Name: rs13096302
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs13096302

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr3:2285880 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: C>G / C>T
Variation Type: SNV Single Nucleotide Variation
Frequency: G=0.480509 (127186/264690, TOPMED)
G=0.485899 (67952/139848, GnomAD)
C=0.45704 (12915/28258, 14KJPN) (+ 18 more)
C=0.49064 (8858/18054, ALFA)
C=0.45662 (7653/16760, 8.3KJPN)
G=0.4939 (3163/6404, 1000G_30x)
C=0.4974 (2491/5008, 1000G)
C=0.4335 (1942/4480, Estonian)
C=0.4593 (1770/3854, ALSPAC)
C=0.4792 (1777/3708, TWINSUK)
C=0.4724 (1384/2930, KOREAN)
C=0.5000 (916/1832, Korea1K)
G=0.5000 (916/1832, Korea1K)
C=0.460 (459/998, GoNL)
G=0.428 (257/600, NorthernSweden)
C=0.282 (119/422, SGDP_PRJ)
G=0.489 (136/278, HapMap)
G=0.472 (102/216, Qatari)
C=0.491 (104/212, Vietnamese)
C=0.33 (15/46, Siberian)
C=0.40 (16/40, GENOME_DK)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: CNTN4 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541

Population	Group	Sample Size	Ref Allele	Alt Allele
Total	Global	18054	C=0.49064	G=0.50936, T=0.00000
European	Sub	13758	C=0.45915	G=0.54085, T=0.00000
African	Sub	2642	C=0.6923	G=0.3077, T=0.0000
African Others	Sub	96	C=0.74	G=0.26, T=0.00
African American	Sub	2546	C=0.6905	G=0.3095, T=0.0000
Asian	Sub	112	C=0.473	G=0.527, T=0.000
East Asian	Sub	86	C=0.50	G=0.50, T=0.00
Other Asian	Sub	26	C=0.38	G=0.62, T=0.00
Latin American 1	Sub	146	C=0.527	G=0.473, T=0.000
Latin American 2	Sub	610	C=0.348	G=0.652, T=0.000
South Asian	Sub	98	C=0.35	G=0.65, T=0.00
Other	Sub	688	C=0.488	G=0.512, T=0.000

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	C=0.519491	G=0.480509
gnomAD - Genomes	Global	Study-wide	139848	C=0.514101	G=0.485899
gnomAD - Genomes	European	Sub	75750	C=0.45831	G=0.54169
gnomAD - Genomes	African	Sub	41914	C=0.64468	G=0.35532
gnomAD - Genomes	American	Sub	13596	C=0.44013	G=0.55987
gnomAD - Genomes	Ashkenazi Jewish	Sub	3324	C=0.4844	G=0.5156
gnomAD - Genomes	East Asian	Sub	3126	C=0.4795	G=0.5205
gnomAD - Genomes	Other	Sub	2138	C=0.4981	G=0.5019
14KJPN	JAPANESE	Study-wide	28258	C=0.45704	G=0.54296
Allele Frequency Aggregator	Total	Global	18054	C=0.49064	G=0.50936, T=0.00000
Allele Frequency Aggregator	European	Sub	13758	C=0.45915	G=0.54085, T=0.00000
Allele Frequency Aggregator	African	Sub	2642	C=0.6923	G=0.3077, T=0.0000
Allele Frequency Aggregator	Other	Sub	688	C=0.488	G=0.512, T=0.000
Allele Frequency Aggregator	Latin American 2	Sub	610	C=0.348	G=0.652, T=0.000
Allele Frequency Aggregator	Latin American 1	Sub	146	C=0.527	G=0.473, T=0.000
Allele Frequency Aggregator	Asian	Sub	112	C=0.473	G=0.527, T=0.000
Allele Frequency Aggregator	South Asian	Sub	98	C=0.35	G=0.65, T=0.00
8.3KJPN	JAPANESE	Study-wide	16760	C=0.45662	G=0.54338
1000Genomes_30x	Global	Study-wide	6404	C=0.5061	G=0.4939
1000Genomes_30x	African	Sub	1786	C=0.7021	G=0.2979
1000Genomes_30x	Europe	Sub	1266	C=0.4889	G=0.5111
1000Genomes_30x	South Asian	Sub	1202	C=0.3619	G=0.6381
1000Genomes_30x	East Asian	Sub	1170	C=0.4624	G=0.5376
1000Genomes_30x	American	Sub	980	C=0.400	G=0.600
1000Genomes	Global	Study-wide	5008	C=0.4974	G=0.5026
1000Genomes	African	Sub	1322	C=0.6989	G=0.3011
