Name: rs2153299
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs2153299

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr10:28463177 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: T>A / T>C
Variation Type: SNV Single Nucleotide Variation
Frequency: C=0.447993 (140479/313574, ALFA)
C=0.418123 (110673/264690, TOPMED)
C=0.449038 (92087/205076, GENOGRAPHIC) (+ 24 more)
C=0.416715 (58326/139966, GnomAD)
C=0.41178 (32219/78244, PAGE_STUDY)
T=0.44837 (12670/28258, 14KJPN)
T=0.44517 (7461/16760, 8.3KJPN)
C=0.4519 (2894/6404, 1000G_30x)
C=0.4605 (2306/5008, 1000G)
C=0.3942 (1766/4480, Estonian)
C=0.4450 (1715/3854, ALSPAC)
C=0.4423 (1640/3708, TWINSUK)
C=0.4805 (1408/2930, KOREAN)
T=0.4794 (999/2084, HGDP_Stanford)
C=0.4450 (834/1874, HapMap)
T=0.4902 (898/1832, Korea1K)
T=0.4162 (472/1134, Daghestan)
C=0.445 (444/998, GoNL)
T=0.487 (381/782, PRJEB37584)
C=0.462 (277/600, NorthernSweden)
T=0.307 (115/374, SGDP_PRJ)
T=0.477 (103/216, Qatari)
T=0.500 (107/214, Vietnamese)
C=0.500 (107/214, Vietnamese)
T=0.40 (19/48, Siberian)
C=0.39 (18/46, Ancient Sardinia)
C=0.38 (15/40, GENOME_DK)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: LINC02652 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541

Population	Group	Sample Size	Ref Allele	Alt Allele
Total	Global	318702	T=0.552573	C=0.447427
European	Sub	278868	T=0.551254	C=0.448746
African	Sub	12160	T=0.66752	C=0.33248
African Others	Sub	456	T=0.689	C=0.311
African American	Sub	11704	T=0.66670	C=0.33330
Asian	Sub	3938	T=0.4893	C=0.5107
East Asian	Sub	3192	T=0.5075	C=0.4925
Other Asian	Sub	746	T=0.412	C=0.588
Latin American 1	Sub	1134	T=0.5529	C=0.4471
Latin American 2	Sub	7200	T=0.5379	C=0.4621
South Asian	Sub	5220	T=0.4431	C=0.5569
Other	Sub	10182	T=0.54233	C=0.45767

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	313574	T=0.552007	C=0.447993
Allele Frequency Aggregator	European	Sub	275700	T=0.551269	C=0.448731
Allele Frequency Aggregator	African	Sub	11018	T=0.66455	C=0.33545
Allele Frequency Aggregator	Other	Sub	9364	T=0.5391	C=0.4609
Allele Frequency Aggregator	Latin American 2	Sub	7200	T=0.5379	C=0.4621
Allele Frequency Aggregator	South Asian	Sub	5220	T=0.4431	C=0.5569
Allele Frequency Aggregator	Asian	Sub	3938	T=0.4893	C=0.5107
Allele Frequency Aggregator	Latin American 1	Sub	1134	T=0.5529	C=0.4471
TopMed	Global	Study-wide	264690	T=0.581877	C=0.418123
Genographic Project	Global	Study-wide	205076	T=0.550962	C=0.449038
gnomAD - Genomes	Global	Study-wide	139966	T=0.583285	C=0.416715
gnomAD - Genomes	European	Sub	75830	T=0.55092	C=0.44908
gnomAD - Genomes	African	Sub	41926	T=0.66789	C=0.33211
