Name: rs17108533
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs17108533

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr14:70783085 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: C>A / C>G / C>T
Variation Type: SNV Single Nucleotide Variation
Frequency: T=0.102837 (27220/264690, TOPMED)
T=0.083907 (12510/149094, ALFA)
T=0.105694 (14805/140074, GnomAD) (+ 22 more)
T=0.02297 (649/28258, 14KJPN)
T=0.02267 (380/16760, 8.3KJPN)
T=0.0921 (590/6404, 1000G_30x)
T=0.0887 (444/5008, 1000G)
T=0.0819 (367/4480, Estonian)
T=0.0688 (265/3854, ALSPAC)
T=0.0779 (289/3708, TWINSUK)
T=0.0264 (77/2922, KOREAN)
T=0.0975 (184/1888, HapMap)
T=0.0278 (51/1832, Korea1K)
T=0.078 (78/998, GoNL)
T=0.035 (28/792, PRJEB37584)
T=0.048 (30/626, Chileans)
T=0.100 (60/600, NorthernSweden)
T=0.083 (18/216, Qatari)
T=0.119 (25/210, Vietnamese)
T=0.08 (6/74, Ancient Sardinia)
C=0.50 (36/72, SGDP_PRJ)
T=0.50 (36/72, SGDP_PRJ)
T=0.10 (4/40, GENOME_DK)
C=0.5 (1/2, Siberian)
T=0.5 (1/2, Siberian)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: MAP3K9 : Intron Variant
Publications: 1 citation
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541

Population	Group	Sample Size	Ref Allele	Alt Allele
Total	Global	149310	C=0.916121	T=0.083879
European	Sub	124234	C=0.915265	T=0.084735
African	Sub	4992	C=0.8329	T=0.1671
African Others	Sub	180	C=0.756	T=0.244
African American	Sub	4812	C=0.8358	T=0.1642
Asian	Sub	6304	C=0.9667	T=0.0333
East Asian	Sub	4454	C=0.9677	T=0.0323
Other Asian	Sub	1850	C=0.9643	T=0.0357
Latin American 1	Sub	582	C=0.904	T=0.096
Latin American 2	Sub	3088	C=0.9420	T=0.0580
South Asian	Sub	286	C=0.979	T=0.021
Other	Sub	9824	C=0.9275	T=0.0725

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download

Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	C=0.897163	T=0.102837
Allele Frequency Aggregator	Total	Global	149094	C=0.916093	T=0.083907
Allele Frequency Aggregator	European	Sub	124054	C=0.915247	T=0.084753
Allele Frequency Aggregator	Other	Sub	9802	C=0.9274	T=0.0726
Allele Frequency Aggregator	Asian	Sub	6304	C=0.9667	T=0.0333
Allele Frequency Aggregator	African	Sub	4978	C=0.8327	T=0.1673
Allele Frequency Aggregator	Latin American 2	Sub	3088	C=0.9420	T=0.0580
Allele Frequency Aggregator	Latin American 1	Sub	582	C=0.904	T=0.096
Allele Frequency Aggregator	South Asian	Sub	286	C=0.979	T=0.021
gnomAD - Genomes	Global	Study-wide	140074	C=0.894306	T=0.105694
gnomAD - Genomes	European	Sub	75894	C=0.91298	T=0.08702
gnomAD - Genomes	African	Sub	41942	C=0.83692	T=0.16308
gnomAD - Genomes	American	Sub	13636	C=0.93840	T=0.06160
gnomAD - Genomes	Ashkenazi Jewish	Sub	3322	C=0.9398	T=0.0602
gnomAD - Genomes	East Asian	Sub	3128	C=0.9616	T=0.0384
gnomAD - Genomes	Other	Sub	2152	C=0.9066	T=0.0934
14KJPN	JAPANESE	Study-wide	28258	C=0.97703	T=0.02297
8.3KJPN	JAPANESE	Study-wide	16760	C=0.97733	T=0.02267
1000Genomes_30x	Global	Study-wide	6404	C=0.9079	T=0.0921
1000Genomes_30x	African	Sub	1786	C=0.8303	T=0.1697
1000Genomes_30x	Europe	Sub	1266	C=0.8965	T=0.1035
1000Genomes_30x	South Asian	Sub	1202	C=0.9534	T=0.0466
1000Genomes_30x	East Asian	Sub	1170	C=0.9692	T=0.0308
1000Genomes_30x	American	Sub	980	C=0.935	T=0.065
1000Genomes	Global	Study-wide	5008	C=0.9113	T=0.0887
1000Genomes	African	Sub	1322	C=0.8313	T=0.1687
1000Genomes	East Asian	Sub	1008	C=0.9692	T=0.0308
1000Genomes	Europe	Sub	1006	C=0.8956	T=0.1044
1000Genomes	South Asian	Sub	978	C=0.961	T=0.039
1000Genomes	American	Sub	694	C=0.932	T=0.068
Genetic variation in the Estonian population	Estonian	Study-wide	4480	C=0.9181	T=0.0819
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.9312	T=0.0688
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.9221	T=0.0779
KOREAN population from KRGDB	KOREAN	Study-wide	2922	C=0.9736	T=0.0264
HapMap	Global	Study-wide	1888	C=0.9025	T=0.0975
HapMap	American	Sub	770	C=0.938	T=0.062
HapMap	African	Sub	690	C=0.839	T=0.161
HapMap	Asian	Sub	254	C=0.980	T=0.020
HapMap	Europe	Sub	174	C=0.885	T=0.115
Korean Genome Project	KOREAN	Study-wide	1832	C=0.9722	T=0.0278
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	C=0.922	T=0.078
CNV burdens in cranial meningiomas	Global	Study-wide	792	C=0.965	T=0.035
CNV burdens in cranial meningiomas	CRM	Sub	792	C=0.965	T=0.035
Chileans	Chilean	Study-wide	626	C=0.952	T=0.048
Northern Sweden	ACPOP	Study-wide	600	C=0.900	T=0.100
Qatari	Global	Study-wide	216	C=0.917	T=0.083
A Vietnamese Genetic Variation Database	Global	Study-wide	210	C=0.881	T=0.119
Ancient Sardinia genome-wide 1240k capture data generation and analysis	Global	Study-wide	74	C=0.92	T=0.08
SGDP_PRJ	Global	Study-wide	72	C=0.50	T=0.50
The Danish reference pan genome	Danish	Study-wide	40	C=0.90	T=0.10
Siberian	Global	Study-wide	2	C=0.5	T=0.5

