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dbSNP Short Genetic Variations

Examples: rs268, BRCA1 and more Advanced search

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs3135900

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr4:1807298 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
A>C / A>G / A>T
Variation Type
SNV Single Nucleotide Variation
Frequency
G=0.018527 (4904/264690, TOPMED)
G=0.026886 (4589/170682, GnomAD_exome)
G=0.023883 (3347/140142, GnomAD) (+ 15 more)
G=0.02801 (827/29526, ALFA)
G=0.04449 (1280/28772, ExAC)
G=0.01989 (255/12820, GO-ESP)
G=0.0092 (59/6404, 1000G_30x)
G=0.0098 (49/5008, 1000G)
G=0.0379 (170/4480, Estonian)
G=0.0345 (133/3854, ALSPAC)
G=0.0251 (93/3708, TWINSUK)
G=0.048 (29/600, NorthernSweden)
G=0.002 (1/534, MGP)
G=0.014 (3/216, Qatari)
G=0.05 (2/40, GENOME_DK)
A=0.50 (8/16, SGDP_PRJ)
G=0.50 (8/16, SGDP_PRJ)
A=0.4 (3/8, Siberian)
Clinical Significance
Reported in ClinVar
Gene : Consequence
FGFR3 : Non Coding Transcript Variant
Publications
0 citations
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541
Population Group Sample Size Ref Allele Alt Allele
Total Global 29526 A=0.97199 G=0.02801
European Sub 21934 A=0.96790 G=0.03210
African Sub 3540 A=0.9927 G=0.0073
African Others Sub 122 A=1.000 G=0.000
African American Sub 3418 A=0.9924 G=0.0076
Asian Sub 168 A=1.000 G=0.000
East Asian Sub 112 A=1.000 G=0.000
Other Asian Sub 56 A=1.00 G=0.00
Latin American 1 Sub 146 A=0.986 G=0.014
Latin American 2 Sub 610 A=0.993 G=0.007
South Asian Sub 98 A=0.97 G=0.03
Other Sub 3030 A=0.9710 G=0.0290


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
TopMed Global Study-wide 264690 A=0.981473 G=0.018527
gnomAD - Exomes Global Study-wide 170682 A=0.973114 G=0.026886
gnomAD - Exomes European Sub 82932 A=0.96058 G=0.03942
gnomAD - Exomes Asian Sub 37350 A=0.98102 G=0.01898
gnomAD - Exomes American Sub 27850 A=0.99321 G=0.00679
gnomAD - Exomes African Sub 9202 A=0.9950 G=0.0050
gnomAD - Exomes Ashkenazi Jewish Sub 8628 A=0.9692 G=0.0308
gnomAD - Exomes Other Sub 4720 A=0.9767 G=0.0233
gnomAD - Genomes Global Study-wide 140142 A=0.976117 G=0.023883
gnomAD - Genomes European Sub 75880 A=0.96234 G=0.03766
gnomAD - Genomes African Sub 42004 A=0.99431 G=0.00569
gnomAD - Genomes American Sub 13658 A=0.99202 G=0.00798
gnomAD - Genomes Ashkenazi Jewish Sub 3320 A=0.9741 G=0.0259
gnomAD - Genomes East Asian Sub 3128 A=1.0000 G=0.0000
gnomAD - Genomes Other Sub 2152 A=0.9744 G=0.0256
Allele Frequency Aggregator Total Global 29526 A=0.97199 G=0.02801
Allele Frequency Aggregator European Sub 21934 A=0.96790 G=0.03210
Allele Frequency Aggregator African Sub 3540 A=0.9927 G=0.0073
Allele Frequency Aggregator Other Sub 3030 A=0.9710 G=0.0290