1000Genomes	East Asian	Sub	1008	C=0.4603	G=0.5397
1000Genomes	Europe	Sub	1006	C=0.4801	G=0.5199
1000Genomes	South Asian	Sub	978	C=0.349	G=0.651
1000Genomes	American	Sub	694	C=0.402	G=0.598
Genetic variation in the Estonian population	Estonian	Study-wide	4480	C=0.4335	G=0.5665
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.4593	G=0.5407
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.4792	G=0.5208
KOREAN population from KRGDB	KOREAN	Study-wide	2930	C=0.4724	G=0.5276
Korean Genome Project	KOREAN	Study-wide	1832	C=0.5000	G=0.5000
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	C=0.460	G=0.540
Northern Sweden	ACPOP	Study-wide	600	C=0.572	G=0.428
SGDP_PRJ	Global	Study-wide	422	C=0.282	G=0.718
HapMap	Global	Study-wide	278	C=0.511	G=0.489
HapMap	African	Sub	98	C=0.60	G=0.40
HapMap	American	Sub	98	C=0.47	G=0.53
HapMap	Asian	Sub	82	C=0.45	G=0.55
Qatari	Global	Study-wide	216	C=0.528	G=0.472
A Vietnamese Genetic Variation Database	Global	Study-wide	212	C=0.491	G=0.509
Siberian	Global	Study-wide	46	C=0.33	G=0.67
The Danish reference pan genome	Danish	Study-wide	40	C=0.40	G=0.60

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 3	NC_000003.12:g.2285880C>G
GRCh38.p14 chr 3	NC_000003.12:g.2285880C>T
GRCh37.p13 chr 3	NC_000003.11:g.2327564C>G
GRCh37.p13 chr 3	NC_000003.11:g.2327564C>T
CNTN4 RefSeqGene	NG_012827.2:g.190318C>G
CNTN4 RefSeqGene	NG_012827.2:g.190318C>T

Gene: CNTN4, contactin 4 (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
CNTN4 transcript variant 4	NM_001206955.2:c.-145+468… NM_001206955.2:c.-145+46812C>G	N/A	Intron Variant
CNTN4 transcript variant 6	NM_001350095.2:c.-144-532… NM_001350095.2:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant 1	NM_175607.3:c.-144-53298C… NM_175607.3:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant 5	NM_001206956.2:c.	N/A	Genic Upstream Transcript Variant
CNTN4 transcript variant 3	NM_175613.3:c.	N/A	Genic Upstream Transcript Variant
CNTN4 transcript variant X33	XM_006713004.5:c.-144-532… XM_006713004.5:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X1	XM_011533425.4:c.-144-532… XM_011533425.4:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X4	XM_011533427.3:c.-144-532… XM_011533427.3:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X2	XM_017005782.2:c.-144-532… XM_017005782.2:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X3	XM_017005783.2:c.-144-532… XM_017005783.2:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X8	XM_017005784.3:c.-144-532… XM_017005784.3:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X29	XM_017005785.2:c.-144-532… XM_017005785.2:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X9	XM_047447517.1:c.-144-532… XM_047447517.1:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X10	XM_047447518.1:c.-144-532… XM_047447518.1:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X11	XM_047447519.1:c.-144-532… XM_047447519.1:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X12	XM_047447520.1:c.-144-532… XM_047447520.1:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X13	XM_047447521.1:c.-144-532… XM_047447521.1:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X14	XM_047447522.1:c.