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 14	NC_000014.9:g.70783085C>A
GRCh38.p14 chr 14	NC_000014.9:g.70783085C>G
GRCh38.p14 chr 14	NC_000014.9:g.70783085C>T
GRCh37.p13 chr 14	NC_000014.8:g.71249802C>A
GRCh37.p13 chr 14	NC_000014.8:g.71249802C>G
GRCh37.p13 chr 14	NC_000014.8:g.71249802C>T

Gene: MAP3K9, mitogen-activated protein kinase kinase kinase 9 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
MAP3K9 transcript variant 2	NM_001284230.2:c.820+1758… NM_001284230.2:c.820+17582G>T	N/A	Intron Variant
MAP3K9 transcript variant 3	NM_001284231.1:c.-16+138G… NM_001284231.1:c.-16+138G>T	N/A	Intron Variant
MAP3K9 transcript variant 4	NM_001284232.1:c.-99+138G… NM_001284232.1:c.-99+138G>T	N/A	Intron Variant
MAP3K9 transcript variant 1	NM_033141.4:c.820+17582G>T	N/A	Intron Variant
MAP3K9 transcript variant X2	XM_005267683.6:c.820+1758… XM_005267683.6:c.820+17582G>T	N/A	Intron Variant
MAP3K9 transcript variant X1	XM_011536788.4:c.820+1758… XM_011536788.4:c.820+17582G>T	N/A	Intron Variant
MAP3K9 transcript variant X3	XM_011536792.1:c.-99+138G… XM_011536792.1:c.-99+138G>T	N/A	Intron Variant
MAP3K9 transcript variant X4	XM_011536794.3:c.	N/A	Genic Upstream Transcript Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	C=	A	G	T
GRCh38.p14 chr 14	NC_000014.9:g.70783085=	NC_000014.9:g.70783085C>A	NC_000014.9:g.70783085C>G	NC_000014.9:g.70783085C>T
GRCh37.p13 chr 14	NC_000014.8:g.71249802=	NC_000014.8:g.71249802C>A	NC_000014.8:g.71249802C>G	NC_000014.8:g.71249802C>T
MAP3K9 transcript variant 2	NM_001284230.2:c.820+17582=	NM_001284230.2:c.820+17582G>T	NM_001284230.2:c.820+17582G>C	NM_001284230.2:c.820+17582G>A
MAP3K9 transcript variant 3	NM_001284231.1:c.-16+138=	NM_001284231.1:c.-16+138G>T	NM_001284231.1:c.-16+138G>C	NM_001284231.1:c.-16+138G>A
MAP3K9 transcript variant 4	NM_001284232.1:c.-99+138=	NM_001284232.1:c.-99+138G>T	NM_001284232.1:c.-99+138G>C	NM_001284232.1:c.-99+138G>A
MAP3K9 transcript	NM_033141.2:c.820+17582=	NM_033141.2:c.820+17582G>T	NM_033141.2:c.820+17582G>C	NM_033141.2:c.820+17582G>A
MAP3K9 transcript variant 1	NM_033141.4:c.820+17582=	NM_033141.4:c.820+17582G>T	NM_033141.4:c.820+17582G>C	NM_033141.4:c.820+17582G>A
MAP3K9 transcript variant X1	XM_005267682.1:c.820+17582=	XM_005267682.1:c.820+17582G>T	XM_005267682.1:c.820+17582G>C	XM_005267682.1:c.820+17582G>A
MAP3K9 transcript variant X2	XM_005267683.1:c.820+17582=	XM_005267683.1:c.820+17582G>T	XM_005267683.1:c.820+17582G>C	XM_005267683.1:c.820+17582G>A
MAP3K9 transcript variant X2	XM_005267683.6:c.820+17582=	XM_005267683.6:c.820+17582G>T	XM_005267683.6:c.820+17582G>C	XM_005267683.6:c.820+17582G>A
MAP3K9 transcript variant X3	XM_005267684.1:c.-99+138=	XM_005267684.1:c.-99+138G>T	XM_005267684.1:c.-99+138G>C	XM_005267684.1:c.-99+138G>A
MAP3K9 transcript variant X4	XM_005267685.1:c.-16+138=	XM_005267685.1:c.-16+138G>T	XM_005267685.1:c.-16+138G>C	XM_005267685.1:c.-16+138G>A
MAP3K9 transcript variant X1	XM_011536788.4:c.820+17582=	XM_011536788.4:c.820+17582G>T	XM_011536788.4:c.820+17582G>C	XM_011536788.4:c.820+17582G>A
MAP3K9 transcript variant X3	XM_011536792.1:c.-99+138=	XM_011536792.1:c.-99+138G>T	XM_011536792.1:c.-99+138G>C	XM_011536792.1:c.-99+138G>A