Allele Frequency Aggregator Latin American 2 Sub 610 A=0.993 G=0.007
Allele Frequency Aggregator Asian Sub 168 A=1.000 G=0.000
Allele Frequency Aggregator Latin American 1 Sub 146 A=0.986 G=0.014
Allele Frequency Aggregator South Asian Sub 98 A=0.97 G=0.03
ExAC Global Study-wide 28772 A=0.95551 G=0.04449
ExAC Europe Sub 14430 A=0.93416 G=0.06584
ExAC Asian Sub 10110 A=0.97399 G=0.02601
ExAC African Sub 2012 A=0.9901 G=0.0099
ExAC American Sub 1970 A=0.9843 G=0.0157
ExAC Other Sub 250 A=0.936 G=0.064
GO Exome Sequencing Project Global Study-wide 12820 A=0.98011 G=0.01989
GO Exome Sequencing Project European American Sub 8496 A=0.9725 G=0.0275
GO Exome Sequencing Project African American Sub 4324 A=0.9951 G=0.0049
1000Genomes_30x Global Study-wide 6404 A=0.9908 G=0.0092
1000Genomes_30x African Sub 1786 A=1.0000 G=0.0000
1000Genomes_30x Europe Sub 1266 A=0.9763 G=0.0237
1000Genomes_30x South Asian Sub 1202 A=0.9792 G=0.0208
1000Genomes_30x East Asian Sub 1170 A=0.9991 G=0.0009
1000Genomes_30x American Sub 980 A=0.997 G=0.003
1000Genomes Global Study-wide 5008 A=0.9902 G=0.0098
1000Genomes African Sub 1322 A=1.0000 G=0.0000
1000Genomes East Asian Sub 1008 A=0.9990 G=0.0010
1000Genomes Europe Sub 1006 A=0.9761 G=0.0239
1000Genomes South Asian Sub 978 A=0.979 G=0.021
1000Genomes American Sub 694 A=0.996 G=0.004
Genetic variation in the Estonian population Estonian Study-wide 4480 A=0.9621 G=0.0379
The Avon Longitudinal Study of Parents and Children PARENT AND CHILD COHORT Study-wide 3854 A=0.9655 G=0.0345
UK 10K study - Twins TWIN COHORT Study-wide 3708 A=0.9749 G=0.0251
Northern Sweden ACPOP Study-wide 600 A=0.952 G=0.048
Medical Genome Project healthy controls from Spanish population Spanish controls Study-wide 534 A=0.998 G=0.002
Qatari Global Study-wide 216 A=0.986 G=0.014
The Danish reference pan genome Danish Study-wide 40 A=0.95 G=0.05
SGDP_PRJ Global Study-wide 16 A=0.50 G=0.50
Siberian Global Study-wide 8 A=0.4 G=0.6
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 4 NC_000004.12:g.1807298A>C
GRCh38.p14 chr 4 NC_000004.12:g.1807298A>G
GRCh38.p14 chr 4 NC_000004.12:g.1807298A>T
GRCh37.p13 chr 4 NC_000004.11:g.1809025A>C
GRCh37.p13 chr 4 NC_000004.11:g.1809025A>G
GRCh37.p13 chr 4 NC_000004.11:g.1809025A>T
FGFR3 RefSeqGene (LRG_1021) NG_012632.1:g.18987A>C
FGFR3 RefSeqGene (LRG_1021) NG_012632.1:g.18987A>G
FGFR3 RefSeqGene (LRG_1021) NG_012632.1:g.18987A>T
Gene: FGFR3, fibroblast growth factor receptor 3 (plus strand)
Molecule type Change Amino acid[Codon] SO Term
FGFR3 transcript variant 4 NM_001354809.2:c.*36= N/A 3 Prime UTR Variant
FGFR3 transcript variant 5 NM_001354810.2:c.*10= N/A 3 Prime UTR Variant