-144-532… XM_047447522.1:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X15	XM_047447523.1:c.-144-532… XM_047447523.1:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X16	XM_047447524.1:c.-144-532… XM_047447524.1:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X17	XM_047447525.1:c.-144-532… XM_047447525.1:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X18	XM_047447526.1:c.-144-532… XM_047447526.1:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X19	XM_047447527.1:c.-144-532… XM_047447527.1:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X20	XM_047447528.1:c.-144-532… XM_047447528.1:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X21	XM_047447529.1:c.-144-532… XM_047447529.1:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X22	XM_047447530.1:c.-144-532… XM_047447530.1:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X23	XM_047447531.1:c.-144-532… XM_047447531.1:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X24	XM_047447532.1:c.-144-532… XM_047447532.1:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X25	XM_047447533.1:c.-144-532… XM_047447533.1:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X28	XM_047447535.1:c.-144-532… XM_047447535.1:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X30	XM_047447536.1:c.-144-532… XM_047447536.1:c.-144-53298C>G	N/A	Intron Variant
CNTN4 transcript variant X5	XM_011533428.3:c.	N/A	Genic Upstream Transcript Variant
CNTN4 transcript variant X27	XM_011533429.3:c.	N/A	Genic Upstream Transcript Variant
CNTN4 transcript variant X6	XM_011533430.3:c.	N/A	Genic Upstream Transcript Variant
CNTN4 transcript variant X34	XM_011533431.3:c.	N/A	Genic Upstream Transcript Variant
CNTN4 transcript variant X31	XM_017005786.2:c.	N/A	Genic Upstream Transcript Variant
CNTN4 transcript variant X32	XM_017005787.2:c.	N/A	Genic Upstream Transcript Variant
CNTN4 transcript variant X7	XM_047447516.1:c.	N/A	Genic Upstream Transcript Variant
CNTN4 transcript variant X26	XM_047447534.1:c.	N/A	Genic Upstream Transcript Variant
CNTN4 transcript variant X35	XM_047447537.1:c.	N/A	Genic Upstream Transcript Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	C=	G	T
GRCh38.p14 chr 3	NC_000003.12:g.2285880=	NC_000003.12:g.2285880C>G	NC_000003.12:g.2285880C>T
GRCh37.p13 chr 3	NC_000003.11:g.2327564=	NC_000003.11:g.2327564C>G	NC_000003.11:g.2327564C>T
CNTN4 RefSeqGene	NG_012827.2:g.190318=	NG_012827.2:g.190318C>G	NG_012827.2:g.190318C>T
CNTN4 transcript variant 4	NM_001206955.1:c.-145+46812=	NM_001206955.1:c.-145+46812C>G	NM_001206955.1:c.-145+46812C>T
CNTN4 transcript variant 4	NM_001206955.2:c.-145+46812=	NM_001206955.2:c.-145+46812C>G	NM_001206955.2:c.-145+46812C>T
CNTN4 transcript variant 6	NM_001350095.2:c.-144-53298=	NM_001350095.2:c.-144-53298C>G	NM_001350095.2:c.-144-53298C>T
CNTN4 transcript variant 1	NM_175607.2:c.-144-53298=	NM_175607.2:c.-144-53298C>G	NM_175607.2:c.-144-53298C>T
CNTN4 transcript variant 1	NM_175607.3:c.-144-53298=	NM_175607.3:c.-144-53298C>G	NM_175607.3:c.-144-53298C>T
CNTN4 transcript variant X1	XM_005264903.1:c.-144-53298=	XM_005264903.1:c.-144-53298C>G	XM_005264903.1:c.-144-53298C>T
