asian	Sub	26	A=0.73	T=0.27
Latin American 1	Sub	146	A=0.719	T=0.281
Latin American 2	Sub	610	A=0.838	T=0.162
South Asian	Sub	98	A=0.83	T=0.17
Other	Sub	692	A=0.764	T=0.236

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download

Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	A=0.753421	T=0.246579
gnomAD - Genomes	Global	Study-wide	140084	A=0.777598	T=0.222402
gnomAD - Genomes	European	Sub	75916	A=0.93640	T=0.06360
gnomAD - Genomes	African	Sub	41916	A=0.48743	T=0.51257
gnomAD - Genomes	American	Sub	13656	A=0.84344	T=0.15656
gnomAD - Genomes	Ashkenazi Jewish	Sub	3322	A=0.7920	T=0.2080
gnomAD - Genomes	East Asian	Sub	3124	A=0.5115	T=0.4885
gnomAD - Genomes	Other	Sub	2150	A=0.7735	T=0.2265
14KJPN	JAPANESE	Study-wide	28256	A=0.61767	T=0.38233
Allele Frequency Aggregator	Total	Global	18890	A=0.84876	T=0.15124
Allele Frequency Aggregator	European	Sub	14286	A=0.93469	T=0.06531
Allele Frequency Aggregator	African	Sub	2946	A=0.4725	T=0.5275
Allele Frequency Aggregator	Other	Sub	692	A=0.764	T=0.236
Allele Frequency Aggregator	Latin American 2	Sub	610	A=0.838	T=0.162
Allele Frequency Aggregator	Latin American 1	Sub	146	A=0.719	T=0.281
Allele Frequency Aggregator	Asian	Sub	112	A=0.554	T=0.446
Allele Frequency Aggregator	South Asian	Sub	98	A=0.83	T=0.17
8.3KJPN	JAPANESE	Study-wide	16760	A=0.61498	T=0.38502
1000Genomes_30x	Global	Study-wide	6404	A=0.6724	T=0.3276
1000Genomes_30x	African	Sub	1786	A=0.4099	T=0.5901
1000Genomes_30x	Europe	Sub	1266	A=0.9186	T=0.0814
1000Genomes_30x	South Asian	Sub	1202	A=0.8270	T=0.1730
1000Genomes_30x	East Asian	Sub	1170	A=0.5034	T=0.4966
1000Genomes_30x	American	Sub	980	A=0.845	T=0.155
1000Genomes	Global	Study-wide	5008	A=0.6759	T=0.3241
1000Genomes	African	Sub	1322	A=0.4138	T=0.5862
1000Genomes	East Asian	Sub	1008	A=0.5149	T=0.4851
1000Genomes	Europe	Sub	1006	A=0.9145	T=0.0855
1000Genomes	South Asian	Sub	978	A=0.829	T=0.171
1000Genomes	American	Sub	694	A=0.847	T=0.153
Genetic variation in the Estonian population	Estonian	Study-wide	4480	A=0.9393	T=0.0607
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.9411	T=0.0589
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.9488	T=0.0512
KOREAN population from KRGDB	KOREAN	Study-wide	2930	A=0.5608	T=0.4392
Korean Genome Project	KOREAN	Study-wide	1832	A=0.5453	T=0.4547
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	A=0.947	T=0.053
Northern Sweden	ACPOP	Study-wide	600	A=0.955	T=0.045
HapMap	Global	Study-wide	328	A=0.674	T=0.326
HapMap	African	Sub	120	A=0.408	T=0.592
HapMap	American	Sub	120	A=0.967	T=0.033
HapMap	Asian	Sub	88	A=0.64	T=0.36
SGDP_PRJ	Global	Study-wide	310	A=0.358	T=0.642
Qatari	Global	Study-wide	216	A=0.560	T=0.440
A Vietnamese Genetic Variation Database	Global	Study-wide	216	A=0.440	T=0.560
The Danish reference pan genome	Danish	Study-wide	40	A=0.95	T=0.05
Siberian	Global	Study-wide	20	A=0.40	T=0.60