gnomAD - Genomes	American	Sub	13624	T=0.53406	C=0.46594
gnomAD - Genomes	Ashkenazi Jewish	Sub	3320	T=0.5663	C=0.4337
gnomAD - Genomes	East Asian	Sub	3120	T=0.4853	C=0.5147
gnomAD - Genomes	Other	Sub	2146	T=0.5555	C=0.4445
The PAGE Study	Global	Study-wide	78244	T=0.58822	C=0.41178
The PAGE Study	AfricanAmerican	Sub	32352	T=0.66398	C=0.33602
The PAGE Study	Mexican	Sub	10724	T=0.55502	C=0.44498
The PAGE Study	Asian	Sub	8264	T=0.4691	C=0.5309
The PAGE Study	PuertoRican	Sub	7880	T=0.5584	C=0.4416
The PAGE Study	NativeHawaiian	Sub	4510	T=0.5528	C=0.4472
The PAGE Study	Cuban	Sub	4204	T=0.5514	C=0.4486
The PAGE Study	Dominican	Sub	3804	T=0.5744	C=0.4256
The PAGE Study	CentralAmerican	Sub	2442	T=0.5061	C=0.4939
The PAGE Study	SouthAmerican	Sub	1958	T=0.5281	C=0.4719
The PAGE Study	NativeAmerican	Sub	1254	T=0.5494	C=0.4506
The PAGE Study	SouthAsian	Sub	852	T=0.423	C=0.577
14KJPN	JAPANESE	Study-wide	28258	T=0.44837	C=0.55163
8.3KJPN	JAPANESE	Study-wide	16760	T=0.44517	C=0.55483
1000Genomes_30x	Global	Study-wide	6404	T=0.5481	C=0.4519
1000Genomes_30x	African	Sub	1786	T=0.6943	C=0.3057
1000Genomes_30x	Europe	Sub	1266	T=0.5442	C=0.4558
1000Genomes_30x	South Asian	Sub	1202	T=0.3952	C=0.6048
1000Genomes_30x	East Asian	Sub	1170	T=0.5009	C=0.4991
1000Genomes_30x	American	Sub	980	T=0.531	C=0.469
1000Genomes	Global	Study-wide	5008	T=0.5395	C=0.4605
1000Genomes	African	Sub	1322	T=0.6884	C=0.3116
1000Genomes	East Asian	Sub	1008	T=0.4950	C=0.5050
1000Genomes	Europe	Sub	1006	T=0.5427	C=0.4573
1000Genomes	South Asian	Sub	978	T=0.391	C=0.609
1000Genomes	American	Sub	694	T=0.526	C=0.474
Genetic variation in the Estonian population	Estonian	Study-wide	4480	T=0.6058	C=0.3942
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.5550	C=0.4450
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.5577	C=0.4423
KOREAN population from KRGDB	KOREAN	Study-wide	2930	T=0.5195	A=0.0000, C=0.4805
HGDP-CEPH-db Supplement 1	Global	Study-wide	2084	T=0.4794	C=0.5206
HGDP-CEPH-db Supplement 1	Est_Asia	Sub	470	T=0.485	C=0.515
HGDP-CEPH-db Supplement 1	Central_South_Asia	Sub	414	T=0.348	C=0.652
HGDP-CEPH-db Supplement 1	Middle_Est	Sub	350	T=0.454	C=0.546
HGDP-CEPH-db Supplement 1	Europe	Sub	320	T=0.550	C=0.450
HGDP-CEPH-db Supplement 1	Africa	Sub	242	T=0.752	C=0.248
HGDP-CEPH-db Supplement 1	America	Sub	216	T=0.449	C=0.551
HGDP-CEPH-db Supplement 1	Oceania	Sub	72	T=0.18	C=0.82
HapMap	Global	Study-wide	1874	T=0.5550	C=0.4450
HapMap	American	Sub	760	T=0.492	C=0.508
HapMap	African	Sub	684	T=0.662	C=0.338
HapMap	Asian	Sub	254	T=0.472	C=0.528
HapMap	Europe	Sub	176	T=0.528	C=0.472
Korean Genome Project	KOREAN	Study-wide	1832	T=0.4902	C=0.5098