FGFR3 transcript variant 1 NM_000142.5:c.*36= N/A 3 Prime UTR Variant
FGFR3 transcript variant 2 NM_022965.4:c.*36= N/A 3 Prime UTR Variant
FGFR3 transcript variant 3 NM_001163213.2:c.*36= N/A 3 Prime UTR Variant
FGFR3 transcript variant 6 NR_148971.2:n.2883A>C N/A Non Coding Transcript Variant
FGFR3 transcript variant 6 NR_148971.2:n.2883A>G N/A Non Coding Transcript Variant
FGFR3 transcript variant 6 NR_148971.2:n.2883A>T N/A Non Coding Transcript Variant
FGFR3 transcript variant X1 XM_006713868.2:c.*36= N/A 3 Prime UTR Variant
FGFR3 transcript variant X2 XM_047449820.1:c.*36= N/A 3 Prime UTR Variant
FGFR3 transcript variant X3 XM_006713870.2:c.*36= N/A 3 Prime UTR Variant
FGFR3 transcript variant X4 XM_006713869.2:c.*36= N/A 3 Prime UTR Variant
FGFR3 transcript variant X5 XM_047449821.1:c.*36= N/A 3 Prime UTR Variant
FGFR3 transcript variant X6 XM_006713871.2:c.*36= N/A 3 Prime UTR Variant
FGFR3 transcript variant X7 XM_011513420.2:c.*36= N/A 3 Prime UTR Variant
FGFR3 transcript variant X8 XM_011513422.2:c.*36= N/A 3 Prime UTR Variant
FGFR3 transcript variant X9 XM_047449822.1:c.*36= N/A 3 Prime UTR Variant
FGFR3 transcript variant X10 XM_006713873.2:c.*36= N/A 3 Prime UTR Variant
FGFR3 transcript variant X11 XM_047449823.1:c.*36= N/A 3 Prime UTR Variant
FGFR3 transcript variant X12 XM_047449824.1:c.*36= N/A 3 Prime UTR Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Allele: G (allele ID: 1215204 )
ClinVar Accession Disease Names Clinical Significance
RCV001611794.3 not provided Benign
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement A= C G T
GRCh38.p14 chr 4 NC_000004.12:g.1807298= NC_000004.12:g.1807298A>C NC_000004.12:g.1807298A>G NC_000004.12:g.1807298A>T
GRCh37.p13 chr 4 NC_000004.11:g.1809025= NC_000004.11:g.1809025A>C NC_000004.11:g.1809025A>G NC_000004.11:g.1809025A>T
FGFR3 RefSeqGene (LRG_1021) NG_012632.1:g.18987= NG_012632.1:g.18987A>C NG_012632.1:g.18987A>G NG_012632.1:g.18987A>T
FGFR3 transcript variant 1 NM_000142.5:c.*36= NM_000142.5:c.*36A>C NM_000142.5:c.*36A>G NM_000142.5:c.*36A>T
FGFR3 transcript variant 1 NM_000142.4:c.*36= NM_000142.4:c.*36A>C NM_000142.4:c.*36A>G NM_000142.4:c.*36A>T
FGFR3 transcript variant 2 NM_022965.4:c.*36= NM_022965.4:c.*36A>C NM_022965.4:c.*36A>G NM_022965.4:c.*36A>T
FGFR3 transcript variant 2 NM_022965.3:c.*36= NM_022965.3:c.*36A>C NM_022965.3:c.*36A>G NM_022965.3:c.*36A>T
FGFR3 transcript variant 6 NR_148971.2:n.2883= NR_148971.2:n.2883A>C NR_148971.2:n.2883A>G NR_148971.2:n.2883A>T
FGFR3 transcript variant 6 NR_148971.1:n.2864= NR_148971.1:n.2864A>C NR_148971.1:n.2864A>G NR_148971.1:n.2864A>T
FGFR3 transcript variant 3 NM_001163213.2:c.*36= NM_001163213.2:c.*36A>C NM_001163213.2:c.*36A>G NM_001163213.2:c.*36A>T