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 2	NC_000002.12:g.134453973A>T
GRCh37.p13 chr 2	NC_000002.11:g.135211544A>T
MGAT5 RefSeqGene	NG_030324.1:g.204715A>T

Gene: MGAT5, alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
MGAT5 transcript variant 2	NM_002410.5:c.*5126=	N/A	3 Prime UTR Variant
MGAT5 transcript variant 1	NM_001371457.1:c.*5126=	N/A	3 Prime UTR Variant
MGAT5 transcript variant X1	XM_017004147.3:c.*5126=	N/A	3 Prime UTR Variant
MGAT5 transcript variant X2	XM_047444394.1:c.*5126=	N/A	3 Prime UTR Variant
MGAT5 transcript variant X3	XM_047444395.1:c.*5126=	N/A	3 Prime UTR Variant
MGAT5 transcript variant X4	XM_047444396.1:c.*5126=	N/A	3 Prime UTR Variant
MGAT5 transcript variant X5	XM_005263669.6:c.*5126=	N/A	3 Prime UTR Variant
MGAT5 transcript variant X6	XM_047444397.1:c.*5126=	N/A	3 Prime UTR Variant
MGAT5 transcript variant X7	XM_047444398.1:c.*5126=	N/A	3 Prime UTR Variant
MGAT5 transcript variant X8	XM_047444399.1:c.*5126=	N/A	3 Prime UTR Variant
MGAT5 transcript variant X9	XM_047444400.1:c.*5126=	N/A	3 Prime UTR Variant
MGAT5 transcript variant X10	XM_006712534.4:c.*5126=	N/A	3 Prime UTR Variant
MGAT5 transcript variant X11	XM_047444401.1:c.*5126=	N/A	3 Prime UTR Variant
MGAT5 transcript variant X12	XM_011511199.3:c.*5126=	N/A	3 Prime UTR Variant
MGAT5 transcript variant X13	XM_047444402.1:c.*5126=	N/A	3 Prime UTR Variant
MGAT5 transcript variant X14	XM_047444403.1:c.*5126=	N/A	3 Prime UTR Variant
MGAT5 transcript variant X15	XM_011511201.3:c.*5126=	N/A	3 Prime UTR Variant
MGAT5 transcript variant X16	XM_047444404.1:c.*5126=	N/A	3 Prime UTR Variant
MGAT5 transcript variant X17	XM_017004148.2:c.*5126=	N/A	3 Prime UTR Variant
MGAT5 transcript variant X18	XM_047444405.1:c.*5126=	N/A	3 Prime UTR Variant
MGAT5 transcript variant X19	XM_011511202.3:c.*5126=	N/A	3 Prime UTR Variant
MGAT5 transcript variant X21	XM_017004149.2:c.	N/A	Genic Downstream Transcript Variant
MGAT5 transcript variant X20	XM_047444406.1:c.	N/A	Genic Downstream Transcript Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	A=	T
GRCh38.p14 chr 2	NC_000002.12:g.134453973=	NC_000002.12:g.134453973A>T
GRCh37.p13 chr 2	NC_000002.11:g.135211544=	NC_000002.11:g.135211544A>T
MGAT5 RefSeqGene	NG_030324.1:g.204715=	NG_030324.1:g.204715A>T
MGAT5 transcript variant 2	NM_002410.5:c.*5126=	NM_002410.5:c.*5126A>T
MGAT5 transcript	NM_002410.4:c.*5126=	NM_002410.4:c.*5126A>T
MGAT5 transcript variant 1	NM_001371457.1:c.*5126=	NM_001371457.1:c.*5126A>T
MGAT5 transcript variant X5	XM_005263669.6:c.*5126=	XM_005263669.6:c.*5126A>T
MGAT5 transcript variant X8	XM_005263669.5:c.*5126=	XM_005263669.5:c.*5126A>T
MGAT5 transcript variant X8	XM_005263669.4:c.*5126=	XM_005263669.4:c.*5126A>T
MGAT5 transcript variant X7	XM_005263669.3:c.*5126=	XM_005263669.3:c.*5126A>T
MGAT5 transcript variant X6	XM_005263669.2:c.*5126=	XM_005263669.2:c.*5126A>T