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

85 SubSNP, 23 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	PERLEGEN	ss23652092	Sep 20, 2004 (123)
2	AFFY	ss66274521	Jul 04, 2010 (132)
3	PERLEGEN	ss69161355	May 16, 2007 (127)
4	AFFY	ss75924939	Dec 07, 2007 (129)
5	KRIBB_YJKIM	ss83194713	Dec 15, 2007 (130)
6	HGSV	ss84255112	Dec 14, 2007 (130)
7	HUMANGENOME_JCVI	ss96926295	Feb 04, 2009 (130)
8	1000GENOMES	ss108437398	Jan 23, 2009 (130)
9	ILLUMINA-UK	ss118564831	Feb 14, 2009 (130)
10	ENSEMBL	ss142721045	Dec 01, 2009 (131)
11	AFFY	ss169199782	Jul 04, 2010 (132)
12	BUSHMAN	ss200235654	Jul 04, 2010 (132)
13	1000GENOMES	ss211536055	Jul 14, 2010 (132)
14	1000GENOMES	ss226637889	Jul 14, 2010 (132)
15	1000GENOMES	ss236593371	Jul 15, 2010 (132)
16	BL	ss255084525	May 09, 2011 (134)
17	PJP	ss291624868	May 09, 2011 (134)
18	GMI	ss475805481	May 04, 2012 (137)
19	EXOME_CHIP	ss491486783	May 04, 2012 (137)
20	TISHKOFF	ss564172351	Apr 25, 2013 (138)
21	ILLUMINA	ss780682350	Sep 08, 2015 (146)
22	ILLUMINA	ss783355697	Sep 08, 2015 (146)
23	EVA-GONL	ss991286400	Aug 21, 2014 (142)
24	JMKIDD_LAB	ss1079760392	Aug 21, 2014 (142)
25	1000GENOMES	ss1351533071	Aug 21, 2014 (142)
26	DDI	ss1427463114	Apr 01, 2015 (144)
27	EVA_GENOME_DK	ss1577336475	Apr 01, 2015 (144)
28	EVA_UK10K_ALSPAC	ss1632020966	Apr 01, 2015 (144)
29	EVA_UK10K_TWINSUK	ss1675014999	Apr 01, 2015 (144)
30	EVA_DECODE	ss1695290137	Apr 01, 2015 (144)
31	EVA_SVP	ss1713454608	Apr 01, 2015 (144)
32	ILLUMINA	ss1752140587	Sep 08, 2015 (146)
33	HAMMER_LAB	ss1807978215	Sep 08, 2015 (146)
34	ILLUMINA	ss1917890166	Feb 12, 2016 (147)
35	WEILL_CORNELL_DGM	ss1934658446	Feb 12, 2016 (147)
36	ILLUMINA	ss1946380294	Feb 12, 2016 (147)
37	AMU	ss1966652178	Feb 12, 2016 (147)
38	JJLAB	ss2028110327	Sep 14, 2016 (149)
39	USC_VALOUEV	ss2156486179	Dec 20, 2016 (150)
40	HUMAN_LONGEVITY	ss2203079455	Dec 20, 2016 (150)
41	GRF	ss2700917227	Nov 08, 2017 (151)
42	GNOMAD	ss2929202950	Nov 08, 2017 (151)
43	AFFY	ss2985025231	Nov 08, 2017 (151)
44	SWEGEN	ss3012416825	Nov 08, 2017 (151)
45	ILLUMINA	ss3021581168	Nov 08, 2017 (151)
46	BIOINF_KMB_FNS_UNIBA	ss3027879933	Nov 08, 2017 (151)
47	CSHL	ss3350868666	Nov 08, 2017 (151)
48	ILLUMINA	ss3627250020	Oct 12, 2018 (152)
49	URBANLAB	ss3650232974	Oct 12, 2018 (152)
50	ILLUMINA	ss3651975896	Oct 12, 2018 (152)
51	ILLUMINA	ss3653796440	Oct 12, 2018 (152)
52	EGCUT_WGS	ss3679673095	Jul 13, 2019 (153)
53	EVA_DECODE	ss3696940294	Jul 13, 2019 (153)
54	ILLUMINA	ss3725459026	Jul 13, 2019 (153)
55	ACPOP	ss3740498784	Jul 13, 2019 (153)