FGFR3 transcript variant 3 NM_001163213.1:c.*36= NM_001163213.1:c.*36A>C NM_001163213.1:c.*36A>G NM_001163213.1:c.*36A>T
FGFR3 transcript variant 4 NM_001354809.2:c.*36= NM_001354809.2:c.*36A>C NM_001354809.2:c.*36A>G NM_001354809.2:c.*36A>T
FGFR3 transcript variant 4 NM_001354809.1:c.*36= NM_001354809.1:c.*36A>C NM_001354809.1:c.*36A>G NM_001354809.1:c.*36A>T
FGFR3 transcript variant 5 NM_001354810.2:c.*10= NM_001354810.2:c.*10A>C NM_001354810.2:c.*10A>G NM_001354810.2:c.*10A>T
FGFR3 transcript variant 5 NM_001354810.1:c.*10= NM_001354810.1:c.*10A>C NM_001354810.1:c.*10A>G NM_001354810.1:c.*10A>T
FGFR3 transcript variant X1 XM_006713868.2:c.*36= XM_006713868.2:c.*36A>C XM_006713868.2:c.*36A>G XM_006713868.2:c.*36A>T
FGFR3 transcript variant X1 XM_006713868.1:c.*36= XM_006713868.1:c.*36A>C XM_006713868.1:c.*36A>G XM_006713868.1:c.*36A>T
FGFR3 transcript variant X3 XM_006713870.2:c.*36= XM_006713870.2:c.*36A>C XM_006713870.2:c.*36A>G XM_006713870.2:c.*36A>T
FGFR3 transcript variant X3 XM_006713870.1:c.*36= XM_006713870.1:c.*36A>C XM_006713870.1:c.*36A>G XM_006713870.1:c.*36A>T
FGFR3 transcript variant X4 XM_006713869.2:c.*36= XM_006713869.2:c.*36A>C XM_006713869.2:c.*36A>G XM_006713869.2:c.*36A>T
FGFR3 transcript variant X2 XM_006713869.1:c.*36= XM_006713869.1:c.*36A>C XM_006713869.1:c.*36A>G XM_006713869.1:c.*36A>T
FGFR3 transcript variant X7 XM_011513420.2:c.*36= XM_011513420.2:c.*36A>C XM_011513420.2:c.*36A>G XM_011513420.2:c.*36A>T
FGFR3 transcript variant X5 XM_011513420.1:c.*36= XM_011513420.1:c.*36A>C XM_011513420.1:c.*36A>G XM_011513420.1:c.*36A>T
FGFR3 transcript variant X6 XM_006713871.2:c.*36= XM_006713871.2:c.*36A>C XM_006713871.2:c.*36A>G XM_006713871.2:c.*36A>T
FGFR3 transcript variant X4 XM_006713871.1:c.*36= XM_006713871.1:c.*36A>C XM_006713871.1:c.*36A>G XM_006713871.1:c.*36A>T
FGFR3 transcript variant X8 XM_011513422.2:c.*36= XM_011513422.2:c.*36A>C XM_011513422.2:c.*36A>G XM_011513422.2:c.*36A>T
FGFR3 transcript variant X6 XM_011513422.1:c.*36= XM_011513422.1:c.*36A>C XM_011513422.1:c.*36A>G XM_011513422.1:c.*36A>T
FGFR3 transcript variant X10 XM_006713873.2:c.*36= XM_006713873.2:c.*36A>C XM_006713873.2:c.*36A>G XM_006713873.2:c.*36A>T
FGFR3 transcript variant X7 XM_006713873.1:c.*36= XM_006713873.1:c.*36A>C XM_006713873.1:c.*36A>G XM_006713873.1:c.*36A>T
FGFR3 transcript variant X5 XM_047449821.1:c.*36= XM_047449821.1:c.*36A>C XM_047449821.1:c.*36A>G XM_047449821.1:c.*36A>T
FGFR3 transcript variant X2 XM_047449820.1:c.*36= XM_047449820.1:c.*36A>C XM_047449820.1:c.*36A>G XM_047449820.1:c.*36A>T
FGFR3 transcript variant X11 XM_047449823.1:c.*36= XM_047449823.1:c.*36A>C XM_047449823.1:c.*36A>G XM_047449823.1:c.*36A>T