MGAT5 transcript variant X6	XM_005263669.1:c.*5126=	XM_005263669.1:c.*5126A>T
MGAT5 transcript variant X10	XM_006712534.4:c.*5126=	XM_006712534.4:c.*5126A>T
MGAT5 transcript variant X3	XM_006712534.3:c.*5126=	XM_006712534.3:c.*5126A>T
MGAT5 transcript variant X2	XM_006712534.2:c.*5126=	XM_006712534.2:c.*5126A>T
MGAT5 transcript variant X8	XM_006712534.1:c.*5126=	XM_006712534.1:c.*5126A>T
MGAT5 transcript variant X12	XM_011511199.3:c.*5126=	XM_011511199.3:c.*5126A>T
MGAT5 transcript variant X1	XM_011511199.2:c.*5126=	XM_011511199.2:c.*5126A>T
MGAT5 transcript variant X1	XM_011511199.1:c.*5126=	XM_011511199.1:c.*5126A>T
MGAT5 transcript variant X1	XM_017004147.3:c.*5126=	XM_017004147.3:c.*5126A>T
MGAT5 transcript variant X2	XM_017004147.2:c.*5126=	XM_017004147.2:c.*5126A>T
MGAT5 transcript variant X2	XM_017004147.1:c.*5126=	XM_017004147.1:c.*5126A>T
MGAT5 transcript variant X15	XM_011511201.3:c.*5126=	XM_011511201.3:c.*5126A>T
MGAT5 transcript variant X5	XM_011511201.2:c.*5126=	XM_011511201.2:c.*5126A>T
MGAT5 transcript variant X6	XM_011511201.1:c.*5126=	XM_011511201.1:c.*5126A>T
MGAT5 transcript variant X19	XM_011511202.3:c.*5126=	XM_011511202.3:c.*5126A>T
MGAT5 transcript variant X9	XM_011511202.2:c.*5126=	XM_011511202.2:c.*5126A>T
MGAT5 transcript variant X9	XM_011511202.1:c.*5126=	XM_011511202.1:c.*5126A>T
MGAT5 transcript variant X17	XM_017004148.2:c.*5126=	XM_017004148.2:c.*5126A>T
MGAT5 transcript variant X10	XM_017004148.1:c.*5126=	XM_017004148.1:c.*5126A>T
MGAT5 transcript variant X13	XM_047444402.1:c.*5126=	XM_047444402.1:c.*5126A>T
MGAT5 transcript variant X16	XM_047444404.1:c.*5126=	XM_047444404.1:c.*5126A>T
MGAT5 transcript variant X3	XM_047444395.1:c.*5126=	XM_047444395.1:c.*5126A>T
MGAT5 transcript variant X11	XM_047444401.1:c.*5126=	XM_047444401.1:c.*5126A>T
MGAT5 transcript variant X8	XM_047444399.1:c.*5126=	XM_047444399.1:c.*5126A>T
MGAT5 transcript variant X4	XM_047444396.1:c.*5126=	XM_047444396.1:c.*5126A>T
MGAT5 transcript variant X2	XM_047444394.1:c.*5126=	XM_047444394.1:c.*5126A>T
MGAT5 transcript variant X6	XM_047444397.1:c.*5126=	XM_047444397.1:c.*5126A>T
MGAT5 transcript variant X9	XM_047444400.1:c.*5126=	XM_047444400.1:c.*5126A>T
MGAT5 transcript variant X14	XM_047444403.1:c.*5126=	XM_047444403.1:c.*5126A>T
MGAT5 transcript variant X18	XM_047444405.1:c.*5126=	XM_047444405.1:c.*5126A>T
MGAT5 transcript variant X7	XM_047444398.1:c.*5126=	XM_047444398.1:c.*5126A>T
LOC151162 transcript	NR_024275.1:n.4585=	NR_024275.1:n.4585A>T

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

68 SubSNP, 20 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	LEE	ss1508759	Oct 05, 2000 (86)
2	WI_SSAHASNP	ss11440276	Jul 11, 2003 (116)
3	CGAP-GAI	ss16244305	Feb 27, 2004 (120)
4	SEQUENOM	ss24812461	Sep 20, 2004 (123)
5	HGSV	ss86142065	Dec 16, 2007 (130)
6	BGI	ss103590562	Dec 01, 2009 (131)
7	ILLUMINA-UK	ss117885345	Feb 14, 2009 (130)