Genome-wide autozygosity in Daghestan	Global	Study-wide	1134	T=0.4162	C=0.5838
Genome-wide autozygosity in Daghestan	Daghestan	Sub	628	T=0.387	C=0.613
Genome-wide autozygosity in Daghestan	Near_East	Sub	144	T=0.507	C=0.493
Genome-wide autozygosity in Daghestan	Central Asia	Sub	122	T=0.467	C=0.533
Genome-wide autozygosity in Daghestan	Europe	Sub	106	T=0.491	C=0.509
Genome-wide autozygosity in Daghestan	South Asian	Sub	98	T=0.30	C=0.70
Genome-wide autozygosity in Daghestan	Caucasus	Sub	36	T=0.50	C=0.50
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	T=0.555	C=0.445
CNV burdens in cranial meningiomas	Global	Study-wide	782	T=0.487	C=0.513
CNV burdens in cranial meningiomas	CRM	Sub	782	T=0.487	C=0.513
Northern Sweden	ACPOP	Study-wide	600	T=0.538	C=0.462
SGDP_PRJ	Global	Study-wide	374	T=0.307	C=0.693
Qatari	Global	Study-wide	216	T=0.477	C=0.523
A Vietnamese Genetic Variation Database	Global	Study-wide	214	T=0.500	C=0.500
Siberian	Global	Study-wide	48	T=0.40	C=0.60
Ancient Sardinia genome-wide 1240k capture data generation and analysis	Global	Study-wide	46	T=0.61	C=0.39
The Danish reference pan genome	Danish	Study-wide	40	T=0.62	C=0.38

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 10	NC_000010.11:g.28463177T>A
GRCh38.p14 chr 10	NC_000010.11:g.28463177T>C
GRCh37.p13 chr 10	NC_000010.10:g.28752106T>A
GRCh37.p13 chr 10	NC_000010.10:g.28752106T>C

Gene: LINC02652, long intergenic non-protein coding RNA 2652 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
LINC02652 transcript	NR_134496.1:n.	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	T=	A	C
GRCh38.p14 chr 10	NC_000010.11:g.28463177=	NC_000010.11:g.28463177T>A	NC_000010.11:g.28463177T>C
GRCh37.p13 chr 10	NC_000010.10:g.28752106=	NC_000010.10:g.28752106T>A	NC_000010.10:g.28752106T>C

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

147 SubSNP, 26 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	TSC-CSHL	ss3083031	Jun 15, 2001 (96)
2	TSC-CSHL	ss5358366	Oct 08, 2002 (108)
3	SC_SNP	ss15974775	Feb 27, 2004 (120)
4	CSHL-HAPMAP	ss17403391	Feb 27, 2004 (120)
5	SSAHASNP	ss20613130	Apr 05, 2004 (121)
6	PERLEGEN	ss24446704	Sep 20, 2004 (123)
7	ABI	ss38655299	Mar 14, 2006 (126)
8	ILLUMINA	ss66835587	Nov 30, 2006 (127)
9	ILLUMINA	ss67228736	Nov 30, 2006 (127)
10	ILLUMINA	ss67623975	Nov 30, 2006 (127)
11	PERLEGEN	ss69075128	May 17, 2007 (127)
12	ILLUMINA	ss70707053	May 24, 2008 (130)
13	ILLUMINA	ss71273886	May 17, 2007 (127)
14	ILLUMINA	ss75907141	Dec 07, 2007 (129)
15	ILLUMINA	ss79116986	Dec 15, 2007 (130)
16	KRIBB_YJKIM	ss83983161	Dec 15, 2007 (130)
17	HGSV	ss85355821	Dec 15, 2007 (130)