FGFR3 transcript variant X9 XM_047449822.1:c.*36= XM_047449822.1:c.*36A>C XM_047449822.1:c.*36A>G XM_047449822.1:c.*36A>T
FGFR3 transcript variant X12 XM_047449824.1:c.*36= XM_047449824.1:c.*36A>C XM_047449824.1:c.*36A>G XM_047449824.1:c.*36A>T
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

54 SubSNP, 17 Frequency, 1 ClinVar submissions
No Submitter Submission ID Date (Build)
1 COX ss4384088 Mar 26, 2002 (103)
2 SBOYD ss6313851 Feb 20, 2003 (111)
3 EGP_SNPS ss28528471 Dec 02, 2004 (124)
4 BCM-HGSC-SUB ss206645438 Jul 04, 2010 (132)
5 PJP ss293054190 May 09, 2011 (134)
6 1000GENOMES ss331380479 May 09, 2011 (134)
7 1000GENOMES ss490882388 May 04, 2012 (137)
8 NHLBI-ESP ss712578032 Apr 25, 2013 (138)
9 EVA-GONL ss979674582 Aug 21, 2014 (142)
10 1000GENOMES ss1308094648 Aug 21, 2014 (142)
11 EVA_GENOME_DK ss1580381013 Apr 01, 2015 (144)
12 EVA_DECODE ss1589170543 Apr 01, 2015 (144)
13 EVA_UK10K_ALSPAC ss1609239099 Apr 01, 2015 (144)
14 EVA_UK10K_TWINSUK ss1652233132 Apr 01, 2015 (144)
15 EVA_EXAC ss1687390010 Apr 01, 2015 (144)
16 EVA_MGP ss1711049105 Apr 01, 2015 (144)
17 WEILL_CORNELL_DGM ss1922906304 Feb 12, 2016 (147)
18 GENOMED ss1966658486 Feb 12, 2016 (147)
19 JJLAB ss2022026600 Sep 14, 2016 (149)
20 USC_VALOUEV ss2150133149 Dec 20, 2016 (150)
21 HUMAN_LONGEVITY ss2259839139 Dec 20, 2016 (150)
22 GNOMAD ss2734347279 Nov 08, 2017 (151)
23 GNOMAD ss2747187270 Nov 08, 2017 (151)
24 GNOMAD ss2804705315 Nov 08, 2017 (151)
25 AFFY ss2985283117 Nov 08, 2017 (151)
26 SWEGEN ss2993995327 Nov 08, 2017 (151)
27 ILLUMINA ss3022337183 Nov 08, 2017 (151)
28 CSHL ss3345499473 Nov 08, 2017 (151)
29 OMUKHERJEE_ADBS ss3646300232 Oct 12, 2018 (152)
30 ILLUMINA ss3652819658 Oct 12, 2018 (152)
31 ILLUMINA ss3654053504 Oct 12, 2018 (152)
32 EGCUT_WGS ss3661933384 Jul 13, 2019 (153)
33 EVA_DECODE ss3711240623 Jul 13, 2019 (153)
34 ACPOP ss3730779577 Jul 13, 2019 (153)
35 EVA ss3761287318 Jul 13, 2019 (153)
36 EVA ss3823994188 Apr 25, 2020 (154)
37 EVA ss3825651641 Apr 25, 2020 (154)
38 EVA ss3828326995 Apr 25, 2020 (154)
39 SGDP_PRJ ss3858028141 Apr 25, 2020 (154)
40 EVA ss3986270291 Apr 26, 2021 (155)
41 TOPMED ss4600228581 Apr 26, 2021 (155)
42 CPQ_GEN_INCA ss5236854785 Apr 26, 2021 (155)
43 CPQ_GEN_INCA ss5236859940 Apr 26, 2021 (155)
44 EVA ss5237003980 Apr 26, 2021 (155)
45 1000G_HIGH_COVERAGE ss5257749400 Oct 13, 2022 (156)
46 EVA ss5346382691 Oct 13, 2022 (156)
47 HUGCELL_USP ss5456701810 Oct 13, 2022 (156)
48 1000G_HIGH_COVERAGE ss5538050004 Oct 13, 2022 (156)
49 SANFORD_IMAGENETICS ss5634176771 Oct 13, 2022 (156)
50 EVA ss5843431308 Oct 13, 2022 (156)
51 EVA ss5848602440 Oct 13, 2022 (156)
52 EVA ss5861823467 Oct 13, 2022 (156)
53 EVA ss5935696718 Oct 13, 2022 (156)