56	ILLUMINA	ss3744413353	Jul 13, 2019 (153)
57	EVA	ss3752485285	Jul 13, 2019 (153)
58	ILLUMINA	ss3772382412	Jul 13, 2019 (153)
59	KHV_HUMAN_GENOMES	ss3817814652	Jul 13, 2019 (153)
60	EVA	ss3833987202	Apr 27, 2020 (154)
61	EVA	ss3840584893	Apr 27, 2020 (154)
62	EVA	ss3846074388	Apr 27, 2020 (154)
63	SGDP_PRJ	ss3881784909	Apr 27, 2020 (154)
64	KRGDB	ss3930828739	Apr 27, 2020 (154)
65	KOGIC	ss3975192396	Apr 27, 2020 (154)
66	EVA	ss3984693579	Apr 27, 2021 (155)
67	EVA	ss3985687746	Apr 27, 2021 (155)
68	TOPMED	ss4975249587	Apr 27, 2021 (155)
69	TOMMO_GENOMICS	ss5213829478	Apr 27, 2021 (155)
70	EVA	ss5237541883	Apr 27, 2021 (155)
71	1000G_HIGH_COVERAGE	ss5296686802	Oct 16, 2022 (156)
72	EVA	ss5416103848	Oct 16, 2022 (156)
73	HUGCELL_USP	ss5490684990	Oct 16, 2022 (156)
74	EVA	ss5511289739	Oct 16, 2022 (156)
75	1000G_HIGH_COVERAGE	ss5597200408	Oct 16, 2022 (156)
76	SANFORD_IMAGENETICS	ss5624347273	Oct 16, 2022 (156)
77	SANFORD_IMAGENETICS	ss5656484105	Oct 16, 2022 (156)
78	TOMMO_GENOMICS	ss5766804638	Oct 16, 2022 (156)
79	YY_MCH	ss5814866132	Oct 16, 2022 (156)
80	EVA	ss5841292449	Oct 16, 2022 (156)
81	EVA	ss5847439587	Oct 16, 2022 (156)
82	EVA	ss5847725186	Oct 16, 2022 (156)
83	EVA	ss5901874247	Oct 16, 2022 (156)
84	EVA	ss5947929172	Oct 16, 2022 (156)
85	EVA	ss5979444967	Oct 16, 2022 (156)
86	1000Genomes	NC_000014.8 - 71249802	Oct 12, 2018 (152)
87	1000Genomes_30x	NC_000014.9 - 70783085	Oct 16, 2022 (156)
88	The Avon Longitudinal Study of Parents and Children	NC_000014.8 - 71249802	Oct 12, 2018 (152)
89	Chileans	NC_000014.8 - 71249802	Apr 27, 2020 (154)
90	Genetic variation in the Estonian population	NC_000014.8 - 71249802	Oct 12, 2018 (152)
91	The Danish reference pan genome	NC_000014.8 - 71249802	Apr 27, 2020 (154)
92	gnomAD - Genomes	NC_000014.9 - 70783085	Apr 27, 2021 (155)
93	Genome of the Netherlands Release 5	NC_000014.8 - 71249802	Apr 27, 2020 (154)
94	HapMap	NC_000014.9 - 70783085	Apr 27, 2020 (154)
95	KOREAN population from KRGDB	NC_000014.8 - 71249802	Apr 27, 2020 (154)
96	Korean Genome Project	NC_000014.9 - 70783085	Apr 27, 2020 (154)
97	Northern Sweden	NC_000014.8 - 71249802	Jul 13, 2019 (153)
98	Ancient Sardinia genome-wide 1240k capture data generation and analysis	NC_000014.8 - 71249802	Apr 27, 2021 (155)
99	CNV burdens in cranial meningiomas	NC_000014.8 - 71249802	Apr 27, 2021 (155)
100	Qatari	NC_000014.8 - 71249802	Apr 27, 2020 (154)
101	SGDP_PRJ	NC_000014.8 - 71249802	Apr 27, 2020 (154)
102	Siberian	NC_000014.8 - 71249802	Apr 27, 2020 (154)