CNTN4 transcript variant X2	XM_005264904.1:c.-144-53298=	XM_005264904.1:c.-144-53298C>G	XM_005264904.1:c.-144-53298C>T
CNTN4 transcript variant X4	XM_005264906.1:c.-144-53298=	XM_005264906.1:c.-144-53298C>G	XM_005264906.1:c.-144-53298C>T
CNTN4 transcript variant X33	XM_006713004.5:c.-144-53298=	XM_006713004.5:c.-144-53298C>G	XM_006713004.5:c.-144-53298C>T
CNTN4 transcript variant X1	XM_011533425.4:c.-144-53298=	XM_011533425.4:c.-144-53298C>G	XM_011533425.4:c.-144-53298C>T
CNTN4 transcript variant X4	XM_011533427.3:c.-144-53298=	XM_011533427.3:c.-144-53298C>G	XM_011533427.3:c.-144-53298C>T
CNTN4 transcript variant X2	XM_017005782.2:c.-144-53298=	XM_017005782.2:c.-144-53298C>G	XM_017005782.2:c.-144-53298C>T
CNTN4 transcript variant X3	XM_017005783.2:c.-144-53298=	XM_017005783.2:c.-144-53298C>G	XM_017005783.2:c.-144-53298C>T
CNTN4 transcript variant X8	XM_017005784.3:c.-144-53298=	XM_017005784.3:c.-144-53298C>G	XM_017005784.3:c.-144-53298C>T
CNTN4 transcript variant X29	XM_017005785.2:c.-144-53298=	XM_017005785.2:c.-144-53298C>G	XM_017005785.2:c.-144-53298C>T
CNTN4 transcript variant X9	XM_047447517.1:c.-144-53298=	XM_047447517.1:c.-144-53298C>G	XM_047447517.1:c.-144-53298C>T
CNTN4 transcript variant X10	XM_047447518.1:c.-144-53298=	XM_047447518.1:c.-144-53298C>G	XM_047447518.1:c.-144-53298C>T
CNTN4 transcript variant X11	XM_047447519.1:c.-144-53298=	XM_047447519.1:c.-144-53298C>G	XM_047447519.1:c.-144-53298C>T
CNTN4 transcript variant X12	XM_047447520.1:c.-144-53298=	XM_047447520.1:c.-144-53298C>G	XM_047447520.1:c.-144-53298C>T
CNTN4 transcript variant X13	XM_047447521.1:c.-144-53298=	XM_047447521.1:c.-144-53298C>G	XM_047447521.1:c.-144-53298C>T
CNTN4 transcript variant X14	XM_047447522.1:c.-144-53298=	XM_047447522.1:c.-144-53298C>G	XM_047447522.1:c.-144-53298C>T
CNTN4 transcript variant X15	XM_047447523.1:c.-144-53298=	XM_047447523.1:c.-144-53298C>G	XM_047447523.1:c.-144-53298C>T
CNTN4 transcript variant X16	XM_047447524.1:c.-144-53298=	XM_047447524.1:c.-144-53298C>G	XM_047447524.1:c.-144-53298C>T
CNTN4 transcript variant X17	XM_047447525.1:c.-144-53298=	XM_047447525.1:c.-144-53298C>G	XM_047447525.1:c.-144-53298C>T
CNTN4 transcript variant X18	XM_047447526.1:c.-144-53298=	XM_047447526.1:c.-144-53298C>G	XM_047447526.1:c.-144-53298C>T
CNTN4 transcript variant X19	XM_047447527.1:c.-144-53298=	XM_047447527.1:c.-144-53298C>G	XM_047447527.1:c.-144-53298C>T
CNTN4 transcript variant X20	XM_047447528.1:c.-144-53298=	XM_047447528.1:c.-144-53298C>G	XM_047447528.1:c.-144-53298C>T
CNTN4 transcript variant X21	XM_047447529.1:c.-144-53298=	XM_047447529.1:c.-144-53298C>G	XM_047447529.1:c.-144-53298C>T
CNTN4 transcript variant X22	XM_047447530.1:c.-144-53298=	XM_047447530.1:c.-144-53298C>G	XM_047447530.1:c.-144-53298C>T
CNTN4 transcript variant X23	XM_047447531.1:c.-144-53298=	XM_047447531.1:c.-144-53298C>G	XM_047447531.1:c.-144-53298C>T
CNTN4 transcript variant X24	XM_047447532.1:c.-144-53298=	XM_047447532.1:c.-144-53298C>G	XM_047447532.1:c.-144-53298C>T
CNTN4 transcript variant X25	XM_047447533.1:c.-144-53298=	XM_047447533.1:c.-144-53298C>G	XM_047447533.1:c.-144-53298C>T
CNTN4 transcript variant X28	XM_047447535.1:c.-144-53298=	XM_047447535.1:c.-144-53298C>G	XM_047447535.1:c.-144-53298C>T