18	BCMHGSC_JDW	ss88142050	Mar 23, 2008 (129)
19	BGI	ss102865789	Dec 01, 2009 (131)
20	1000GENOMES	ss115453755	Jan 25, 2009 (130)
21	ILLUMINA-UK	ss119103893	Feb 15, 2009 (130)
22	ILLUMINA	ss121930506	Dec 01, 2009 (131)
23	ENSEMBL	ss131756586	Dec 01, 2009 (131)
24	ILLUMINA	ss153866637	Dec 01, 2009 (131)
25	GMI	ss154760695	Dec 01, 2009 (131)
26	ILLUMINA	ss159362977	Dec 01, 2009 (131)
27	ILLUMINA	ss160507764	Dec 01, 2009 (131)
28	ENSEMBL	ss161328595	Dec 01, 2009 (131)
29	COMPLETE_GENOMICS	ss169513579	Jul 04, 2010 (132)
30	COMPLETE_GENOMICS	ss170708803	Jul 04, 2010 (132)
31	ILLUMINA	ss171049115	Jul 04, 2010 (132)
32	ILLUMINA	ss173144723	Jul 04, 2010 (132)
33	BUSHMAN	ss201322610	Jul 04, 2010 (132)
34	1000GENOMES	ss224644730	Jul 14, 2010 (132)
35	1000GENOMES	ss235113266	Jul 15, 2010 (132)
36	1000GENOMES	ss241833924	Jul 15, 2010 (132)
37	BL	ss254169109	May 09, 2011 (134)
38	GMI	ss280536998	May 04, 2012 (137)
39	GMI	ss286154330	Apr 25, 2013 (138)
40	PJP	ss291003486	May 09, 2011 (134)
41	ILLUMINA	ss480441655	May 04, 2012 (137)
42	ILLUMINA	ss480455532	May 04, 2012 (137)
43	ILLUMINA	ss481245686	Sep 08, 2015 (146)
44	ILLUMINA	ss485018267	May 04, 2012 (137)
45	ILLUMINA	ss537045894	Sep 08, 2015 (146)
46	TISHKOFF	ss561862912	Apr 25, 2013 (138)
47	SSMP	ss656475459	Apr 25, 2013 (138)
48	ILLUMINA	ss778482964	Aug 21, 2014 (142)
49	ILLUMINA	ss782955432	Sep 08, 2015 (146)
50	ILLUMINA	ss783917609	Aug 21, 2014 (142)
51	ILLUMINA	ss825447504	Jul 19, 2016 (147)
52	ILLUMINA	ss832211503	Sep 08, 2015 (146)
53	ILLUMINA	ss832874855	Jul 13, 2019 (153)
54	ILLUMINA	ss833938861	Aug 21, 2014 (142)
55	EVA-GONL	ss987335397	Aug 21, 2014 (142)
56	JMKIDD_LAB	ss1076872636	Aug 21, 2014 (142)
57	1000GENOMES	ss1336820016	Aug 21, 2014 (142)
58	HAMMER_LAB	ss1397577744	Sep 08, 2015 (146)
59	DDI	ss1426265662	Apr 01, 2015 (144)
60	EVA_GENOME_DK	ss1575008428	Apr 01, 2015 (144)
61	EVA_DECODE	ss1596997973	Apr 01, 2015 (144)
62	EVA_UK10K_ALSPAC	ss1624274312	Apr 01, 2015 (144)
63	EVA_UK10K_TWINSUK	ss1667268345	Apr 01, 2015 (144)
64	EVA_SVP	ss1713168836	Apr 01, 2015 (144)
65	ILLUMINA	ss1751964371	Sep 08, 2015 (146)
66	HAMMER_LAB	ss1806322818	Sep 08, 2015 (146)
67	WEILL_CORNELL_DGM	ss1930668638	Feb 12, 2016 (147)
68	ILLUMINA	ss1946279266	Feb 12, 2016 (147)
69	ILLUMINA	ss1959250650	Feb 12, 2016 (147)
70	GENOMED	ss1967092370	Jul 19, 2016 (147)
71	JJLAB	ss2026063217	Sep 14, 2016 (149)
72	USC_VALOUEV	ss2154309799	Dec 20, 2016 (150)
73	HUMAN_LONGEVITY	ss2173743100	Dec 20, 2016 (150)
74	SYSTEMSBIOZJU	ss2627501904	Nov 08, 2017 (151)
75	ILLUMINA	ss2632694056	Nov 08, 2017 (151)
76	GRF	ss2698542640	Nov 08, 2017 (151)
77	ILLUMINA	ss2710707136	Nov 08, 2017 (151)