8	BUSHMAN	ss201088175	Jul 04, 2010 (132)
9	BCM-HGSC-SUB	ss205882205	Jul 04, 2010 (132)
10	1000GENOMES	ss211003539	Jul 14, 2010 (132)
11	1000GENOMES	ss219524261	Jul 14, 2010 (132)
12	1000GENOMES	ss231371587	Jul 14, 2010 (132)
13	1000GENOMES	ss238877986	Jul 15, 2010 (132)
14	GMI	ss276690523	May 04, 2012 (137)
15	PJP	ss292372922	May 09, 2011 (134)
16	TISHKOFF	ss555891862	Apr 25, 2013 (138)
17	SSMP	ss649519127	Apr 25, 2013 (138)
18	EVA-GONL	ss977383371	Aug 21, 2014 (142)
19	JMKIDD_LAB	ss1069514224	Aug 21, 2014 (142)
20	1000GENOMES	ss1299424934	Aug 21, 2014 (142)
21	DDI	ss1428748186	Apr 01, 2015 (144)
22	EVA_GENOME_DK	ss1579096675	Apr 01, 2015 (144)
23	EVA_DECODE	ss1586811660	Apr 01, 2015 (144)
24	EVA_UK10K_ALSPAC	ss1604615581	Apr 01, 2015 (144)
25	EVA_UK10K_TWINSUK	ss1647609614	Apr 01, 2015 (144)
26	HAMMER_LAB	ss1797569073	Sep 08, 2015 (146)
27	WEILL_CORNELL_DGM	ss1920641611	Feb 12, 2016 (147)
28	GENOMED	ss1968894482	Jul 19, 2016 (147)
29	JJLAB	ss2020844879	Sep 14, 2016 (149)
30	USC_VALOUEV	ss2148910522	Dec 20, 2016 (150)
31	HUMAN_LONGEVITY	ss2234473445	Dec 20, 2016 (150)
32	SYSTEMSBIOZJU	ss2624928958	Nov 08, 2017 (151)
33	GRF	ss2703534710	Nov 08, 2017 (151)
34	GNOMAD	ss2779937311	Nov 08, 2017 (151)
35	AFFY	ss2985806967	Nov 08, 2017 (151)
36	SWEGEN	ss2990468793	Nov 08, 2017 (151)
37	BIOINF_KMB_FNS_UNIBA	ss3024185804	Nov 08, 2017 (151)
38	CSHL	ss3344492964	Nov 08, 2017 (151)
39	OMUKHERJEE_ADBS	ss3646272780	Oct 11, 2018 (152)
40	EGCUT_WGS	ss3658310216	Jul 13, 2019 (153)
41	EVA_DECODE	ss3704939641	Jul 13, 2019 (153)
42	ACPOP	ss3728888650	Jul 13, 2019 (153)
43	EVA	ss3757411191	Jul 13, 2019 (153)
44	PACBIO	ss3784000902	Jul 13, 2019 (153)
45	PACBIO	ss3789563592	Jul 13, 2019 (153)
46	PACBIO	ss3794436535	Jul 13, 2019 (153)
47	KHV_HUMAN_GENOMES	ss3801779066	Jul 13, 2019 (153)
48	EVA	ss3825609371	Apr 25, 2020 (154)
49	EVA	ss3827233247	Apr 25, 2020 (154)
50	SGDP_PRJ	ss3853465853	Apr 25, 2020 (154)
51	KRGDB	ss3899024811	Apr 25, 2020 (154)
52	KOGIC	ss3949016236	Apr 25, 2020 (154)
53	FSA-LAB	ss3984189358	Apr 26, 2021 (155)
54	FSA-LAB	ss3984189359	Apr 26, 2021 (155)
55	EVA	ss3986019629	Apr 26, 2021 (155)
56	TOPMED	ss4524766776	Apr 26, 2021 (155)
57	TOMMO_GENOMICS	ss5153975573	Apr 26, 2021 (155)
58	1000G_HIGH_COVERAGE	ss5250100164	Oct 12, 2022 (156)
59	EVA	ss5332495453	Oct 12, 2022 (156)
60	HUGCELL_USP	ss5449904549	Oct 12, 2022 (156)
61	1000G_HIGH_COVERAGE	ss5526412877	Oct 12, 2022 (156)
62	SANFORD_IMAGENETICS	ss5629857316	Oct 12, 2022 (156)
63	TOMMO_GENOMICS	ss5684133776	Oct 12, 2022 (156)
64	YY_MCH	ss5802744903	Oct 12, 2022 (156)
65	EVA	ss5820839202	Oct 12, 2022 (156)
66	EVA	ss5852724146	Oct 12, 2022 (156)
67	EVA	ss5932468413	Oct 12, 2022 (156)
68	EVA	ss5956059317	Oct 12, 2022 (156)
69	1000Genomes	NC_000002.11 - 135211544	Oct 11, 2018 (152)
70	1000Genomes_30x	NC_000002.12 - 134453973	Oct 12, 2022 (156)