54 EVA ss5962551738 Oct 13, 2022 (156)
55 1000Genomes NC_000004.11 - 1809025 Oct 12, 2018 (152)
56 1000Genomes_30x NC_000004.12 - 1807298 Oct 13, 2022 (156)
57 The Avon Longitudinal Study of Parents and Children NC_000004.11 - 1809025 Oct 12, 2018 (152)
58 Genetic variation in the Estonian population NC_000004.11 - 1809025 Oct 12, 2018 (152)
59 ExAC NC_000004.11 - 1809025 Oct 12, 2018 (152)
60 The Danish reference pan genome NC_000004.11 - 1809025 Apr 25, 2020 (154)
61 gnomAD - Genomes NC_000004.12 - 1807298 Apr 26, 2021 (155)
62 gnomAD - Exomes NC_000004.11 - 1809025 Jul 13, 2019 (153)
63 GO Exome Sequencing Project NC_000004.11 - 1809025 Oct 12, 2018 (152)
64 Medical Genome Project healthy controls from Spanish population NC_000004.11 - 1809025 Apr 25, 2020 (154)
65 Northern Sweden NC_000004.11 - 1809025 Jul 13, 2019 (153)
66 Qatari NC_000004.11 - 1809025 Apr 25, 2020 (154)
67 SGDP_PRJ NC_000004.11 - 1809025 Apr 25, 2020 (154)
68 Siberian NC_000004.11 - 1809025 Apr 25, 2020 (154)
69 TopMed NC_000004.12 - 1807298 Apr 26, 2021 (155)
70 UK 10K study - Twins NC_000004.11 - 1809025 Oct 12, 2018 (152)
71 ALFA NC_000004.12 - 1807298 Apr 26, 2021 (155)
72 ClinVar RCV001611794.3 Oct 13, 2022 (156)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
ss5935696718 NC_000004.11:1809024:A:C NC_000004.12:1807297:A:C
ss206645438, ss293054190, ss1589170543 NC_000004.10:1778822:A:G NC_000004.12:1807297:A:G (self)
19432769, 10831370, 7671632, 7346170, 6545952, 3447081, 452441, 164865, 4064442, 4948234, 10045121, 2649503, 10831370, ss331380479, ss490882388, ss712578032, ss979674582, ss1308094648, ss1580381013, ss1609239099, ss1652233132, ss1687390010, ss1711049105, ss1922906304, ss1966658486, ss2022026600, ss2150133149, ss2734347279, ss2747187270, ss2804705315, ss2985283117, ss2993995327, ss3022337183, ss3345499473, ss3646300232, ss3652819658, ss3654053504, ss3661933384, ss3730779577, ss3761287318, ss3823994188, ss3825651641, ss3828326995, ss3858028141, ss3986270291, ss5236854785, ss5236859940, ss5346382691, ss5634176771, ss5843431308, ss5848602440, ss5935696718, ss5962551738 NC_000004.11:1809024:A:G NC_000004.12:1807297:A:G (self)
RCV001611794.3, 25575939, 137958845, 437606137, 9055358306, ss2259839139, ss3711240623, ss4600228581, ss5237003980, ss5257749400, ss5456701810, ss5538050004, ss5861823467 NC_000004.12:1807297:A:G NC_000004.12:1807297:A:G (self)
ss4384088, ss6313851, ss28528471 NT_006051.18:330378:A:G NC_000004.12:1807297:A:G (self)
ss5935696718 NC_000004.11:1809024:A:T NC_000004.12:1807297:A:T
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs3135900

Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top▲ Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post761+d5e8e07