78	GNOMAD	ss2887029401	Nov 08, 2017 (151)
79	AFFY	ss2984909019	Nov 08, 2017 (151)
80	AFFY	ss2985554083	Nov 08, 2017 (151)
81	SWEGEN	ss3006165838	Nov 08, 2017 (151)
82	ILLUMINA	ss3021227011	Nov 08, 2017 (151)
83	BIOINF_KMB_FNS_UNIBA	ss3026818299	Nov 08, 2017 (151)
84	CSHL	ss3349030188	Nov 08, 2017 (151)
85	ILLUMINA	ss3625576646	Oct 12, 2018 (152)
86	ILLUMINA	ss3626418140	Oct 12, 2018 (152)
87	ILLUMINA	ss3630720891	Oct 12, 2018 (152)
88	ILLUMINA	ss3632944406	Oct 12, 2018 (152)
89	ILLUMINA	ss3633641299	Oct 12, 2018 (152)
90	ILLUMINA	ss3634397345	Oct 12, 2018 (152)
91	ILLUMINA	ss3635333961	Oct 12, 2018 (152)
92	ILLUMINA	ss3636078260	Oct 12, 2018 (152)
93	ILLUMINA	ss3637084578	Oct 12, 2018 (152)
94	ILLUMINA	ss3637842295	Oct 12, 2018 (152)
95	ILLUMINA	ss3638937065	Oct 12, 2018 (152)
96	ILLUMINA	ss3639468022	Oct 12, 2018 (152)
97	ILLUMINA	ss3640104687	Oct 12, 2018 (152)
98	ILLUMINA	ss3640999110	Oct 12, 2018 (152)
99	ILLUMINA	ss3641293354	Oct 12, 2018 (152)
100	ILLUMINA	ss3642846317	Oct 12, 2018 (152)
101	ILLUMINA	ss3644531973	Oct 12, 2018 (152)
102	URBANLAB	ss3649323694	Oct 12, 2018 (152)
103	ILLUMINA	ss3651577395	Oct 12, 2018 (152)
104	ILLUMINA	ss3653679092	Oct 12, 2018 (152)
105	EGCUT_WGS	ss3673686950	Jul 13, 2019 (153)
106	EVA_DECODE	ss3689558073	Jul 13, 2019 (153)
107	ILLUMINA	ss3725147030	Jul 13, 2019 (153)
108	ACPOP	ss3737185140	Jul 13, 2019 (153)
109	ILLUMINA	ss3744068261	Jul 13, 2019 (153)
110	ILLUMINA	ss3744698253	Jul 13, 2019 (153)
111	EVA	ss3747917218	Jul 13, 2019 (153)
112	PAGE_CC	ss3771550755	Jul 13, 2019 (153)
113	ILLUMINA	ss3772198859	Jul 13, 2019 (153)
114	PACBIO	ss3786623820	Jul 13, 2019 (153)
115	PACBIO	ss3791810879	Jul 13, 2019 (153)
116	PACBIO	ss3796692878	Jul 13, 2019 (153)
117	KHV_HUMAN_GENOMES	ss3813281262	Jul 13, 2019 (153)
118	EVA	ss3832042625	Apr 26, 2020 (154)
119	EVA	ss3839553539	Apr 26, 2020 (154)
120	EVA	ss3845020905	Apr 26, 2020 (154)
121	HGDP	ss3847381101	Apr 26, 2020 (154)
122	SGDP_PRJ	ss3873831964	Apr 26, 2020 (154)
123	KRGDB	ss3921803496	Apr 26, 2020 (154)
124	KOGIC	ss3967465462	Apr 26, 2020 (154)
125	EVA	ss3984632038	Apr 26, 2021 (155)
126	EVA	ss3985467040	Apr 26, 2021 (155)
127	EVA	ss4017478378	Apr 26, 2021 (155)
128	TOPMED	ss4847010043	Apr 26, 2021 (155)
129	TOMMO_GENOMICS	ss5196882765	Apr 26, 2021 (155)
130	1000G_HIGH_COVERAGE	ss5283408755	Oct 16, 2022 (156)
131	GENOGRAPHIC	ss5314538801	Oct 16, 2022 (156)
132	EVA	ss5315463053	Oct 16, 2022 (156)
133	EVA	ss5392459692	Oct 16, 2022 (156)
134	HUGCELL_USP	ss5479131097	Oct 16, 2022 (156)
135	EVA	ss5509953112	Oct 16, 2022 (156)
136	1000G_HIGH_COVERAGE	ss5577025018	Oct 16, 2022 (156)