103	8.3KJPN	NC_000014.8 - 71249802	Apr 27, 2021 (155)
104	14KJPN	NC_000014.9 - 70783085	Oct 16, 2022 (156)
105	TopMed	NC_000014.9 - 70783085	Apr 27, 2021 (155)
106	UK 10K study - Twins	NC_000014.8 - 71249802	Oct 12, 2018 (152)
107	A Vietnamese Genetic Variation Database	NC_000014.8 - 71249802	Jul 13, 2019 (153)
108	ALFA	NC_000014.9 - 70783085	Apr 27, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs58074844	May 24, 2008 (130)
rs58758243	Feb 26, 2009 (130)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss66274521	NT_026437.13:52559561:C:A	NC_000014.9:70783084:C:A	(self)
ss66274521	NT_026437.13:52559561:C:G	NC_000014.9:70783084:C:G	(self)
ss84255112, ss108437398, ss118564831, ss200235654, ss211536055, ss255084525, ss291624868, ss475805481, ss1695290137, ss1713454608	NC_000014.7:70319554:C:T	NC_000014.9:70783084:C:T	(self)
64533886, 35858298, 141281, 25411343, 3658741, 16013776, 38006133, 13783649, 913673, 243096, 16700376, 33801889, 9002533, 71798785, 35858298, 7976716, ss226637889, ss236593371, ss491486783, ss564172351, ss780682350, ss783355697, ss991286400, ss1079760392, ss1351533071, ss1427463114, ss1577336475, ss1632020966, ss1675014999, ss1752140587, ss1807978215, ss1917890166, ss1934658446, ss1946380294, ss1966652178, ss2028110327, ss2156486179, ss2700917227, ss2929202950, ss2985025231, ss3012416825, ss3021581168, ss3350868666, ss3627250020, ss3651975896, ss3653796440, ss3679673095, ss3740498784, ss3744413353, ss3752485285, ss3772382412, ss3833987202, ss3840584893, ss3881784909, ss3930828739, ss3984693579, ss3985687746, ss5213829478, ss5237541883, ss5416103848, ss5511289739, ss5624347273, ss5656484105, ss5841292449, ss5847439587, ss5847725186, ss5947929172, ss5979444967	NC_000014.8:71249801:C:T	NC_000014.9:70783084:C:T	(self)
84726343, 455014798, 1171176, 31570397, 100641742, 190795246, 1055512111, ss2203079455, ss3027879933, ss3650232974, ss3696940294, ss3725459026, ss3817814652, ss3846074388, ss3975192396, ss4975249587, ss5296686802, ss5490684990, ss5597200408, ss5766804638, ss5814866132, ss5901874247	NC_000014.9:70783084:C:T	NC_000014.9:70783084:C:T	(self)
ss23652092, ss69161355, ss75924939, ss83194713, ss96926295, ss142721045, ss169199782	NT_026437.12:52249801:C:T	NC_000014.9:70783084:C:T	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

1 citation for rs17108533

PMID	Title	Author	Year	Journal
21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	McClay JL et al.	2011	Neuropsychopharmacology

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs17108533