CNTN4 transcript variant X30	XM_047447536.1:c.-144-53298=	XM_047447536.1:c.-144-53298C>G	XM_047447536.1:c.-144-53298C>T

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

71 SubSNP, 20 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	SSAHASNP	ss22016416	Apr 05, 2004 (121)
2	ABI	ss41997832	Mar 13, 2006 (126)
3	HGSV	ss78015492	Dec 07, 2007 (129)
4	BCMHGSC_JDW	ss91967731	Mar 24, 2008 (129)
5	HUMANGENOME_JCVI	ss99069608	Feb 06, 2009 (130)
6	BGI	ss103885936	Dec 01, 2009 (131)
7	1000GENOMES	ss111117475	Jan 25, 2009 (130)
8	ILLUMINA-UK	ss116942848	Feb 14, 2009 (130)
9	ENSEMBL	ss135366584	Dec 01, 2009 (131)
10	ENSEMBL	ss138676489	Dec 01, 2009 (131)
11	GMI	ss155000580	Dec 01, 2009 (131)
12	COMPLETE_GENOMICS	ss163009079	Jul 04, 2010 (132)
13	BCM-HGSC-SUB	ss206158938	Jul 04, 2010 (132)
14	1000GENOMES	ss211123336	Jul 14, 2010 (132)
15	1000GENOMES	ss219935011	Jul 14, 2010 (132)
16	1000GENOMES	ss231674526	Jul 14, 2010 (132)
17	1000GENOMES	ss239114826	Jul 15, 2010 (132)
18	BL	ss252881254	May 09, 2011 (134)
19	GMI	ss276981172	May 04, 2012 (137)
20	GMI	ss284578669	Apr 25, 2013 (138)
21	PJP	ss292780813	May 09, 2011 (134)
22	SSMP	ss650034514	Apr 25, 2013 (138)
23	EVA-GONL	ss978188275	Aug 21, 2014 (142)
24	JMKIDD_LAB	ss1070109551	Aug 21, 2014 (142)
25	1000GENOMES	ss1302495062	Aug 21, 2014 (142)
26	DDI	ss1429303512	Apr 01, 2015 (144)
27	EVA_GENOME_DK	ss1579810253	Apr 01, 2015 (144)
28	EVA_DECODE	ss1587646984	Apr 01, 2015 (144)
29	EVA_UK10K_ALSPAC	ss1606249410	Apr 01, 2015 (144)
30	EVA_UK10K_TWINSUK	ss1649243443	Apr 01, 2015 (144)
31	HAMMER_LAB	ss1798730734	Sep 08, 2015 (146)
32	WEILL_CORNELL_DGM	ss1921440543	Feb 12, 2016 (147)
33	GENOMED	ss1969302088	Jul 19, 2016 (147)
34	JJLAB	ss2021269653	Sep 14, 2016 (149)
35	USC_VALOUEV	ss2149337643	Dec 20, 2016 (150)
36	HUMAN_LONGEVITY	ss2248465588	Dec 20, 2016 (150)
37	SYSTEMSBIOZJU	ss2625134198	Nov 08, 2017 (151)
38	GRF	ss2704692871	Nov 08, 2017 (151)
39	GNOMAD	ss2788702152	Nov 08, 2017 (151)
40	SWEGEN	ss2991707387	Nov 08, 2017 (151)
41	BIOINF_KMB_FNS_UNIBA	ss3024396223	Nov 08, 2017 (151)
42	CSHL	ss3344845615	Nov 08, 2017 (151)
43	URBANLAB	ss3647322544	Oct 11, 2018 (152)
44	EGCUT_WGS	ss3659603109	Jul 13, 2019 (153)
45	EVA_DECODE	ss3708487462	Jul 13, 2019 (153)
46	ACPOP	ss3729563568	Jul 13, 2019 (153)
47	EVA	ss3759562957	Jul 13, 2019 (153)
48	PACBIO	ss3784212686	Jul 13, 2019 (153)
49	PACBIO	ss3789743936	Jul 13, 2019 (153)
50	PACBIO	ss3794617633	Jul 13, 2019 (153)
51	KHV_HUMAN_GENOMES	ss3802713941	Jul 13, 2019 (153)
52	EVA	ss3827619610	Apr 25, 2020 (154)
53	EVA	ss3837230937	Apr 25, 2020 (154)
54	EVA	ss3842654305	Apr 25, 2020 (154)
55	SGDP_PRJ	ss3855060334	Apr 25, 2020 (154)
56	KRGDB	ss3900825263	Apr 25, 2020 (154)
57	KOGIC	ss3950519456	Apr 25, 2020 (154)
58	TOPMED	ss4551726823	Apr 26, 2021 (155)
59	TOMMO_GENOMICS	ss5157466551	Apr 26, 2021 (155)
60	1000G_HIGH_COVERAGE	ss5252782388	Oct 17, 2022 (156)
61	EVA	ss5337402491	Oct 17, 2022 (156)
62	HUGCELL_USP	ss5452313099	Oct 17, 2022 (156)
63	EVA	ss5506861839	Oct 17, 2022 (156)
64	1000G_HIGH_COVERAGE	ss5530485134	Oct 17, 2022 (156)
65	SANFORD_IMAGENETICS	ss5631386127	Oct 17, 2022 (156)
66	TOMMO_GENOMICS	ss5688642306	Oct 17, 2022 (156)
67	YY_MCH	ss5803412037	Oct 17, 2022 (156)