137	SANFORD_IMAGENETICS	ss5624244112	Oct 16, 2022 (156)
138	SANFORD_IMAGENETICS	ss5648955841	Oct 16, 2022 (156)
139	TOMMO_GENOMICS	ss5741914712	Oct 16, 2022 (156)
140	EVA	ss5799808395	Oct 16, 2022 (156)
141	YY_MCH	ss5811323390	Oct 16, 2022 (156)
142	EVA	ss5824170654	Oct 16, 2022 (156)
143	EVA	ss5847370518	Oct 16, 2022 (156)
144	EVA	ss5849500353	Oct 16, 2022 (156)
145	EVA	ss5878287080	Oct 16, 2022 (156)
146	EVA	ss5940249279	Oct 16, 2022 (156)
147	EVA	ss5979321502	Oct 16, 2022 (156)
148	1000Genomes	NC_000010.10 - 28752106	Oct 12, 2018 (152)
149	1000Genomes_30x	NC_000010.11 - 28463177	Oct 16, 2022 (156)
150	The Avon Longitudinal Study of Parents and Children	NC_000010.10 - 28752106	Oct 12, 2018 (152)
151	Genome-wide autozygosity in Daghestan	NC_000010.9 - 28792112	Apr 26, 2020 (154)
152	Genetic variation in the Estonian population	NC_000010.10 - 28752106	Oct 12, 2018 (152)
153	Genographic Project	NC_000010.11 - 28463177	Oct 16, 2022 (156)
154	The Danish reference pan genome	NC_000010.10 - 28752106	Apr 26, 2020 (154)
155	gnomAD - Genomes	NC_000010.11 - 28463177	Apr 26, 2021 (155)
156	Genome of the Netherlands Release 5	NC_000010.10 - 28752106	Apr 26, 2020 (154)
157	HGDP-CEPH-db Supplement 1	NC_000010.9 - 28792112	Apr 26, 2020 (154)
158	HapMap	NC_000010.11 - 28463177	Apr 26, 2020 (154)
159	KOREAN population from KRGDB	NC_000010.10 - 28752106	Apr 26, 2020 (154)
160	Korean Genome Project	NC_000010.11 - 28463177	Apr 26, 2020 (154)
161	Northern Sweden	NC_000010.10 - 28752106	Jul 13, 2019 (153)
162	The PAGE Study	NC_000010.11 - 28463177	Jul 13, 2019 (153)
163	Ancient Sardinia genome-wide 1240k capture data generation and analysis	NC_000010.10 - 28752106	Apr 26, 2021 (155)
164	CNV burdens in cranial meningiomas	NC_000010.10 - 28752106	Apr 26, 2021 (155)
165	Qatari	NC_000010.10 - 28752106	Apr 26, 2020 (154)
166	SGDP_PRJ	NC_000010.10 - 28752106	Apr 26, 2020 (154)
167	Siberian	NC_000010.10 - 28752106	Apr 26, 2020 (154)
168	8.3KJPN	NC_000010.10 - 28752106	Apr 26, 2021 (155)
169	14KJPN	NC_000010.11 - 28463177	Oct 16, 2022 (156)
170	TopMed	NC_000010.11 - 28463177	Apr 26, 2021 (155)
171	UK 10K study - Twins	NC_000010.10 - 28752106	Oct 12, 2018 (152)
172	A Vietnamese Genetic Variation Database	NC_000010.10 - 28752106	Jul 13, 2019 (153)
173	ALFA	NC_000010.11 - 28463177	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs17474314	Oct 08, 2004 (123)
rs58313946	May 24, 2008 (130)
rs386558917	Aug 21, 2014 (142)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
28980890, ss3921803496	NC_000010.10:28752105:T:A	NC_000010.11:28463176:T:A	(self)
ss85355821, ss3638937065, ss3639468022	NC_000010.8:28792111:T:C	NC_000010.11:28463176:T:C	(self)