71	The Avon Longitudinal Study of Parents and Children	NC_000002.11 - 135211544	Oct 11, 2018 (152)
72	Genetic variation in the Estonian population	NC_000002.11 - 135211544	Oct 11, 2018 (152)
73	The Danish reference pan genome	NC_000002.11 - 135211544	Apr 25, 2020 (154)
74	gnomAD - Genomes	NC_000002.12 - 134453973	Apr 26, 2021 (155)
75	Genome of the Netherlands Release 5	NC_000002.11 - 135211544	Apr 25, 2020 (154)
76	HapMap	NC_000002.12 - 134453973	Apr 25, 2020 (154)
77	KOREAN population from KRGDB	NC_000002.11 - 135211544	Apr 25, 2020 (154)
78	Korean Genome Project	NC_000002.12 - 134453973	Apr 25, 2020 (154)
79	Northern Sweden	NC_000002.11 - 135211544	Jul 13, 2019 (153)
80	Qatari	NC_000002.11 - 135211544	Apr 25, 2020 (154)
81	SGDP_PRJ	NC_000002.11 - 135211544	Apr 25, 2020 (154)
82	Siberian	NC_000002.11 - 135211544	Apr 25, 2020 (154)
83	8.3KJPN	NC_000002.11 - 135211544	Apr 26, 2021 (155)
84	14KJPN	NC_000002.12 - 134453973	Oct 12, 2022 (156)
85	TopMed	NC_000002.12 - 134453973	Apr 26, 2021 (155)
86	UK 10K study - Twins	NC_000002.11 - 135211544	Oct 11, 2018 (152)
87	A Vietnamese Genetic Variation Database	NC_000002.11 - 135211544	Jul 13, 2019 (153)
88	ALFA	NC_000002.12 - 134453973	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs61440406	May 26, 2008 (130)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss86142065	NC_000002.9:135045275:A:T	NC_000002.12:134453972:A:T	(self)
ss117885345, ss201088175, ss205882205, ss211003539, ss276690523, ss292372922, ss1586811660	NC_000002.10:134928013:A:T	NC_000002.12:134453972:A:T	(self)
10444218, 5752728, 4048464, 5261614, 2529447, 6202205, 2173515, 2683541, 5482833, 1426876, 11944880, 5752728, 1244805, ss219524261, ss231371587, ss238877986, ss555891862, ss649519127, ss977383371, ss1069514224, ss1299424934, ss1428748186, ss1579096675, ss1604615581, ss1647609614, ss1797569073, ss1920641611, ss1968894482, ss2020844879, ss2148910522, ss2624928958, ss2703534710, ss2779937311, ss2985806967, ss2990468793, ss3344492964, ss3646272780, ss3658310216, ss3728888650, ss3757411191, ss3784000902, ss3789563592, ss3794436535, ss3825609371, ss3827233247, ss3853465853, ss3899024811, ss3984189358, ss3984189359, ss3986019629, ss5153975573, ss5332495453, ss5629857316, ss5820839202, ss5956059317	NC_000002.11:135211543:A:T	NC_000002.12:134453972:A:T	(self)
13938812, 74460294, 1898435, 5394237, 17970880, 328589655, 8533497308, ss2234473445, ss3024185804, ss3704939641, ss3801779066, ss3949016236, ss4524766776, ss5250100164, ss5449904549, ss5526412877, ss5684133776, ss5802744903, ss5852724146, ss5932468413	NC_000002.12:134453972:A:T	NC_000002.12:134453972:A:T	(self)
ss11440276	NT_005058.13:3820442:A:T	NC_000002.12:134453972:A:T	(self)
ss1508759, ss16244305, ss24812461, ss103590562	NT_022135.16:24960206:A:T	NC_000002.12:134453972:A:T	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs1041938

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs1041938