68	EVA	ss5825240207	Oct 17, 2022 (156)
69	EVA	ss5853454765	Oct 17, 2022 (156)
70	EVA	ss5867324178	Oct 17, 2022 (156)
71	EVA	ss5959640066	Oct 17, 2022 (156)
72	1000Genomes	NC_000003.11 - 2327564	Oct 11, 2018 (152)
73	1000Genomes_30x	NC_000003.12 - 2285880	Oct 17, 2022 (156)
74	The Avon Longitudinal Study of Parents and Children	NC_000003.11 - 2327564	Oct 11, 2018 (152)
75	Genetic variation in the Estonian population	NC_000003.11 - 2327564	Oct 11, 2018 (152)
76	The Danish reference pan genome	NC_000003.11 - 2327564	Apr 25, 2020 (154)
77	gnomAD - Genomes	NC_000003.12 - 2285880	Apr 26, 2021 (155)
78	Genome of the Netherlands Release 5	NC_000003.11 - 2327564	Apr 25, 2020 (154)
79	HapMap	NC_000003.12 - 2285880	Apr 25, 2020 (154)
80	KOREAN population from KRGDB	NC_000003.11 - 2327564	Apr 25, 2020 (154)
81	Korean Genome Project	NC_000003.12 - 2285880	Apr 25, 2020 (154)
82	Northern Sweden	NC_000003.11 - 2327564	Jul 13, 2019 (153)
83	Qatari	NC_000003.11 - 2327564	Apr 25, 2020 (154)
84	SGDP_PRJ	NC_000003.11 - 2327564	Apr 25, 2020 (154)
85	Siberian	NC_000003.11 - 2327564	Apr 25, 2020 (154)
86	8.3KJPN	NC_000003.11 - 2327564	Apr 26, 2021 (155)
87	14KJPN	NC_000003.12 - 2285880	Oct 17, 2022 (156)
88	TopMed	NC_000003.12 - 2285880	Apr 26, 2021 (155)
89	UK 10K study - Twins	NC_000003.11 - 2327564	Oct 11, 2018 (152)
90	A Vietnamese Genetic Variation Database	NC_000003.11 - 2327564	Jul 13, 2019 (153)
91	ALFA	NC_000003.12 - 2285880	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss78015492	NC_000003.9:2302563:C:G	NC_000003.12:2285879:C:G	(self)
ss91967731, ss111117475, ss116942848, ss163009079, ss206158938, ss211123336, ss252881254, ss276981172, ss284578669, ss292780813, ss1587646984	NC_000003.10:2302563:C:G	NC_000003.12:2285879:C:G	(self)
13630273, 7552183, 5341357, 5975192, 3312999, 8002657, 2848433, 3482473, 7077314, 1853997, 15435858, 7552183, 1642463, ss219935011, ss231674526, ss239114826, ss650034514, ss978188275, ss1070109551, ss1302495062, ss1429303512, ss1579810253, ss1606249410, ss1649243443, ss1798730734, ss1921440543, ss1969302088, ss2021269653, ss2149337643, ss2625134198, ss2704692871, ss2788702152, ss2991707387, ss3344845615, ss3659603109, ss3729563568, ss3759562957, ss3784212686, ss3789743936, ss3794617633, ss3827619610, ss3837230937, ss3855060334, ss3900825263, ss5157466551, ss5337402491, ss5506861839, ss5631386127, ss5825240207, ss5959640066	NC_000003.11:2327563:C:G	NC_000003.12:2285879:C:G	(self)
18011069, 96939478, 2286161, 6897457, 22479410, 389104378, 12644920606, ss2248465588, ss3024396223, ss3647322544, ss3708487462, ss3802713941, ss3842654305, ss3950519456, ss4551726823, ss5252782388, ss5452313099, ss5530485134, ss5688642306, ss5803412037, ss5853454765, ss5867324178	NC_000003.12:2285879:C:G	NC_000003.12:2285879:C:G	(self)
ss22016416	NT_022517.16:2267563:C:G	NC_000003.12:2285879:C:G	(self)
ss41997832, ss99069608, ss103885936, ss135366584, ss138676489, ss155000580	NT_022517.18:2267563:C:G	NC_000003.12:2285879:C:G	(self)
12644920606	NC_000003.12:2285879:C:T	NC_000003.12:2285879:C:T	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs13096302

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs13096302