49291, 58993, ss88142050, ss115453755, ss119103893, ss160507764, ss169513579, ss170708803, ss201322610, ss254169109, ss280536998, ss286154330, ss291003486, ss480441655, ss825447504, ss1397577744, ss1596997973, ss1713168836, ss3642846317, ss3847381101	NC_000010.9:28792111:T:C	NC_000010.11:28463176:T:C	(self)
49186213, 27330856, 19425198, 2090687, 12185205, 28980890, 10470005, 692967, 181496, 12710568, 25848944, 6826153, 54852072, 27330856, 6069168, ss224644730, ss235113266, ss241833924, ss480455532, ss481245686, ss485018267, ss537045894, ss561862912, ss656475459, ss778482964, ss782955432, ss783917609, ss832211503, ss832874855, ss833938861, ss987335397, ss1076872636, ss1336820016, ss1426265662, ss1575008428, ss1624274312, ss1667268345, ss1751964371, ss1806322818, ss1930668638, ss1946279266, ss1959250650, ss1967092370, ss2026063217, ss2154309799, ss2627501904, ss2632694056, ss2698542640, ss2710707136, ss2887029401, ss2984909019, ss2985554083, ss3006165838, ss3021227011, ss3349030188, ss3625576646, ss3626418140, ss3630720891, ss3632944406, ss3633641299, ss3634397345, ss3635333961, ss3636078260, ss3637084578, ss3637842295, ss3640104687, ss3640999110, ss3641293354, ss3644531973, ss3651577395, ss3653679092, ss3673686950, ss3737185140, ss3744068261, ss3744698253, ss3747917218, ss3772198859, ss3786623820, ss3791810879, ss3796692878, ss3832042625, ss3839553539, ss3873831964, ss3921803496, ss3984632038, ss3985467040, ss4017478378, ss5196882765, ss5315463053, ss5392459692, ss5509953112, ss5624244112, ss5648955841, ss5799808395, ss5824170654, ss5847370518, ss5940249279, ss5979321502	NC_000010.10:28752105:T:C	NC_000010.11:28463176:T:C	(self)
64550953, 24232, 347314537, 370090, 23843463, 772224, 75751816, 62555698, 4964230267, ss2173743100, ss3026818299, ss3649323694, ss3689558073, ss3725147030, ss3771550755, ss3813281262, ss3845020905, ss3967465462, ss4847010043, ss5283408755, ss5314538801, ss5479131097, ss5577025018, ss5741914712, ss5811323390, ss5849500353, ss5878287080	NC_000010.11:28463176:T:C	NC_000010.11:28463176:T:C	(self)
ss15974775, ss17403391, ss20613130	NT_008705.15:10727430:T:C	NC_000010.11:28463176:T:C	(self)
ss3083031, ss5358366, ss24446704, ss38655299, ss66835587, ss67228736, ss67623975, ss69075128, ss70707053, ss71273886, ss75907141, ss79116986, ss83983161, ss102865789, ss121930506, ss131756586, ss153866637, ss154760695, ss159362977, ss161328595, ss171049115, ss173144723	NT_008705.16:28692105:T:C	NC_000010.11:28463176:T:C	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs2153299

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs2153299